Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:55:53 (3339903): wrapper (7.7.26015): starting
09:55:53 (3339903): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 09:55:53] Arguments: --nthreads 12
[2025-07-22 09:55:53] Threads: 12
[2025-07-22 09:55:53] Checking for CVMFS
[2025-07-22 09:55:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 09:55:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 09:55:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 09:55:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 09:55:56] 2.11.5.0 6468 30214 305932 148627 0 448 32399877 45568000 22974 130560 0 236448156 99.768 158357692 26384 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-22 09:55:56] CVMFS is ok
[2025-07-22 09:55:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 09:55:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 09:55:56] Further information can be found at the LHC@home message board.
[2025-07-22 09:55:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 09:55:56] Checking for apptainer binary...
[2025-07-22 09:55:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 09:55:56] Running /usr/bin/apptainer --version
[2025-07-22 09:55:56] apptainer version 1.4.1-1.el9
[2025-07-22 09:55:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 09:55:57] wns0074.triumf.lcg
[2025-07-22 09:55:57] apptainer works
[2025-07-22 09:55:57] Set ATHENA_PROC_NUMBER=12
[2025-07-22 09:55:57] Set ATHENA_CORE_NUMBER=12
[2025-07-22 09:55:57] Starting ATLAS job with PandaID=6742336318
[2025-07-22 09:55:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 10:00:46]  *** The last 200 lines of the pilot log: ***
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | wrong length of table data, x=[1753203450.0], y=[1867.0] (must be same and length>=4)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | could have reported an average CPU frequency of 2658 MHz (4 samples)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . Timing measurements:
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . get job = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . initial setup = 4 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload setup = 16 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-in = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload execution = 36 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-out = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . log creation = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742336318/pilotlog.txt
[2025-07-22 10:00:46] 2025-07-22 17:00:12,076 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 10:00:46] - Log from pilotlog.txt -
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742336318/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | extracted standard info from prmon json
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | wrong length of table data, x=[1753203450.0], y=[1867.0] (must be same and length>=4)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | could have reported an average CPU frequency of 2658 MHz (4 samples)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . Timing measurements:
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . get job = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . initial setup = 4 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload setup = 16 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-in = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload execution = 36 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-out = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . log creation = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742336318/pilotlog.txt
[2025-07-22 10:00:46] 2025-07-22 17:00:12,077 | WARNING  | 
[2025-07-22 10:00:46] [begin log extracts]
[2025-07-22 10:00:46] - Log from pilotlog.txt -
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6742336318/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | extracted standard info from prmon json
[2025-07-22 10:00:46] 2025-07-22 17:00:12,014 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 10:00:46] 2025-07-22 17:00:12,015 | WARNING  | wrong length of table data, x=[1753203450.0], y=[1867.0] (must be same and length>=4)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | could have reported an average CPU frequency of 2658 MHz (4 samples)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . Timing measurements:
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . get job = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . initial setup = 4 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload setup = 16 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-in = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . payload execution = 36 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . stage-out = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | . log creation = 0 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | ..............................
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 10:00:46] 2025-07-22 17:00:12,016 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6742336318/pilotlog.txt
[2025-07-22 10:00:46] [end log extracts]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,077 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,078 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 10:00:46] 2025-07-22 17:00:12,144 | INFO     | 
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | job summary report
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | --------------------------------------------------
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | PanDA job id: 6742336318
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | task id: 45697532
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 09:57:49,147 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | pilot state: failed 
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | transexitcode: 65
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | exeerrorcode: 65
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | exitcode: 65
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | cpuconsumptiontime: 16 s
