Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:23:27 (3552637): wrapper (7.7.26015): starting
15:23:27 (3552637): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 15:23:27] Arguments: --nthreads 8
[2025-07-22 15:23:27] Threads: 8
[2025-07-22 15:23:27] Checking for CVMFS
[2025-07-22 15:23:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 15:23:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 15:23:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 15:23:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 15:23:27] 2.13.1.0 4026694 1389 69736 148631 3 188 39558311 40960000 11260 16776704 0 20210694 99.999 48555 51056 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 15:23:27] CVMFS is ok
[2025-07-22 15:23:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 15:23:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 15:23:27] Further information can be found at the LHC@home message board.
[2025-07-22 15:23:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 15:23:27] Checking for apptainer binary...
[2025-07-22 15:23:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 15:23:27] Running /usr/bin/apptainer --version
[2025-07-22 15:23:27] apptainer version 1.4.1-1.el9
[2025-07-22 15:23:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 15:23:28] c-208-38.aglt2.org
[2025-07-22 15:23:28] apptainer works
[2025-07-22 15:23:28] Set ATHENA_PROC_NUMBER=8
[2025-07-22 15:23:28] Set ATHENA_CORE_NUMBER=8
[2025-07-22 15:23:28] Starting ATLAS job with PandaID=6741760473
[2025-07-22 15:23:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 16:35:12]  *** The last 200 lines of the pilot log: ***
[2025-07-22 16:35:12]  protocol_id=None
[2025-07-22 16:35:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 16:35:12]  replicas=None
[2025-07-22 16:35:12]  scope=mc23_13p6TeV
[2025-07-22 16:35:12]  status=None
[2025-07-22 16:35:12]  status_code=0
[2025-07-22 16:35:12]  storage_token=
[2025-07-22 16:35:12]  surl=/tmp/boinchome/slots/12/PanDA_Pilot-6741760473/log.45697472._001392.job.log.tgz.1
[2025-07-22 16:35:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/ee/log.45697472._001392.job.log.tgz.1
[2025-07-22 16:35:12]  workdir=None
[2025-07-22 16:35:12] ]
[2025-07-22 16:35:12] 2025-07-22 20:34:32,744 | INFO     | transferring file log.45697472._001392.job.log.tgz.1 from /tmp/boinchome/slots/12/PanDA_Pilot-6741760473/log.45697472._001392.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-22 16:35:12] 2025-07-22 20:34:32,744 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/12/PanDA_Pilot-6741760473/log.45697472._001392.job.log.tgz.1 /tmp/boinchome/slots/12/log.45697472._001392.j
[2025-07-22 16:35:12] 2025-07-22 20:34:32,761 | INFO     | adding to output.list: log.45697472._001392.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/ee/log.45697472._001392.job.log.tg
[2025-07-22 16:35:12] 2025-07-22 20:34:32,762 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 16:35:12] 2025-07-22 20:34:32,762 | INFO     | summary of transferred files:
[2025-07-22 16:35:12] 2025-07-22 20:34:32,762 | INFO     |  -- lfn=log.45697472._001392.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 16:35:12] 2025-07-22 20:34:32,762 | INFO     | stage-out finished correctly
[2025-07-22 16:35:12] 2025-07-22 20:34:33,347 | INFO     | PID=3563455 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-22 16:35:12] 2025-07-22 20:34:33,347 | INFO     | .. there are 16 such processes running
[2025-07-22 16:35:12] 2025-07-22 20:34:33,646 | INFO     | monitor loop #314: job 0:6741760473 is in state 'finished'
[2025-07-22 16:35:12] 2025-07-22 20:34:33,646 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 16:35:12] 2025-07-22 20:34:34,274 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 16:35:12] 2025-07-22 20:34:36,148 | INFO     | monitor loop #315: job 0:6741760473 is in state 'finished'
[2025-07-22 16:35:12] 2025-07-22 20:34:36,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 16:35:12] 2025-07-22 20:34:36,708 | INFO     | job 6741760473 has state=finished
[2025-07-22 16:35:12] 2025-07-22 20:34:36,708 | INFO     | preparing for final server update for job 6741760473 in state='finished'
[2025-07-22 16:35:12] 2025-07-22 20:34:36,708 | INFO     | this job has now completed (state=finished)
[2025-07-22 16:35:12] 2025-07-22 20:34:36,708 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 16:35:12] 2025-07-22 20:34:36,708 | INFO     | log transfer has been attempted: DONE
[2025-07-22 16:35:12] 2025-07-22 20:34:36,709 | INFO     | job 6741760473 has finished - writing final server update
[2025-07-22 16:35:12] 2025-07-22 20:34:36,709 | INFO     | total number of processed events: 400 (read)
[2025-07-22 16:35:12] 2025-07-22 20:34:36,709 | INFO     | executing command: lscpu
[2025-07-22 16:35:12] 2025-07-22 20:34:36,764 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 16:35:12] 2025-07-22 20:34:38,652 | INFO     | monitor loop #316: job 0:6741760473 is in state 'finished'
[2025-07-22 16:35:12] 2025-07-22 20:34:38,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,200 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 16:35:12] 2025-07-22 20:34:40,205 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3692.1699062500006
