Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
20:11:13 (207622): wrapper (7.7.26015): starting
20:11:13 (207622): wrapper: running run_atlas (--nthreads 4)
[2025-07-22 20:11:13] Arguments: --nthreads 4
[2025-07-22 20:11:13] Threads: 4
[2025-07-22 20:11:13] Checking for CVMFS
[2025-07-22 20:11:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 20:11:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 20:11:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 20:11:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 20:11:14] 2.13.1.0 79548 378 50828 148630 2 57 2326709 6144001 0 130560 0 126845 99.967 14699 928 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-22 20:11:14] CVMFS is ok
[2025-07-22 20:11:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 20:11:14] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-22 20:11:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-22 20:11:14] Further information can be found at the LHC@home message board.
[2025-07-22 20:11:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 20:11:14] Checking for apptainer binary...
[2025-07-22 20:11:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 20:11:14] Running /usr/bin/apptainer --version
[2025-07-22 20:11:14] apptainer version 1.4.1
[2025-07-22 20:11:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 20:11:14] archlinux
[2025-07-22 20:11:14] apptainer works
[2025-07-22 20:11:14] Set ATHENA_PROC_NUMBER=4
[2025-07-22 20:11:14] Set ATHENA_CORE_NUMBER=4
[2025-07-22 20:11:14] Starting ATLAS job with PandaID=6741782421
[2025-07-22 20:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 02:36:05]  *** The last 200 lines of the pilot log: ***
[2025-07-23 02:36:05] 2025-07-23 01:35:30,659 | INFO     | executing command: lscpu
[2025-07-23 02:36:05] 2025-07-23 01:35:30,672 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 02:36:05] 2025-07-23 01:35:31,395 | INFO     | monitor loop #1714: job 0:6741782421 is in state 'finished'
[2025-07-23 02:36:05] 2025-07-23 01:35:31,396 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,520 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-23 02:36:05] 2025-07-23 01:35:33,521 | INFO     | found 2 cores (2 cores per socket, 1 socket) HT, CPU MHz: 2352.0069999999996
[2025-07-23 02:36:05] 2025-07-23 01:35:33,522 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6741782421/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,523 | INFO     | extracted standard info from prmon json
[2025-07-23 02:36:05] 2025-07-23 01:35:33,523 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 02:36:05] 2025-07-23 01:35:33,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 02:36:05] 2025-07-23 01:35:33,523 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 02:36:05] 2025-07-23 01:35:33,523 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 02:36:05] 2025-07-23 01:35:33,527 | INFO     | fitting pss+swap vs Time
[2025-07-23 02:36:05] 2025-07-23 01:35:33,527 | INFO     | sum of square deviations: 16747530754.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | sum of deviations: 51578419063.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | mean x: 1753223020.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | mean y: 2432386.5476190476
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | -- intersect: -5397078322.744642
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | intersect: -5397078322.744642
[2025-07-23 02:36:05] 2025-07-23 01:35:33,530 | INFO     | chi2: 2.6186374292804313
[2025-07-23 02:36:05] 2025-07-23 01:35:33,531 | INFO     | sum of square deviations: 16091695202.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | sum of deviations: 73345963972.00002
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | mean x: 1753222868.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | mean y: 2437391.7855227883
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | -- intersect: -7988754319.031381
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | intersect: -7988754319.031381
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | chi2: 1.9677663829594065
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | current chi2=1.9677663829594065 (change=24.855332740732877 %)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,533 | INFO     | right removable region: 372
[2025-07-23 02:36:05] 2025-07-23 01:35:33,534 | INFO     | sum of square deviations: 16091695202.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,536 | INFO     | sum of deviations: -27588847956.000004
[2025-07-23 02:36:05] 2025-07-23 01:35:33,536 | INFO     | mean x: 1753223173.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,536 | INFO     | mean y: 2450751.5951742628
[2025-07-23 02:36:05] 2025-07-23 01:35:33,536 | INFO     | -- intersect: 3008312281.1387596
[2025-07-23 02:36:05] 2025-07-23 01:35:33,536 | INFO     | intersect: 3008312281.1387596
[2025-07-23 02:36:05] 2025-07-23 01:35:33,537 | INFO     | chi2: 0.7478562912970363
