Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:12:31 (15931): wrapper (7.7.26015): starting
12:12:31 (15931): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 12:12:31] Arguments: --nthreads 8
[2025-07-22 12:12:31] Threads: 8
[2025-07-22 12:12:31] Checking for CVMFS
[2025-07-22 12:12:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 12:12:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 12:12:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 12:12:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 12:12:31] 2.11.2.0 2817 105026 85884 148626 3 57 10536630 20275200 1 130560 0 25077666 99.943 9838791 10888 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 12:12:31] CVMFS is ok
[2025-07-22 12:12:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 12:12:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 12:12:31] Further information can be found at the LHC@home message board.
[2025-07-22 12:12:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 12:12:31] Checking for apptainer binary...
[2025-07-22 12:12:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 12:12:31] Running /usr/bin/apptainer --version
[2025-07-22 12:12:31] apptainer version 1.3.2-1.el7
[2025-07-22 12:12:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 12:12:33] c-204-21.aglt2.org
[2025-07-22 12:12:33] apptainer works
[2025-07-22 12:12:33] Set ATHENA_PROC_NUMBER=8
[2025-07-22 12:12:33] Set ATHENA_CORE_NUMBER=8
[2025-07-22 12:12:33] Starting ATLAS job with PandaID=6741686309
[2025-07-22 12:12:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 15:12:12]  *** The last 200 lines of the pilot log: ***
[2025-07-22 15:12:12] 2025-07-22 19:11:41,151 | INFO     | mean y: 2529442.727272727
[2025-07-22 15:12:12] 2025-07-22 19:11:41,151 | INFO     | -- intersect: -11410278212.157331
[2025-07-22 15:12:12] 2025-07-22 19:11:41,152 | INFO     | intersect: -11410278212.157331
[2025-07-22 15:12:12] 2025-07-22 19:11:41,152 | INFO     | chi2: 2.277543596588133
[2025-07-22 15:12:12] 2025-07-22 19:11:41,152 | INFO     | sum of square deviations: 1550429070.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,153 | INFO     | sum of deviations: 22446251313.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,154 | INFO     | mean x: 1753205988.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,154 | INFO     | mean y: 2541606.3333333335
[2025-07-22 15:12:12] 2025-07-22 19:11:41,154 | INFO     | -- intersect: -25379401348.402718
[2025-07-22 15:12:12] 2025-07-22 19:11:41,154 | INFO     | intersect: -25379401348.402718
[2025-07-22 15:12:12] 2025-07-22 19:11:41,155 | INFO     | sufficient remaining disk space (18299748352 B)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,155 | INFO     | chi2: 1.5066706102008276
[2025-07-22 15:12:12] 2025-07-22 19:11:41,155 | INFO     | current chi2=1.5066706102008276 (change=33.84668410045408 %)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,156 | INFO     | sum of square deviations: 1418361477.5
[2025-07-22 15:12:12] 2025-07-22 19:11:41,156 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,157 | INFO     | sum of deviations: 21784677948.000004
[2025-07-22 15:12:12] 2025-07-22 19:11:41,157 | INFO     | mean x: 1753205835.5
[2025-07-22 15:12:12] 2025-07-22 19:11:41,157 | INFO     | mean y: 2540842.120481928
[2025-07-22 15:12:12] 2025-07-22 19:11:41,157 | INFO     | -- intersect: -26925026712.971813
[2025-07-22 15:12:12] 2025-07-22 19:11:41,157 | INFO     | intersect: -26925026712.971813
[2025-07-22 15:12:12] 2025-07-22 19:11:41,158 | INFO     | chi2: 1.5078063505697432
[2025-07-22 15:12:12] 2025-07-22 19:11:41,158 | INFO     | current chi2=1.5078063505697432 (change=-0.07538080063592871 %)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,158 | INFO     | right removable region: 165
[2025-07-22 15:12:12] 2025-07-22 19:11:41,158 | INFO     | sum of square deviations: 1550429070.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,159 | INFO     | sum of deviations: -16671814657.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,160 | INFO     | mean x: 1753206293.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,160 | INFO     | mean y: 2559232.5263157897
[2025-07-22 15:12:12] 2025-07-22 19:11:41,160 | INFO     | -- intersect: 18854844021.26679
