Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:16:27 (925010): wrapper (7.7.26015): starting
18:16:27 (925010): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 18:16:27] Arguments: --nthreads 8
[2025-07-22 18:16:27] Threads: 8
[2025-07-22 18:16:27] Checking for CVMFS
[2025-07-22 18:16:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 18:16:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 18:16:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 18:16:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 18:16:27] 2.13.1.0 116762 1781 185300 148637 2 57 32683709 40960000 13755 16776704 0 22881232 99.999 65900 40429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 18:16:27] CVMFS is ok
[2025-07-22 18:16:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 18:16:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 18:16:27] Further information can be found at the LHC@home message board.
[2025-07-22 18:16:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 18:16:27] Checking for apptainer binary...
[2025-07-22 18:16:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 18:16:27] Running /usr/bin/apptainer --version
[2025-07-22 18:16:27] apptainer version 1.4.1-1.el9
[2025-07-22 18:16:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 18:16:27] c-208-39.aglt2.org
[2025-07-22 18:16:27] apptainer works
[2025-07-22 18:16:28] Set ATHENA_PROC_NUMBER=8
[2025-07-22 18:16:28] Set ATHENA_CORE_NUMBER=8
[2025-07-22 18:16:28] Starting ATLAS job with PandaID=6741853342
[2025-07-22 18:16:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 19:36:07]  *** The last 200 lines of the pilot log: ***
[2025-07-22 19:36:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 19:36:07]  replicas=None
[2025-07-22 19:36:07]  scope=mc23_13p6TeV
[2025-07-22 19:36:07]  status=None
[2025-07-22 19:36:07]  status_code=0
[2025-07-22 19:36:07]  storage_token=
[2025-07-22 19:36:07]  surl=/tmp/boinchome/slots/15/PanDA_Pilot-6741853342/log.45697490._001531.job.log.tgz.1
[2025-07-22 19:36:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/6f/log.45697490._001531.job.log.tgz.1
[2025-07-22 19:36:07]  workdir=None
[2025-07-22 19:36:07] ]
[2025-07-22 19:36:07] 2025-07-22 23:35:28,358 | INFO     | transferring file log.45697490._001531.job.log.tgz.1 from /tmp/boinchome/slots/15/PanDA_Pilot-6741853342/log.45697490._001531.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-22 19:36:07] 2025-07-22 23:35:28,358 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/15/PanDA_Pilot-6741853342/log.45697490._001531.job.log.tgz.1 /tmp/boinchome/slots/15/log.45697490._001531.j
[2025-07-22 19:36:07] 2025-07-22 23:35:28,379 | INFO     | adding to output.list: log.45697490._001531.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/6f/log.45697490._001531.job.log.tg
[2025-07-22 19:36:07] 2025-07-22 23:35:28,380 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 19:36:07] 2025-07-22 23:35:28,380 | INFO     | summary of transferred files:
[2025-07-22 19:36:07] 2025-07-22 23:35:28,380 | INFO     |  -- lfn=log.45697490._001531.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 19:36:07] 2025-07-22 23:35:28,380 | INFO     | stage-out finished correctly
[2025-07-22 19:36:07] 2025-07-22 23:35:28,583 | INFO     | PID=929703 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 19:36:07] 2025-07-22 23:35:28,583 | INFO     | .. there are 16 such processes running
[2025-07-22 19:36:07] 2025-07-22 23:35:28,710 | INFO     | monitor loop #342: job 0:6741853342 is in state 'finished'
[2025-07-22 19:36:07] 2025-07-22 23:35:28,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 19:36:07] 2025-07-22 23:35:28,835 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 19:36:07] 2025-07-22 23:35:31,169 | INFO     | job 6741853342 has state=finished
[2025-07-22 19:36:07] 2025-07-22 23:35:31,170 | INFO     | preparing for final server update for job 6741853342 in state='finished'
[2025-07-22 19:36:07] 2025-07-22 23:35:31,213 | INFO     | monitor loop #343: job 0:6741853342 is in state 'finished'
[2025-07-22 19:36:07] 2025-07-22 23:35:31,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 19:36:07] 2025-07-22 23:35:31,228 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-22 19:36:07] 2025-07-22 23:35:31,228 | INFO     | this job has now completed (state=finished)
[2025-07-22 19:36:07] 2025-07-22 23:35:31,229 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 19:36:07] 2025-07-22 23:35:31,229 | INFO     | log transfer has been attempted: DONE
[2025-07-22 19:36:07] 2025-07-22 23:35:31,229 | INFO     | job 6741853342 has finished - writing final server update
[2025-07-22 19:36:07] 2025-07-22 23:35:31,229 | INFO     | total number of processed events: 400 (read)
[2025-07-22 19:36:07] 2025-07-22 23:35:31,230 | INFO     | executing command: lscpu
[2025-07-22 19:36:07] 2025-07-22 23:35:31,284 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 19:36:07] 2025-07-22 23:35:33,716 | INFO     | monitor loop #344: job 0:6741853342 is in state 'finished'
[2025-07-22 19:36:07] 2025-07-22 23:35:33,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,857 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 19:36:07] 2025-07-22 23:35:34,862 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.6923046874995