[2025-07-22 16:35:12] 2025-07-22 20:34:40,218 | INFO     | using path: /tmp/boinchome/slots/12/PanDA_Pilot-6741760473/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,219 | INFO     | extracted standard info from prmon json
[2025-07-22 16:35:12] 2025-07-22 20:34:40,219 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 16:35:12] 2025-07-22 20:34:40,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 16:35:12] 2025-07-22 20:34:40,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 16:35:12] 2025-07-22 20:34:40,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 16:35:12] 2025-07-22 20:34:40,220 | INFO     | fitting pss+swap vs Time
[2025-07-22 16:35:12] 2025-07-22 20:34:40,220 | INFO     | sum of square deviations: 77515872.0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,220 | INFO     | sum of deviations: -878440931.0000001
[2025-07-22 16:35:12] 2025-07-22 20:34:40,220 | INFO     | mean x: 1753214436.0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | mean y: 2594972.777777778
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | -- intersect: 19870723675.535328
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | intersect: 19870723675.535328
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | chi2: 0.0016467217984462803
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | -- intersect: 19870723675.535328
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | current memory leak: -11.33 B/s (using 63 data points, chi2=0.00)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | could have reported an average CPU frequency of 3723 MHz (6 samples)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | ..............................
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . Timing measurements:
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . get job = 0 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . initial setup = 2 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . payload setup = 5 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . stage-in = 0 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . payload execution = 4232 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . stage-out = 0 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | . log creation = 0 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,221 | INFO     | ..............................
[2025-07-22 16:35:12] 2025-07-22 20:34:40,279 | INFO     | 
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | job summary report
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | --------------------------------------------------
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | PanDA job id: 6741760473
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | task id: 45697472
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | errors: (none)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | pilot state: finished 
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | transexitcode: 0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | exeerrorcode: 0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | exeerrordiag: 
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | exitcode: 0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | exitmsg: OK
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | cpuconsumptiontime: 32243 s
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | nevents: 400
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | neventsw: 0
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | pid: 3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | pgrp: 3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | corecount: 8
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | event service: False
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | sizes: {0: 2397533, 3: 2397795, 11: 2397823, 4241: 2423844, 4242: 2432844, 4243: 2432900, 4249: 2433222}
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | --------------------------------------------------
[2025-07-22 16:35:12] 2025-07-22 20:34:40,280 | INFO     | 
[2025-07-22 16:35:12] 2025-07-22 20:34:40,281 | INFO     | executing command: ls -lF /tmp/boinchome/slots/12
[2025-07-22 16:35:12] 2025-07-22 20:34:40,298 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 16:35:12] 2025-07-22 20:34:40,299 | INFO     | job 6741760473 has completed (purged errors)
[2025-07-22 16:35:12] 2025-07-22 20:34:40,300 | INFO     | overall cleanup function is called
[2025-07-22 16:35:12] 2025-07-22 20:34:41,306 | INFO     | --- collectZombieJob: --- 10, [3570300]
[2025-07-22 16:35:12] 2025-07-22 20:34:41,307 | INFO     | zombie collector waiting for pid 3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:41,307 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 16:35:12] 2025-07-22 20:34:41,307 | INFO     | collected zombie processes
[2025-07-22 16:35:12] 2025-07-22 20:34:41,307 | INFO     | will attempt to kill all subprocesses of pid=3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:41,524 | INFO     | process IDs to be killed: [3570300] (in reverse order)