[2025-07-22 15:12:12] 2025-07-22 19:11:41,160 | INFO     | intersect: 18854844021.26679
[2025-07-22 15:12:12] 2025-07-22 19:11:41,160 | INFO     | chi2: 0.861142478387908
[2025-07-22 15:12:12] 2025-07-22 19:11:41,161 | INFO     | current chi2=0.861142478387908 (change=62.18985754310303 %)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,161 | INFO     | sum of square deviations: 1418361477.5
[2025-07-22 15:12:12] 2025-07-22 19:11:41,162 | INFO     | sum of deviations: -21404129020.999992
[2025-07-22 15:12:12] 2025-07-22 19:11:41,162 | INFO     | mean x: 1753206445.5
[2025-07-22 15:12:12] 2025-07-22 19:11:41,162 | INFO     | mean y: 2564627.5421686745
[2025-07-22 15:12:12] 2025-07-22 19:11:41,162 | INFO     | -- intersect: 26459753119.486946
[2025-07-22 15:12:12] 2025-07-22 19:11:41,162 | INFO     | intersect: 26459753119.486946
[2025-07-22 15:12:12] 2025-07-22 19:11:41,163 | INFO     | chi2: 0.8074759666236049
[2025-07-22 15:12:12] 2025-07-22 19:11:41,163 | INFO     | current chi2=0.8074759666236049 (change=6.232013065337217 %)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,163 | INFO     | left removable region: 20
[2025-07-22 15:12:12] 2025-07-22 19:11:41,163 | INFO     | sum of square deviations: 945282840.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,164 | INFO     | sum of deviations: -9026828617.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,165 | INFO     | mean x: 1753206415.0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,165 | INFO     | mean y: 2578554.7379310345
[2025-07-22 15:12:12] 2025-07-22 19:11:41,165 | INFO     | -- intersect: 16744545264.331408
[2025-07-22 15:12:12] 2025-07-22 19:11:41,165 | INFO     | intersect: 16744545264.331408
[2025-07-22 15:12:12] 2025-07-22 19:11:41,165 | INFO     | chi2: 0.011015687423649126
[2025-07-22 15:12:12] 2025-07-22 19:11:41,166 | INFO     | -- intersect: 16744545264.331408
[2025-07-22 15:12:12] 2025-07-22 19:11:41,166 | INFO     | current memory leak: -9.55 B/s (using 145 data points, chi2=0.01)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,166 | INFO     | could have reported an average CPU frequency of 2025 MHz (9 samples)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | ..............................
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | . Timing measurements:
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | . get job = 0 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | . initial setup = 2 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | . payload setup = 11 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,167 | INFO     | . stage-in = 0 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,168 | INFO     | . payload execution = 10690 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,168 | INFO     | . stage-out = 0 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,168 | INFO     | . log creation = 0 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,168 | INFO     | ..............................
[2025-07-22 15:12:12] 2025-07-22 19:11:41,261 | INFO     | 
[2025-07-22 15:12:12] 2025-07-22 19:11:41,261 | INFO     | job summary report
[2025-07-22 15:12:12] 2025-07-22 19:11:41,261 | INFO     | --------------------------------------------------
[2025-07-22 15:12:12] 2025-07-22 19:11:41,262 | INFO     | PanDA job id: 6741686309
[2025-07-22 15:12:12] 2025-07-22 19:11:41,262 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6741686309: 3719619 B (within 2537553920 B limit)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,262 | INFO     | task id: 45697523
[2025-07-22 15:12:12] 2025-07-22 19:11:41,262 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6741686309/HITS.45697523._001715.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,263 | INFO     | errors: (none)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,263 | INFO     | total size of present files: 0 B (workdir size: 3719619 B)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,263 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 15:12:12] 2025-07-22 19:11:41,263 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6741686309/HITS.45697523._001715.pool.root.1 since it does not exist
[2025-07-22 15:12:12] 2025-07-22 19:11:41,263 | INFO     | pilot state: finished 
