Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:36:15 (346424): wrapper (7.7.26015): starting
12:36:15 (346424): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 12:36:15] Arguments: --nthreads 12
[2025-07-22 12:36:15] Threads: 12
[2025-07-22 12:36:15] Checking for CVMFS
[2025-07-22 12:36:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 12:36:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 12:36:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 12:36:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 12:36:16] 2.11.5.0 3356172 21454 214276 148631 1 729 25656107 45568000 24347 130560 0 139739195 99.678 138358646 23349 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-22 12:36:16] CVMFS is ok
[2025-07-22 12:36:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 12:36:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 12:36:16] Further information can be found at the LHC@home message board.
[2025-07-22 12:36:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 12:36:16] Checking for apptainer binary...
[2025-07-22 12:36:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 12:36:16] Running /usr/bin/apptainer --version
[2025-07-22 12:36:17] apptainer version 1.4.1-1.el9
[2025-07-22 12:36:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 12:36:17] wns0060.triumf.lcg
[2025-07-22 12:36:17] apptainer works
[2025-07-22 12:36:17] Set ATHENA_PROC_NUMBER=12
[2025-07-22 12:36:17] Set ATHENA_CORE_NUMBER=12
[2025-07-22 12:36:17] Starting ATLAS job with PandaID=6742500209
[2025-07-22 12:36:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 12:41:13]  *** The last 200 lines of the pilot log: ***
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | WARNING  | wrong length of table data, x=[1753213074.0], y=[1816.0] (must be same and length>=4)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . Timing measurements:
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . get job = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . initial setup = 4 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload setup = 17 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . stage-in = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload execution = 47 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . stage-out = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . log creation = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 12:41:13] 2025-07-22 19:40:38,425 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742500209/pilotlog.txt
[2025-07-22 12:41:13] 2025-07-22 19:40:38,448 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 12:41:13] - Log from pilotlog.txt -
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742500209/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | extracted standard info from prmon json
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | WARNING  | wrong length of table data, x=[1753213074.0], y=[1816.0] (must be same and length>=4)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . Timing measurements:
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . get job = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . initial setup = 4 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload setup = 17 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . stage-in = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload execution = 47 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . stage-out = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . log creation = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 12:41:13] 2025-07-22 19:40:38,425 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742500209/pilotlog.txt
[2025-07-22 12:41:13] 2025-07-22 19:40:38,448 | WARNING  | 
[2025-07-22 12:41:13] [begin log extracts]
[2025-07-22 12:41:13] - Log from pilotlog.txt -
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742500209/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | extracted standard info from prmon json
[2025-07-22 12:41:13] 2025-07-22 19:40:38,416 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 12:41:13] 2025-07-22 19:40:38,417 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | WARNING  | wrong length of table data, x=[1753213074.0], y=[1816.0] (must be same and length>=4)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,418 | INFO     | could have reported an average CPU frequency of 2646 MHz (4 samples)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . Timing measurements:
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . get job = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . initial setup = 4 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload setup = 17 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . stage-in = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,423 | INFO     | . payload execution = 47 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . stage-out = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | . log creation = 0 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | ..............................
[2025-07-22 12:41:13] 2025-07-22 19:40:38,424 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 12:41:13] 2025-07-22 19:40:38,425 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742500209/pilotlog.txt
[2025-07-22 12:41:13] [end log extracts]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,448 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,449 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | 
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | job summary report
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | --------------------------------------------------
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | PanDA job id: 6742500209
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | task id: 45697541
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 12:38:18,179 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | pilot state: failed 
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | transexitcode: 65
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | exeerrorcode: 65
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | exitcode: 65
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,967 | INFO     | cpuconsumptiontime: 18 s