[2025-07-22 16:35:12] 2025-07-22 20:34:41,634 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 16:35:12] 2025-07-22 20:34:41,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 16:35:12] 2025-07-22 20:34:41,649 | INFO     | did not find any defunct processes belonging to 3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:41,660 | INFO     | did not find any defunct processes belonging to 3570300
[2025-07-22 16:35:12] 2025-07-22 20:34:41,660 | INFO     | ready for new job
[2025-07-22 16:35:12] 2025-07-22 20:34:41,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 16:35:12] 2025-07-22 20:34:41,661 | INFO     | ***************************************
[2025-07-22 16:35:12] 2025-07-22 20:34:41,661 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 16:35:12] 2025-07-22 20:34:41,661 | INFO     | ***************************************
[2025-07-22 16:35:12] 2025-07-22 20:34:41,661 | INFO     | 
[2025-07-22 16:35:12] 2025-07-22 20:34:41,666 | INFO     | architecture information:
[2025-07-22 16:35:12] 2025-07-22 20:34:41,666 | INFO     | executing command: cat /etc/os-release
[2025-07-22 16:35:12] 2025-07-22 20:34:41,681 | INFO     | cat /etc/os-release:
[2025-07-22 16:35:12] NAME="CentOS Linux"
[2025-07-22 16:35:12] VERSION="7 (Core)"
[2025-07-22 16:35:12] ID="centos"
[2025-07-22 16:35:12] ID_LIKE="rhel fedora"
[2025-07-22 16:35:12] VERSION_ID="7"
[2025-07-22 16:35:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 16:35:12] ANSI_COLOR="0;31"
[2025-07-22 16:35:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 16:35:12] HOME_URL="https://www.centos.org/"
[2025-07-22 16:35:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 16:35:12] 
[2025-07-22 16:35:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 16:35:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 16:35:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 16:35:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 16:35:12] 
[2025-07-22 16:35:12] 2025-07-22 20:34:41,681 | INFO     | ***************************************
[2025-07-22 16:35:12] 2025-07-22 20:34:42,184 | INFO     | executing command: df -mP /tmp/boinchome/slots/12
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | INFO     | sufficient remaining disk space (159787253760 B)
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | INFO     | update_server=False
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 16:35:12] 2025-07-22 20:34:42,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 16:35:12] 2025-07-22 20:34:42,198 | INFO     | aborting loop
[2025-07-22 16:35:12] 2025-07-22 20:34:42,860 | INFO     | all job control threads have been joined
[2025-07-22 16:35:12] 2025-07-22 20:34:42,969 | INFO     | all data control threads have been joined
[2025-07-22 16:35:12] 2025-07-22 20:34:43,193 | INFO     | all payload control threads have been joined
[2025-07-22 16:35:12] 2025-07-22 20:34:43,200 | INFO     | [job] retrieve thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,203 | INFO     | [job] queue monitor thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,203 | INFO     | [job] job monitor thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,282 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,318 | INFO     | [job] validate thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 16:35:12] 2025-07-22 20:34:43,595 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,669 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,866 | INFO     | [job] control thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:43,974 | INFO     | [data] control thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:44,026 | INFO     | [data] copytool_in thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:44,035 | INFO     | [payload] validate_post thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:44,198 | INFO     | [payload] control thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:44,602 | INFO     | [payload] failed_post thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:44,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 16:35:12] 2025-07-22 20:34:45,341 | INFO     | [data] copytool_out thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:48,848 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:52,830 | INFO     | job.realtimelogging is not enabled
[2025-07-22 16:35:12] 2025-07-22 20:34:53,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 16:35:12] 2025-07-22 20:34:55,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564457023296)>', '<ExcThread(monitor, started 140563743504128)>']
[2025-07-22 16:35:12] 2025-07-22 20:35:00,817 | INFO     | all workflow threads have been joined
[2025-07-22 16:35:12] 2025-07-22 20:35:00,817 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 16:35:12] 2025-07-22 20:35:00,818 | INFO     | traces error code: 0
[2025-07-22 16:35:12] 2025-07-22 20:35:00,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 16:35:12] 2025-07-22 20:35:11,840 | INFO     | PID=3563455 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 16:35:12] 2025-07-22 20:35:11,840 | INFO     | .. there are 16 such processes running
[2025-07-22 16:35:12] 2025-07-22 20:35:11,841 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 16:35:12] 2025-07-22 20:35:11,841 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 16:35:12] 2025-07-22 20:35:11,841 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 16:35:12] 2025-07-22 20:35:11,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 16:35:12] 2025-07-22 20:35:11,841 | INFO     | [monitor] control thread has ended