[2025-07-23 02:36:05] 2025-07-23 01:35:33,537 | INFO     | current chi2=0.7478562912970363 (change=71.44101421087005 %)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,537 | INFO     | sum of square deviations: 15453208812.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,539 | INFO     | sum of deviations: -31117324422.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,539 | INFO     | mean x: 1753223325.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,539 | INFO     | mean y: 2451587.241847826
[2025-07-23 02:36:05] 2025-07-23 01:35:33,539 | INFO     | -- intersect: 3532826389.549141
[2025-07-23 02:36:05] 2025-07-23 01:35:33,539 | INFO     | intersect: 3532826389.549141
[2025-07-23 02:36:05] 2025-07-23 01:35:33,540 | INFO     | chi2: 0.7372609907550735
[2025-07-23 02:36:05] 2025-07-23 01:35:33,540 | INFO     | current chi2=0.7372609907550735 (change=1.4167562224537884 %)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,540 | INFO     | left removable region: 20
[2025-07-23 02:36:05] 2025-07-23 01:35:33,540 | INFO     | sum of square deviations: 13523929848.0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,542 | INFO     | sum of deviations: -800608835.0000037
[2025-07-23 02:36:05] 2025-07-23 01:35:33,542 | INFO     | mean x: 1753223447.5
[2025-07-23 02:36:05] 2025-07-23 01:35:33,542 | INFO     | mean y: 2454910.784090909
[2025-07-23 02:36:05] 2025-07-23 01:35:33,542 | INFO     | -- intersect: 106244726.13907404
[2025-07-23 02:36:05] 2025-07-23 01:35:33,542 | INFO     | intersect: 106244726.13907404
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | chi2: 0.06633942932215683
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | -- intersect: 106244726.13907404
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | current memory leak: -0.06 B/s (using 352 data points, chi2=0.07)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | could have reported an average CPU frequency of 2310 MHz (16 samples)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | ..............................
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | . Timing measurements:
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | . get job = 0 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | . initial setup = 13 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | . payload setup = 6 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,543 | INFO     | . stage-in = 1 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,544 | INFO     | . payload execution = 23004 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,544 | INFO     | . stage-out = 1 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,544 | INFO     | . log creation = 0 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,544 | INFO     | ..............................
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | 
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | job summary report
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | --------------------------------------------------
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | PanDA job id: 6741782421
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | task id: 45697490
[2025-07-23 02:36:05] 2025-07-23 01:35:33,602 | INFO     | errors: (none)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | pilot state: finished 
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | transexitcode: 0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | exeerrorcode: 0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | exeerrordiag: 
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | exitcode: 0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | exitmsg: OK
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | cpuconsumptiontime: 87111 s
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | nevents: 400
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | neventsw: 0
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | pid: 217789
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | pgrp: 217789
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | corecount: 4
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | event service: False
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | sizes: {0: 2397498, 4: 2397760, 11: 2397788, 23015: 2432533, 23017: 2441531, 23020: 2441587, 23026: 2441909}
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | --------------------------------------------------
[2025-07-23 02:36:05] 2025-07-23 01:35:33,603 | INFO     | 
[2025-07-23 02:36:05] 2025-07-23 01:35:33,604 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-23 02:36:05] 2025-07-23 01:35:33,614 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | job 6741782421 has completed (purged errors)
[2025-07-23 02:36:05] 2025-07-23 01:35:33,616 | INFO     | overall cleanup function is called
[2025-07-23 02:36:05] 2025-07-23 01:35:34,623 | INFO     | --- collectZombieJob: --- 10, [217789]
[2025-07-23 02:36:05] 2025-07-23 01:35:34,623 | INFO     | zombie collector waiting for pid 217789
[2025-07-23 02:36:05] 2025-07-23 01:35:34,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 02:36:05] 2025-07-23 01:35:34,624 | INFO     | collected zombie processes
[2025-07-23 02:36:05] 2025-07-23 01:35:34,624 | INFO     | will attempt to kill all subprocesses of pid=217789
[2025-07-23 02:36:05] 2025-07-23 01:35:34,679 | INFO     | process IDs to be killed: [217789] (in reverse order)