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | nevents: 0
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | neventsw: 0
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | pid: 367161
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | pgrp: 367161
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | corecount: 12
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | event service: False
[2025-07-22 12:41:13] 2025-07-22 19:40:38,968 | INFO     | sizes: {0: 2397503, 11: 2397503, 12: 2397793, 22: 2397821, 68: 2421059, 69: 2425351, 70: 2425507, 200: 2425673}
[2025-07-22 12:41:13] 2025-07-22 19:40:38,969 | INFO     | --------------------------------------------------
[2025-07-22 12:41:13] 2025-07-22 19:40:38,969 | INFO     | 
[2025-07-22 12:41:13] 2025-07-22 19:40:38,969 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 12:41:13] 2025-07-22 19:40:38,984 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,984 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,984 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,984 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 12:41:13] 2025-07-22 19:40:38,985 | INFO     | job 6742500209 has completed (purged errors)
[2025-07-22 12:41:13] 2025-07-22 19:40:38,986 | INFO     | overall cleanup function is called
[2025-07-22 12:41:13] 2025-07-22 19:40:39,992 | INFO     | --- collectZombieJob: --- 10, [367161]
[2025-07-22 12:41:13] 2025-07-22 19:40:39,992 | INFO     | zombie collector waiting for pid 367161
[2025-07-22 12:41:13] 2025-07-22 19:40:39,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 12:41:13] 2025-07-22 19:40:39,992 | INFO     | collected zombie processes
[2025-07-22 12:41:13] 2025-07-22 19:40:39,992 | INFO     | will attempt to kill all subprocesses of pid=367161
[2025-07-22 12:41:13] 2025-07-22 19:40:40,372 | INFO     | process IDs to be killed: [367161] (in reverse order)
[2025-07-22 12:41:13] 2025-07-22 19:40:40,513 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 12:41:13] 2025-07-22 19:40:40,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 12:41:13] 2025-07-22 19:40:40,566 | INFO     | did not find any defunct processes belonging to 367161
[2025-07-22 12:41:13] 2025-07-22 19:40:40,598 | INFO     | did not find any defunct processes belonging to 367161
[2025-07-22 12:41:13] 2025-07-22 19:40:40,598 | INFO     | ready for new job
[2025-07-22 12:41:13] 2025-07-22 19:40:40,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 12:41:13] 2025-07-22 19:40:40,599 | INFO     | ***************************************
[2025-07-22 12:41:13] 2025-07-22 19:40:40,599 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 12:41:13] 2025-07-22 19:40:40,600 | INFO     | ***************************************
[2025-07-22 12:41:13] 2025-07-22 19:40:40,600 | INFO     | 
[2025-07-22 12:41:13] 2025-07-22 19:40:40,602 | INFO     | architecture information:
[2025-07-22 12:41:13] 2025-07-22 19:40:40,602 | INFO     | executing command: cat /etc/os-release
[2025-07-22 12:41:13] 2025-07-22 19:40:40,639 | INFO     | cat /etc/os-release:
[2025-07-22 12:41:13] NAME="CentOS Linux"
[2025-07-22 12:41:13] VERSION="7 (Core)"
[2025-07-22 12:41:13] ID="centos"
[2025-07-22 12:41:13] ID_LIKE="rhel fedora"
[2025-07-22 12:41:13] VERSION_ID="7"
[2025-07-22 12:41:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 12:41:13] ANSI_COLOR="0;31"
[2025-07-22 12:41:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 12:41:13] HOME_URL="https://www.centos.org/"
[2025-07-22 12:41:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 12:41:13] 
[2025-07-22 12:41:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 12:41:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 12:41:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 12:41:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 12:41:13] 
[2025-07-22 12:41:13] 2025-07-22 19:40:40,640 | INFO     | ***************************************
[2025-07-22 12:41:13] 2025-07-22 19:40:41,143 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 12:41:13] 2025-07-22 19:40:41,214 | INFO     | sufficient remaining disk space (1710715043840 B)
[2025-07-22 12:41:13] 2025-07-22 19:40:41,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 12:41:13] 2025-07-22 19:40:41,215 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 12:41:13] 2025-07-22 19:40:41,215 | INFO     | update_server=False
[2025-07-22 12:41:13] 2025-07-22 19:40:41,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 12:41:13] 2025-07-22 19:40:41,221 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 12:41:13] 2025-07-22 19:40:41,221 | INFO     | aborting loop
[2025-07-22 12:41:13] 2025-07-22 19:40:41,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 12:41:13] 2025-07-22 19:40:41,352 | INFO     | all data control threads have been joined
[2025-07-22 12:41:13] 2025-07-22 19:40:41,520 | INFO     | all payload control threads have been joined
[2025-07-22 12:41:13] 2025-07-22 19:40:41,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 12:41:13] 2025-07-22 19:40:42,212 | INFO     | all job control threads have been joined
[2025-07-22 12:41:13] 2025-07-22 19:40:42,221 | INFO     | [job] retrieve thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:42,227 | INFO     | [job] job monitor thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:42,246 | INFO     | [payload] validate_post thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:42,358 | INFO     | [data] control thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:42,526 | INFO     | [payload] control thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:42,791 | INFO     | [job] validate thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,069 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,076 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,099 | INFO     | [payload] failed_post thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,218 | INFO     | [job] control thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,277 | INFO     | [data] copytool_out thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,392 | INFO     | [data] copytool_in thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,394 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,612 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:43,614 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 12:41:13] 2025-07-22 19:40:44,620 | INFO     | [job] queue monitor thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:45,824 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 12:41:13] 2025-07-22 19:40:46,355 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449903720256)>', '<ExcThread(monitor, started 140449507432192)>']