[2025-07-22 19:36:07] 2025-07-22 23:35:34,875 | INFO     | using path: /tmp/boinchome/slots/15/PanDA_Pilot-6741853342/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,875 | INFO     | extracted standard info from prmon json
[2025-07-22 19:36:07] 2025-07-22 23:35:34,875 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 19:36:07] 2025-07-22 23:35:34,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 19:36:07] 2025-07-22 23:35:34,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 19:36:07] 2025-07-22 23:35:34,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | fitting pss+swap vs Time
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | sum of square deviations: 110960220.0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | sum of deviations: -2589116146.9999995
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | mean x: 1753225061.0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | mean y: 2616643.6619718308
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | -- intersect: 40911902104.34472
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | intersect: 40911902104.34472
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | chi2: 0.0056075344983909665
[2025-07-22 19:36:07] 2025-07-22 23:35:34,877 | INFO     | -- intersect: 40911902104.34472
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | current memory leak: -23.33 B/s (using 71 data points, chi2=0.01)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | could have reported an average CPU frequency of 3791 MHz (6 samples)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | ..............................
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . Timing measurements:
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . get job = 0 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . initial setup = 2 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . payload setup = 5 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . stage-in = 0 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . payload execution = 4707 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . stage-out = 0 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | . log creation = 0 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,878 | INFO     | ..............................
[2025-07-22 19:36:07] 2025-07-22 23:35:34,934 | INFO     | 
[2025-07-22 19:36:07] 2025-07-22 23:35:34,934 | INFO     | job summary report
[2025-07-22 19:36:07] 2025-07-22 23:35:34,934 | INFO     | --------------------------------------------------
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | PanDA job id: 6741853342
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | task id: 45697490
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | errors: (none)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | pilot state: finished 
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | transexitcode: 0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | exeerrorcode: 0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | exeerrordiag: 
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | exitcode: 0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | exitmsg: OK
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | cpuconsumptiontime: 35506 s
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | nevents: 400
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | neventsw: 0
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | pid: 936127
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | pgrp: 936127
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | corecount: 8
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | event service: False
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | sizes: {0: 2397332, 1: 2397531, 4: 2397793, 11: 2397821, 4717: 2424157, 4718: 2433341, 4724: 2433479}
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | --------------------------------------------------
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | 
[2025-07-22 19:36:07] 2025-07-22 23:35:34,935 | INFO     | executing command: ls -lF /tmp/boinchome/slots/15
[2025-07-22 19:36:07] 2025-07-22 23:35:34,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,952 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | job 6741853342 has completed (purged errors)
[2025-07-22 19:36:07] 2025-07-22 23:35:34,953 | INFO     | overall cleanup function is called
[2025-07-22 19:36:07] 2025-07-22 23:35:35,961 | INFO     | --- collectZombieJob: --- 10, [936127]
[2025-07-22 19:36:07] 2025-07-22 23:35:35,961 | INFO     | zombie collector waiting for pid 936127
[2025-07-22 19:36:07] 2025-07-22 23:35:35,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 19:36:07] 2025-07-22 23:35:35,961 | INFO     | collected zombie processes
[2025-07-22 19:36:07] 2025-07-22 23:35:35,961 | INFO     | will attempt to kill all subprocesses of pid=936127
[2025-07-22 19:36:07] 2025-07-22 23:35:36,325 | INFO     | process IDs to be killed: [936127] (in reverse order)
[2025-07-22 19:36:07] 2025-07-22 23:35:36,443 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 19:36:07] 2025-07-22 23:35:36,444 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 19:36:07] 2025-07-22 23:35:36,459 | INFO     | did not find any defunct processes belonging to 936127