[2025-07-23 02:36:05] 2025-07-23 01:35:34,703 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 02:36:05] 2025-07-23 01:35:34,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 02:36:05] 2025-07-23 01:35:34,706 | INFO     | did not find any defunct processes belonging to 217789
[2025-07-23 02:36:05] 2025-07-23 01:35:34,707 | INFO     | did not find any defunct processes belonging to 217789
[2025-07-23 02:36:05] 2025-07-23 01:35:34,707 | INFO     | ready for new job
[2025-07-23 02:36:05] 2025-07-23 01:35:34,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 02:36:05] 2025-07-23 01:35:34,709 | INFO     | ***************************************
[2025-07-23 02:36:05] 2025-07-23 01:35:34,709 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 02:36:05] 2025-07-23 01:35:34,709 | INFO     | ***************************************
[2025-07-23 02:36:05] 2025-07-23 01:35:34,709 | INFO     | 
[2025-07-23 02:36:05] 2025-07-23 01:35:34,709 | INFO     | architecture information:
[2025-07-23 02:36:05] 2025-07-23 01:35:34,710 | INFO     | executing command: cat /etc/os-release
[2025-07-23 02:36:05] 2025-07-23 01:35:34,718 | INFO     | cat /etc/os-release:
[2025-07-23 02:36:05] NAME="CentOS Linux"
[2025-07-23 02:36:05] VERSION="7 (Core)"
[2025-07-23 02:36:05] ID="centos"
[2025-07-23 02:36:05] ID_LIKE="rhel fedora"
[2025-07-23 02:36:05] VERSION_ID="7"
[2025-07-23 02:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 02:36:05] ANSI_COLOR="0;31"
[2025-07-23 02:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 02:36:05] HOME_URL="https://www.centos.org/"
[2025-07-23 02:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 02:36:05] 
[2025-07-23 02:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 02:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 02:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 02:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 02:36:05] 
[2025-07-23 02:36:05] 2025-07-23 01:35:34,719 | INFO     | ***************************************
[2025-07-23 02:36:05] 2025-07-23 01:35:35,222 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-23 02:36:05] 2025-07-23 01:35:35,233 | INFO     | sufficient remaining disk space (22806528000 B)
[2025-07-23 02:36:05] 2025-07-23 01:35:35,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 02:36:05] 2025-07-23 01:35:35,233 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 02:36:05] 2025-07-23 01:35:35,233 | INFO     | update_server=False
[2025-07-23 02:36:05] 2025-07-23 01:35:35,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 02:36:05] 2025-07-23 01:35:35,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 02:36:05] 2025-07-23 01:35:35,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 02:36:05] 2025-07-23 01:35:35,234 | INFO     | aborting loop
[2025-07-23 02:36:05] 2025-07-23 01:35:35,328 | INFO     | all data control threads have been joined
[2025-07-23 02:36:05] 2025-07-23 01:35:35,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 02:36:05] 2025-07-23 01:35:35,564 | INFO     | all job control threads have been joined
[2025-07-23 02:36:05] 2025-07-23 01:35:36,239 | INFO     | [job] retrieve thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,240 | INFO     | [job] queue monitor thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,240 | INFO     | [job] job monitor thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,281 | INFO     | all payload control threads have been joined
[2025-07-23 02:36:05] 2025-07-23 01:35:36,333 | INFO     | [data] control thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,519 | INFO     | [payload] validate_post thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,569 | INFO     | [job] control thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,834 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,837 | INFO     | [job] validate thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,839 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:36,886 | INFO     | [data] copytool_in thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:37,165 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:37,287 | INFO     | [payload] control thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:37,357 | INFO     | [payload] failed_post thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:37,549 | INFO     | [data] copytool_out thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:38,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 02:36:05] 2025-07-23 01:35:42,517 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:45,347 | INFO     | job.realtimelogging is not enabled
[2025-07-23 02:36:05] 2025-07-23 01:35:46,352 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 02:36:05] 2025-07-23 01:35:47,204 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514980955968)>', '<ExcThread(monitor, started 140514699478784)>']
[2025-07-23 02:36:05] 2025-07-23 01:35:52,212 | INFO     | all workflow threads have been joined
[2025-07-23 02:36:05] 2025-07-23 01:35:52,212 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 02:36:05] 2025-07-23 01:35:52,213 | INFO     | traces error code: 0