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | nevents: 0
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | neventsw: 0
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | pid: 3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | pgrp: 3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | corecount: 12
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | event service: False
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | sizes: {0: 2397471, 1: 2397471, 12: 2397499, 15: 2397789, 22: 2397817, 57: 2421227, 58: 2421331, 60: 2425679, 191: 2425817}
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | --------------------------------------------------
[2025-07-22 10:00:46] 2025-07-22 17:00:12,145 | INFO     | 
[2025-07-22 10:00:46] 2025-07-22 17:00:12,146 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 10:00:46] 2025-07-22 17:00:12,355 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,355 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,355 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 10:00:46] 2025-07-22 17:00:12,356 | INFO     | job 6742336318 has completed (purged errors)
[2025-07-22 10:00:46] 2025-07-22 17:00:12,357 | INFO     | overall cleanup function is called
[2025-07-22 10:00:46] 2025-07-22 17:00:13,113 | INFO     | PID=3347090 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 10:00:46] 2025-07-22 17:00:13,113 | INFO     | .. there are 49 such processes running
[2025-07-22 10:00:46] 2025-07-22 17:00:13,364 | INFO     | --- collectZombieJob: --- 10, [3357216]
[2025-07-22 10:00:46] 2025-07-22 17:00:13,364 | INFO     | zombie collector waiting for pid 3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:13,364 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 10:00:46] 2025-07-22 17:00:13,364 | INFO     | collected zombie processes
[2025-07-22 10:00:46] 2025-07-22 17:00:13,364 | INFO     | will attempt to kill all subprocesses of pid=3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:14,001 | INFO     | process IDs to be killed: [3357216] (in reverse order)
[2025-07-22 10:00:46] 2025-07-22 17:00:14,130 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 10:00:46] 2025-07-22 17:00:14,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 10:00:46] 2025-07-22 17:00:14,169 | INFO     | did not find any defunct processes belonging to 3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:14,197 | INFO     | did not find any defunct processes belonging to 3357216
[2025-07-22 10:00:46] 2025-07-22 17:00:14,197 | INFO     | ready for new job
[2025-07-22 10:00:46] 2025-07-22 17:00:14,197 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 10:00:46] 2025-07-22 17:00:14,198 | INFO     | ***************************************
[2025-07-22 10:00:46] 2025-07-22 17:00:14,198 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 10:00:46] 2025-07-22 17:00:14,198 | INFO     | ***************************************
[2025-07-22 10:00:46] 2025-07-22 17:00:14,198 | INFO     | 
[2025-07-22 10:00:46] 2025-07-22 17:00:14,206 | INFO     | architecture information:
[2025-07-22 10:00:46] 2025-07-22 17:00:14,219 | INFO     | executing command: cat /etc/os-release
[2025-07-22 10:00:46] 2025-07-22 17:00:14,302 | INFO     | cat /etc/os-release:
[2025-07-22 10:00:46] NAME="CentOS Linux"
[2025-07-22 10:00:46] VERSION="7 (Core)"
[2025-07-22 10:00:46] ID="centos"
[2025-07-22 10:00:46] ID_LIKE="rhel fedora"
[2025-07-22 10:00:46] VERSION_ID="7"
[2025-07-22 10:00:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 10:00:46] ANSI_COLOR="0;31"
[2025-07-22 10:00:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 10:00:46] HOME_URL="https://www.centos.org/"
[2025-07-22 10:00:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 10:00:46] 
[2025-07-22 10:00:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 10:00:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 10:00:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 10:00:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 10:00:46] 
[2025-07-22 10:00:46] 2025-07-22 17:00:14,302 | INFO     | ***************************************
[2025-07-22 10:00:46] 2025-07-22 17:00:14,806 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 10:00:46] 2025-07-22 17:00:14,827 | INFO     | sufficient remaining disk space (1712340336640 B)
[2025-07-22 10:00:46] 2025-07-22 17:00:14,827 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 10:00:46] 2025-07-22 17:00:14,827 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 10:00:46] 2025-07-22 17:00:14,827 | INFO     | update_server=False
[2025-07-22 10:00:46] 2025-07-22 17:00:14,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 10:00:46] 2025-07-22 17:00:14,828 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 10:00:46] 2025-07-22 17:00:14,942 | INFO     | all payload control threads have been joined
[2025-07-22 10:00:46] 2025-07-22 17:00:15,161 | INFO     | all data control threads have been joined
[2025-07-22 10:00:46] 2025-07-22 17:00:15,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:00:46] 2025-07-22 17:00:15,406 | INFO     | aborting loop
[2025-07-22 10:00:46] 2025-07-22 17:00:15,834 | INFO     | [job] retrieve thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:15,948 | INFO     | [payload] control thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,017 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,167 | INFO     | [data] control thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,255 | INFO     | all job control threads have been joined
[2025-07-22 10:00:46] 2025-07-22 17:00:16,282 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,314 | INFO     | [payload] failed_post thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,412 | INFO     | [job] job monitor thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:16,836 | INFO     | [data] copytool_out thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,177 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:00:46] 2025-07-22 17:00:17,201 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,203 | INFO     | [data] copytool_in thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,228 | INFO     | [job] validate thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,261 | INFO     | [job] control thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,408 | INFO     | [payload] validate_post thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:17,731 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 10:00:46] 2025-07-22 17:00:18,183 | INFO     | [job] queue monitor thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:21,748 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 10:00:46] 2025-07-22 17:00:23,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140047478327104)>', '<ExcThread(monitor, started 140046795532032)>']