[2025-07-22 12:41:13] 2025-07-22 19:40:51,381 | INFO     | all workflow threads have been joined
[2025-07-22 12:41:13] 2025-07-22 19:40:51,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 12:41:13] 2025-07-22 19:40:51,381 | INFO     | traces error code: 0
[2025-07-22 12:41:13] 2025-07-22 19:40:51,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 12:41:13] 2025-07-22 19:41:12,583 | INFO     | PID=351204 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 12:41:13] 2025-07-22 19:41:12,583 | INFO     | .. there are 49 such processes running
[2025-07-22 12:41:13] 2025-07-22 19:41:12,583 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 12:41:13] 2025-07-22 19:41:12,584 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 12:41:13] 2025-07-22 19:41:12,584 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 12:41:13] 2025-07-22 19:41:12,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 12:41:13] 2025-07-22 19:41:12,584 | INFO     | [monitor] control thread has ended
[2025-07-22 12:41:13] 2025-07-22 19:41:12,760 [wrapper] ==== pilot stdout END ====
[2025-07-22 12:41:13] 2025-07-22 19:41:12,778 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 12:41:13] 2025-07-22 19:41:12,801 [wrapper] pilotpid: 351204
[2025-07-22 12:41:13] 2025-07-22 19:41:12,828 [wrapper] Pilot exit status: 0
[2025-07-22 12:41:13] 2025-07-22 19:41:12,931 [wrapper] pandaids: 6742500209
[2025-07-22 12:41:13] 2025-07-22 19:41:13,234 [wrapper] cleanup supervisor_pilot  351210 351205
[2025-07-22 12:41:13] 2025-07-22 19:41:13,270 [wrapper] Test setup, not cleaning
[2025-07-22 12:41:13] 2025-07-22 19:41:13,293 [wrapper] apfmon messages muted
[2025-07-22 12:41:13] 2025-07-22 19:41:13,310 [wrapper] ==== wrapper stdout END ====
[2025-07-22 12:41:13] 2025-07-22 19:41:13,341 [wrapper] ==== wrapper stderr END ====
[2025-07-22 12:41:13]  *** Error codes and diagnostics ***
[2025-07-22 12:41:13]     "exeErrorCode": 65,
[2025-07-22 12:41:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 12:41:13]     "pilotErrorCode": 1305,
[2025-07-22 12:41:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 12:41:13]  *** Listing of results directory ***
[2025-07-22 12:41:13] total 341304
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc    530466 Jul 22 08:14 pilot3.tar.gz
[2025-07-22 12:41:13] -rwx------. 1 boinc boinc     36292 Jul 22 09:10 runpilot2-wrapper.sh
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc      5112 Jul 22 09:10 queuedata.json
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc       100 Jul 22 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 12:41:13] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 12:36 run_atlas
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc       105 Jul 22 12:36 job.xml
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc      6597 Jul 22 12:36 init_data.xml
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc 345419028 Jul 22 12:36 EVNT.45697539._000194.pool.root.1
[2025-07-22 12:41:13] drwxrwx--x. 2 boinc boinc      4096 Jul 22 12:36 shared
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc    542892 Jul 22 12:36 input.tar.gz
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc     15095 Jul 22 12:36 start_atlas.sh
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc         0 Jul 22 12:36 boinc_lockfile
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc      2593 Jul 22 12:36 pandaJob.out
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc    977712 Jul 22 12:36 agis_schedconf.cvmfs.json
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc   1593031 Jul 22 12:36 agis_ddmendpoints.agis.ALL.json
[2025-07-22 12:41:13] drwx------. 4 boinc boinc      4096 Jul 22 12:36 pilot3
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc       945 Jul 22 12:38 memory_monitor_summary.json
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc     21550 Jul 22 12:38 log.45697541._001351.job.log.tgz.1
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc      8380 Jul 22 12:40 heartbeat.json
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc       524 Jul 22 12:40 boinc_task_state.xml
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc        95 Jul 22 12:41 pilot_heartbeat.json
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc       822 Jul 22 12:41 pilotlog.txt
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc        22 Jul 22 12:41 wrapper_checkpoint.txt
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc     79926 Jul 22 12:41 log.45697541._001351.job.log.1
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc      8192 Jul 22 12:41 boinc_mmap_file
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc       188 Jul 22 12:41 output.list
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc       620 Jul 22 12:41 runtime_log
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc    122880 Jul 22 12:41 result.tar.gz
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc      8485 Jul 22 12:41 runtime_log.err
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc       645 Jul 22 12:41 qN8NDmqkUy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIkJLDmDnOcbm.diag
[2025-07-22 12:41:13] -rw-r--r--. 1 boinc boinc     21796 Jul 22 12:41 stderr.txt
[2025-07-22 12:41:13] No HITS result produced
[2025-07-22 12:41:13]  *** Contents of shared directory: ***
[2025-07-22 12:41:13] total 337996
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc 345419028 Jul 22 12:36 ATLAS.root_0
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc    542892 Jul 22 12:36 input.tar.gz
[2025-07-22 12:41:13] -rw-r--r--. 2 boinc boinc     15095 Jul 22 12:36 start_atlas.sh
[2025-07-22 12:41:13] -rw-------. 1 boinc boinc    122880 Jul 22 12:41 result.tar.gz
12:41:15 (346424): run_atlas exited; CPU time 26.472948
12:41:15 (346424): called boinc_finish(0)

</stderr_txt>
]]>

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