[2025-07-23 02:36:05] 2025-07-23 01:35:52,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | INFO     | PID=211274 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 02:36:05] 2025-07-23 01:36:05,316 | INFO     | [monitor] control thread has ended
[2025-07-23 02:36:05] 2025-07-23 01:36:05,395 [wrapper] ==== pilot stdout END ====
[2025-07-23 02:36:05] 2025-07-23 01:36:05,397 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 02:36:05] 2025-07-23 01:36:05,399 [wrapper] pilotpid: 211274
[2025-07-23 02:36:05] 2025-07-23 01:36:05,401 [wrapper] Pilot exit status: 0
[2025-07-23 02:36:05] 2025-07-23 01:36:05,408 [wrapper] pandaids: 6741782421
[2025-07-23 02:36:05] 2025-07-23 01:36:05,425 [wrapper] cleanup supervisor_pilot  325792 211275
[2025-07-23 02:36:05] 2025-07-23 01:36:05,429 [wrapper] Test setup, not cleaning
[2025-07-23 02:36:05] 2025-07-23 01:36:05,431 [wrapper] apfmon messages muted
[2025-07-23 02:36:05] 2025-07-23 01:36:05,433 [wrapper] ==== wrapper stdout END ====
[2025-07-23 02:36:05] 2025-07-23 01:36:05,435 [wrapper] ==== wrapper stderr END ====
[2025-07-23 02:36:05]  *** Error codes and diagnostics ***
[2025-07-23 02:36:05]     "exeErrorCode": 0,
[2025-07-23 02:36:05]     "exeErrorDiag": "",
[2025-07-23 02:36:05]     "pilotErrorCode": 0,
[2025-07-23 02:36:05]     "pilotErrorDiag": "",
[2025-07-23 02:36:05]  *** Listing of results directory ***
[2025-07-23 02:36:05] total 646184
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc    530466 Jul 22 12:14 pilot3.tar.gz
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc      5112 Jul 22 13:05 queuedata.json
[2025-07-23 02:36:05] -rwx------ 1 boinc boinc     36292 Jul 22 13:07 runpilot2-wrapper.sh
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc       100 Jul 22 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 02:36:05] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 20:11 run_atlas
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc       105 Jul 22 20:11 job.xml
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc 345352856 Jul 22 20:11 EVNT.45697488._000021.pool.root.1
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc      6493 Jul 22 20:11 init_data.xml
[2025-07-23 02:36:05] drwxrwx--x 2 boinc boinc      4096 Jul 22 20:11 shared
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc    542904 Jul 22 20:11 input.tar.gz
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc     15095 Jul 22 20:11 start_atlas.sh
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc         0 Jul 22 20:11 boinc_lockfile
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc      2587 Jul 22 20:11 pandaJob.out
[2025-07-23 02:36:05] -rw------- 1 boinc boinc    977712 Jul 22 20:11 agis_schedconf.cvmfs.json
[2025-07-23 02:36:05] drwx------ 4 boinc boinc      4096 Jul 22 20:11 pilot3
[2025-07-23 02:36:05] -rw------- 1 boinc boinc 307526214 Jul 23 02:34 HITS.45697490._000524.pool.root.1
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc       531 Jul 23 02:34 boinc_task_state.xml
[2025-07-23 02:36:05] -rw------- 1 boinc boinc        95 Jul 23 02:35 pilot_heartbeat.json
[2025-07-23 02:36:05] -rw------- 1 boinc boinc      1023 Jul 23 02:35 memory_monitor_summary.json
[2025-07-23 02:36:05] -rw------- 1 boinc boinc   1593031 Jul 23 02:35 agis_ddmendpoints.agis.ALL.json
[2025-07-23 02:36:05] -rw------- 1 boinc boinc    427326 Jul 23 02:35 log.45697490._000524.job.log.tgz.1
[2025-07-23 02:36:05] -rw------- 1 boinc boinc      7759 Jul 23 02:35 heartbeat.json
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc        28 Jul 23 02:35 wrapper_checkpoint.txt
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc      8192 Jul 23 02:35 boinc_mmap_file
[2025-07-23 02:36:05] -rw------- 1 boinc boinc       746 Jul 23 02:36 pilotlog.txt
[2025-07-23 02:36:05] -rw------- 1 boinc boinc   2041557 Jul 23 02:36 log.45697490._000524.job.log.1
[2025-07-23 02:36:05] -rw------- 1 boinc boinc       357 Jul 23 02:36 output.list
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc       620 Jul 23 02:36 runtime_log
[2025-07-23 02:36:05] -rw------- 1 boinc boinc   2488320 Jul 23 02:36 result.tar.gz
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc      8616 Jul 23 02:36 runtime_log.err
[2025-07-23 02:36:05] -rw------- 1 boinc boinc       646 Jul 23 02:36 fSbKDmRxQy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiKJLDm6unRbm.diag
[2025-07-23 02:36:05] -rw-r--r-- 1 boinc boinc     21248 Jul 23 02:36 stderr.txt
[2025-07-23 02:36:05] HITS file was successfully produced:
[2025-07-23 02:36:05] -rw------- 1 boinc boinc 307526214 Jul 23 02:34 shared/HITS.pool.root.1
[2025-07-23 02:36:05]  *** Contents of shared directory: ***
[2025-07-23 02:36:05] total 640568
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc 345352856 Jul 22 20:11 ATLAS.root_0
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc    542904 Jul 22 20:11 input.tar.gz
[2025-07-23 02:36:05] -rw-r--r-- 2 boinc boinc     15095 Jul 22 20:11 start_atlas.sh
[2025-07-23 02:36:05] -rw------- 1 boinc boinc 307526214 Jul 23 02:34 HITS.pool.root.1
[2025-07-23 02:36:05] -rw------- 1 boinc boinc   2488320 Jul 23 02:36 result.tar.gz
02:36:07 (207622): run_atlas exited; CPU time 87318.822638
02:36:07 (207622): called boinc_finish(0)

</stderr_txt>
]]>

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