[2025-07-22 19:36:07] 2025-07-22 23:35:36,473 | INFO     | did not find any defunct processes belonging to 936127
[2025-07-22 19:36:07] 2025-07-22 23:35:36,473 | INFO     | ready for new job
[2025-07-22 19:36:07] 2025-07-22 23:35:36,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 19:36:07] 2025-07-22 23:35:36,475 | INFO     | ***************************************
[2025-07-22 19:36:07] 2025-07-22 23:35:36,475 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 19:36:07] 2025-07-22 23:35:36,475 | INFO     | ***************************************
[2025-07-22 19:36:07] 2025-07-22 23:35:36,475 | INFO     | 
[2025-07-22 19:36:07] 2025-07-22 23:35:36,479 | INFO     | architecture information:
[2025-07-22 19:36:07] 2025-07-22 23:35:36,480 | INFO     | executing command: cat /etc/os-release
[2025-07-22 19:36:07] 2025-07-22 23:35:36,493 | INFO     | cat /etc/os-release:
[2025-07-22 19:36:07] NAME="CentOS Linux"
[2025-07-22 19:36:07] VERSION="7 (Core)"
[2025-07-22 19:36:07] ID="centos"
[2025-07-22 19:36:07] ID_LIKE="rhel fedora"
[2025-07-22 19:36:07] VERSION_ID="7"
[2025-07-22 19:36:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 19:36:07] ANSI_COLOR="0;31"
[2025-07-22 19:36:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 19:36:07] HOME_URL="https://www.centos.org/"
[2025-07-22 19:36:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 19:36:07] 
[2025-07-22 19:36:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 19:36:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 19:36:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 19:36:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 19:36:07] 
[2025-07-22 19:36:07] 2025-07-22 23:35:36,493 | INFO     | ***************************************
[2025-07-22 19:36:07] 2025-07-22 23:35:36,995 | INFO     | executing command: df -mP /tmp/boinchome/slots/15
[2025-07-22 19:36:07] 2025-07-22 23:35:37,010 | INFO     | sufficient remaining disk space (159523012608 B)
[2025-07-22 19:36:07] 2025-07-22 23:35:37,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 19:36:07] 2025-07-22 23:35:37,010 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 19:36:07] 2025-07-22 23:35:37,010 | INFO     | update_server=False
[2025-07-22 19:36:07] 2025-07-22 23:35:37,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 19:36:07] 2025-07-22 23:35:37,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 19:36:07] 2025-07-22 23:35:37,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 19:36:07] 2025-07-22 23:35:37,224 | INFO     | aborting loop
[2025-07-22 19:36:07] 2025-07-22 23:35:37,510 | INFO     | all data control threads have been joined
[2025-07-22 19:36:07] 2025-07-22 23:35:37,703 | INFO     | all payload control threads have been joined
[2025-07-22 19:36:07] 2025-07-22 23:35:37,752 | INFO     | all job control threads have been joined
[2025-07-22 19:36:07] 2025-07-22 23:35:38,015 | INFO     | [job] retrieve thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,115 | INFO     | [payload] validate_post thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,229 | INFO     | [job] job monitor thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,371 | INFO     | [data] copytool_in thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,516 | INFO     | [data] control thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,697 | INFO     | [job] validate thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,709 | INFO     | [payload] control thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,757 | INFO     | [job] control thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,870 | INFO     | [payload] failed_post thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,946 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:38,969 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:39,016 | INFO     | [data] copytool_out thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:39,156 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:39,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 19:36:07] 2025-07-22 23:35:39,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 19:36:07] 2025-07-22 23:35:40,947 | INFO     | [job] queue monitor thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:43,407 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:47,515 | INFO     | job.realtimelogging is not enabled
[2025-07-22 19:36:07] 2025-07-22 23:35:48,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 19:36:07] 2025-07-22 23:35:50,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140587666212672)>', '<ExcThread(monitor, started 140586963171072)>']
[2025-07-22 19:36:07] 2025-07-22 23:35:55,637 | INFO     | all workflow threads have been joined
[2025-07-22 19:36:07] 2025-07-22 23:35:55,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 19:36:07] 2025-07-22 23:35:55,638 | INFO     | traces error code: 0
[2025-07-22 19:36:07] 2025-07-22 23:35:55,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | INFO     | PID=929703 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | INFO     | .. there are 16 such processes running