[2025-07-22 10:00:46] 2025-07-22 17:00:28,796 | INFO     | all workflow threads have been joined
[2025-07-22 10:00:46] 2025-07-22 17:00:28,796 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 10:00:46] 2025-07-22 17:00:28,796 | INFO     | traces error code: 0
[2025-07-22 10:00:46] 2025-07-22 17:00:28,796 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 10:00:46] 2025-07-22 17:00:45,492 | INFO     | PID=3347090 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | INFO     | .. there are 49 such processes running
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 10:00:46] 2025-07-22 17:00:45,493 | INFO     | [monitor] control thread has ended
[2025-07-22 10:00:46] 2025-07-22 17:00:45,621 [wrapper] ==== pilot stdout END ====
[2025-07-22 10:00:46] 2025-07-22 17:00:45,624 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 10:00:46] 2025-07-22 17:00:45,625 [wrapper] pilotpid: 3347090
[2025-07-22 10:00:46] 2025-07-22 17:00:45,627 [wrapper] Pilot exit status: 0
[2025-07-22 10:00:46] 2025-07-22 17:00:45,681 [wrapper] pandaids: 6742336318
[2025-07-22 10:00:46] 2025-07-22 17:00:45,772 [wrapper] cleanup supervisor_pilot 3347109 3347091
[2025-07-22 10:00:46] 2025-07-22 17:00:45,775 [wrapper] Test setup, not cleaning
[2025-07-22 10:00:46] 2025-07-22 17:00:45,777 [wrapper] apfmon messages muted
[2025-07-22 10:00:46] 2025-07-22 17:00:45,779 [wrapper] ==== wrapper stdout END ====
[2025-07-22 10:00:46] 2025-07-22 17:00:45,781 [wrapper] ==== wrapper stderr END ====
[2025-07-22 10:00:46]  *** Error codes and diagnostics ***
[2025-07-22 10:00:46]     "exeErrorCode": 65,
[2025-07-22 10:00:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 10:00:46]     "pilotErrorCode": 1305,
[2025-07-22 10:00:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 10:00:46]  *** Listing of results directory ***
[2025-07-22 10:00:46] total 325836
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc    530466 Jul 22 06:16 pilot3.tar.gz
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc      5112 Jul 22 06:41 queuedata.json
[2025-07-22 10:00:46] -rwx------. 1 boinc boinc     36292 Jul 22 06:42 runpilot2-wrapper.sh
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc       100 Jul 22 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 10:00:46] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 09:55 run_atlas
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc       105 Jul 22 09:55 job.xml
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc      6596 Jul 22 09:55 init_data.xml
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc 329577623 Jul 22 09:55 EVNT.45697530._000003.pool.root.1
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc     15095 Jul 22 09:55 start_atlas.sh
[2025-07-22 10:00:46] drwxrwx--x. 2 boinc boinc      4096 Jul 22 09:55 shared
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc    542913 Jul 22 09:55 input.tar.gz
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc         0 Jul 22 09:55 boinc_lockfile
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc      2608 Jul 22 09:55 pandaJob.out
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc    977696 Jul 22 09:56 agis_schedconf.cvmfs.json
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc   1593031 Jul 22 09:56 agis_ddmendpoints.agis.ALL.json
[2025-07-22 10:00:46] drwx------. 4 boinc boinc      4096 Jul 22 09:56 pilot3
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc       991 Jul 22 09:57 memory_monitor_summary.json
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc     21767 Jul 22 09:58 log.45697532._005650.job.log.tgz.1
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc      8420 Jul 22 10:00 heartbeat.json
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc       523 Jul 22 10:00 boinc_task_state.xml
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc        22 Jul 22 10:00 wrapper_checkpoint.txt
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc      8192 Jul 22 10:00 boinc_mmap_file
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc       823 Jul 22 10:00 pilotlog.txt
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc        95 Jul 22 10:00 pilot_heartbeat.json
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc     79986 Jul 22 10:00 log.45697532._005650.job.log.1
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc       188 Jul 22 10:00 output.list
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc       620 Jul 22 10:00 runtime_log
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc    122880 Jul 22 10:00 result.tar.gz
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc      8485 Jul 22 10:00 runtime_log.err
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc       644 Jul 22 10:00 CjbKDmFRSy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKTJLDmFj2Brm.diag
[2025-07-22 10:00:46] -rw-r--r--. 1 boinc boinc     21931 Jul 22 10:00 stderr.txt
[2025-07-22 10:00:46] No HITS result produced
[2025-07-22 10:00:46]  *** Contents of shared directory: ***
[2025-07-22 10:00:46] total 322528
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc 329577623 Jul 22 09:55 ATLAS.root_0
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc     15095 Jul 22 09:55 start_atlas.sh
[2025-07-22 10:00:46] -rw-r--r--. 2 boinc boinc    542913 Jul 22 09:55 input.tar.gz
[2025-07-22 10:00:46] -rw-------. 1 boinc boinc    122880 Jul 22 10:00 result.tar.gz
10:00:48 (3339903): run_atlas exited; CPU time 25.567125
10:00:48 (3339903): called boinc_finish(0)

</stderr_txt>
]]>

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