[2025-07-22 16:35:12] 2025-07-22 20:35:11,921 [wrapper] ==== pilot stdout END ====
[2025-07-22 16:35:12] 2025-07-22 20:35:11,923 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 16:35:12] 2025-07-22 20:35:11,926 [wrapper] pilotpid: 3563455
[2025-07-22 16:35:12] 2025-07-22 20:35:11,928 [wrapper] Pilot exit status: 0
[2025-07-22 16:35:12] 2025-07-22 20:35:11,937 [wrapper] pandaids: 6741760473
[2025-07-22 16:35:12] 2025-07-22 20:35:12,016 [wrapper] cleanup supervisor_pilot 3827897 3563456
[2025-07-22 16:35:12] 2025-07-22 20:35:12,019 [wrapper] Test setup, not cleaning
[2025-07-22 16:35:12] 2025-07-22 20:35:12,022 [wrapper] apfmon messages muted
[2025-07-22 16:35:12] 2025-07-22 20:35:12,024 [wrapper] ==== wrapper stdout END ====
[2025-07-22 16:35:12] 2025-07-22 20:35:12,027 [wrapper] ==== wrapper stderr END ====
[2025-07-22 16:35:12]  *** Error codes and diagnostics ***
[2025-07-22 16:35:12]     "exeErrorCode": 0,
[2025-07-22 16:35:12]     "exeErrorDiag": "",
[2025-07-22 16:35:12]     "pilotErrorCode": 0,
[2025-07-22 16:35:12]     "pilotErrorDiag": "",
[2025-07-22 16:35:12]  *** Listing of results directory ***
[2025-07-22 16:35:12] total 605196
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 04:26 pilot3.tar.gz
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 04:35 queuedata.json
[2025-07-22 16:35:12] -rwx------. 1 boincer umatlas     36292 Jul 22 04:37 runpilot2-wrapper.sh
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas       100 Jul 22 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 16:35:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 15:23 run_atlas
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas       105 Jul 22 15:23 job.xml
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas 329979600 Jul 22 15:23 EVNT.45697470._000056.pool.root.1
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 15:23 start_atlas.sh
[2025-07-22 16:35:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 15:23 shared
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas    542896 Jul 22 15:23 input.tar.gz
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas         0 Jul 22 15:23 boinc_lockfile
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas      2611 Jul 22 15:23 pandaJob.out
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas    977712 Jul 22 15:23 agis_schedconf.cvmfs.json
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas   1593031 Jul 22 15:23 agis_ddmendpoints.agis.ALL.json
[2025-07-22 16:35:12] drwx------. 4 boincer umatlas      4096 Jul 22 15:23 pilot3
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas      7173 Jul 22 16:31 init_data.xml
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas 284391892 Jul 22 16:34 HITS.45697472._001392.pool.root.1
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas       529 Jul 22 16:34 boinc_task_state.xml
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas      1030 Jul 22 16:34 memory_monitor_summary.json
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas    308026 Jul 22 16:34 log.45697472._001392.job.log.tgz.1
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas      7763 Jul 22 16:34 heartbeat.json
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas        27 Jul 22 16:35 wrapper_checkpoint.txt
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 16:35 boinc_mmap_file
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas       823 Jul 22 16:35 pilotlog.txt
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas        95 Jul 22 16:35 pilot_heartbeat.json
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas    425995 Jul 22 16:35 log.45697472._001392.job.log.1
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas       357 Jul 22 16:35 output.list
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas       620 Jul 22 16:35 runtime_log
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas    757760 Jul 22 16:35 result.tar.gz
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas      8674 Jul 22 16:35 runtime_log.err
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas       652 Jul 22 16:35 HWiLDmLgNy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0uILDmbOERWo.diag
[2025-07-22 16:35:12] -rw-r--r--. 1 boincer umatlas     21892 Jul 22 16:35 stderr.txt
[2025-07-22 16:35:12] HITS file was successfully produced:
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas 284391892 Jul 22 16:34 shared/HITS.pool.root.1
[2025-07-22 16:35:12]  *** Contents of shared directory: ***
[2025-07-22 16:35:12] total 601272
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas 329979600 Jul 22 15:23 ATLAS.root_0
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 15:23 start_atlas.sh
[2025-07-22 16:35:12] -rw-r--r--. 2 boincer umatlas    542896 Jul 22 15:23 input.tar.gz
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas 284391892 Jul 22 16:34 HITS.pool.root.1
[2025-07-22 16:35:12] -rw-------. 1 boincer umatlas    757760 Jul 22 16:35 result.tar.gz
16:35:54 (3552637): run_atlas exited; CPU time 32352.291700
16:35:54 (3552637): called boinc_finish(0)

</stderr_txt>
]]>

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