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 19:36:07] 2025-07-22 23:36:07,102 | INFO     | [monitor] control thread has ended
[2025-07-22 19:36:07] 2025-07-22 23:36:07,203 [wrapper] ==== pilot stdout END ====
[2025-07-22 19:36:07] 2025-07-22 23:36:07,205 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 19:36:07] 2025-07-22 23:36:07,207 [wrapper] pilotpid: 929703
[2025-07-22 19:36:07] 2025-07-22 23:36:07,209 [wrapper] Pilot exit status: 0
[2025-07-22 19:36:07] 2025-07-22 23:36:07,217 [wrapper] pandaids: 6741853342
[2025-07-22 19:36:07] 2025-07-22 23:36:07,300 [wrapper] cleanup supervisor_pilot 1329519 929704
[2025-07-22 19:36:07] 2025-07-22 23:36:07,303 [wrapper] Test setup, not cleaning
[2025-07-22 19:36:07] 2025-07-22 23:36:07,307 [wrapper] apfmon messages muted
[2025-07-22 19:36:07] 2025-07-22 23:36:07,310 [wrapper] ==== wrapper stdout END ====
[2025-07-22 19:36:07] 2025-07-22 23:36:07,312 [wrapper] ==== wrapper stderr END ====
[2025-07-22 19:36:07]  *** Error codes and diagnostics ***
[2025-07-22 19:36:07]     "exeErrorCode": 0,
[2025-07-22 19:36:07]     "exeErrorDiag": "",
[2025-07-22 19:36:07]     "pilotErrorCode": 0,
[2025-07-22 19:36:07]     "pilotErrorDiag": "",
[2025-07-22 19:36:07]  *** Listing of results directory ***
[2025-07-22 19:36:07] total 640656
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 10:25 pilot3.tar.gz
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 11:05 queuedata.json
[2025-07-22 19:36:07] -rwx------. 1 boincer umatlas     36292 Jul 22 11:09 runpilot2-wrapper.sh
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas       100 Jul 22 18:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 19:36:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 18:16 run_atlas
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas       105 Jul 22 18:16 job.xml
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas 347211936 Jul 22 18:16 EVNT.45697488._000081.pool.root.1
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 18:16 start_atlas.sh
[2025-07-22 19:36:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 18:16 shared
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas    542895 Jul 22 18:16 input.tar.gz
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas         0 Jul 22 18:16 boinc_lockfile
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas      2589 Jul 22 18:16 pandaJob.out
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas    977736 Jul 22 18:16 agis_schedconf.cvmfs.json
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas   1593031 Jul 22 18:16 agis_ddmendpoints.agis.ALL.json
[2025-07-22 19:36:07] drwx------. 4 boincer umatlas      4096 Jul 22 18:16 pilot3
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas      7173 Jul 22 19:28 init_data.xml
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas 303428889 Jul 22 19:34 HITS.45697490._001531.pool.root.1
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas       530 Jul 22 19:34 boinc_task_state.xml
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas        95 Jul 22 19:35 pilot_heartbeat.json
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas      1030 Jul 22 19:35 memory_monitor_summary.json
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas    298819 Jul 22 19:35 log.45697490._001531.job.log.tgz.1
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas      7768 Jul 22 19:35 heartbeat.json
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 19:36 boinc_mmap_file
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas        27 Jul 22 19:36 wrapper_checkpoint.txt
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas       822 Jul 22 19:36 pilotlog.txt
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas    463642 Jul 22 19:36 log.45697490._001531.job.log.1
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas       357 Jul 22 19:36 output.list
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas       620 Jul 22 19:36 runtime_log
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas    778240 Jul 22 19:36 result.tar.gz
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas      8674 Jul 22 19:36 runtime_log.err
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas       652 Jul 22 19:36 7uPLDmCnTy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZfJLDmiBcEAo.diag
[2025-07-22 19:36:07] -rw-r--r--. 1 boincer umatlas     21957 Jul 22 19:36 stderr.txt
[2025-07-22 19:36:07] HITS file was successfully produced:
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas 303428889 Jul 22 19:34 shared/HITS.pool.root.1
[2025-07-22 19:36:07]  *** Contents of shared directory: ***
[2025-07-22 19:36:07] total 636708
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas 347211936 Jul 22 18:16 ATLAS.root_0
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 18:16 start_atlas.sh
[2025-07-22 19:36:07] -rw-r--r--. 2 boincer umatlas    542895 Jul 22 18:16 input.tar.gz
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas 303428889 Jul 22 19:34 HITS.pool.root.1
[2025-07-22 19:36:07] -rw-------. 1 boincer umatlas    778240 Jul 22 19:36 result.tar.gz
19:36:09 (925010): run_atlas exited; CPU time 35632.036223
19:36:09 (925010): called boinc_finish(0)

</stderr_txt>
]]>

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