[2025-07-22 15:12:12] 2025-07-22 19:11:41,264 | INFO     | transexitcode: 0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,264 | INFO     | exeerrorcode: 0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,264 | INFO     | exeerrordiag: 
[2025-07-22 15:12:12] 2025-07-22 19:11:41,264 | INFO     | exitcode: 0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | exitmsg: OK
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | cpuconsumptiontime: 79956 s
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | nevents: 400
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | neventsw: 0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | pid: 26119
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | pgrp: 26119
[2025-07-22 15:12:12] 2025-07-22 19:11:41,265 | INFO     | corecount: 8
[2025-07-22 15:12:12] 2025-07-22 19:11:41,266 | INFO     | event service: False
[2025-07-22 15:12:12] 2025-07-22 19:11:41,266 | INFO     | sizes: {0: 2397380, 1: 2397579, 7: 2397841, 12: 2397869, 10705: 2426827, 10706: 2426826, 10708: 2436064, 10715: 2436266}
[2025-07-22 15:12:12] 2025-07-22 19:11:41,266 | INFO     | --------------------------------------------------
[2025-07-22 15:12:12] 2025-07-22 19:11:41,266 | INFO     | 
[2025-07-22 15:12:12] 2025-07-22 19:11:41,266 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-22 15:12:12] 2025-07-22 19:11:41,293 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,323 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,326 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,326 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 15:12:12] 2025-07-22 19:11:41,327 | INFO     | job 6741686309 has completed (purged errors)
[2025-07-22 15:12:12] 2025-07-22 19:11:41,327 | INFO     | overall cleanup function is called
[2025-07-22 15:12:12] 2025-07-22 19:11:41,371 | INFO     | number of running child processes to parent process 26119: 1
[2025-07-22 15:12:12] 2025-07-22 19:11:41,371 | INFO     | maximum number of monitored processes: 6
[2025-07-22 15:12:12] 2025-07-22 19:11:41,371 | INFO     | aborting job monitoring since job object (job id=6741686309) has expired
[2025-07-22 15:12:12] 2025-07-22 19:11:42,335 | INFO     | --- collectZombieJob: --- 10, [26119]
[2025-07-22 15:12:12] 2025-07-22 19:11:42,336 | INFO     | zombie collector waiting for pid 26119
[2025-07-22 15:12:12] 2025-07-22 19:11:42,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 15:12:12] 2025-07-22 19:11:42,336 | INFO     | collected zombie processes
[2025-07-22 15:12:12] 2025-07-22 19:11:42,336 | INFO     | will attempt to kill all subprocesses of pid=26119
[2025-07-22 15:12:12] 2025-07-22 19:11:42,425 | INFO     | process IDs to be killed: [26119] (in reverse order)
[2025-07-22 15:12:12] 2025-07-22 19:11:42,480 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 15:12:12] 2025-07-22 19:11:42,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 15:12:12] 2025-07-22 19:11:42,485 | INFO     | did not find any defunct processes belonging to 26119
[2025-07-22 15:12:12] 2025-07-22 19:11:42,487 | INFO     | did not find any defunct processes belonging to 26119
[2025-07-22 15:12:12] 2025-07-22 19:11:42,488 | INFO     | ready for new job
[2025-07-22 15:12:12] 2025-07-22 19:11:42,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 15:12:12] 2025-07-22 19:11:42,489 | INFO     | ***************************************
[2025-07-22 15:12:12] 2025-07-22 19:11:42,490 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 15:12:12] 2025-07-22 19:11:42,490 | INFO     | ***************************************
[2025-07-22 15:12:12] 2025-07-22 19:11:42,490 | INFO     | 
[2025-07-22 15:12:12] 2025-07-22 19:11:42,490 | INFO     | architecture information:
[2025-07-22 15:12:12] 2025-07-22 19:11:42,491 | INFO     | executing command: cat /etc/os-release
[2025-07-22 15:12:12] 2025-07-22 19:11:42,509 | INFO     | cat /etc/os-release:
[2025-07-22 15:12:12] NAME="CentOS Linux"
[2025-07-22 15:12:12] VERSION="7 (Core)"
[2025-07-22 15:12:12] ID="centos"
[2025-07-22 15:12:12] ID_LIKE="rhel fedora"
[2025-07-22 15:12:12] VERSION_ID="7"
[2025-07-22 15:12:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 15:12:12] ANSI_COLOR="0;31"
[2025-07-22 15:12:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 15:12:12] HOME_URL="https://www.centos.org/"
[2025-07-22 15:12:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 15:12:12] 
[2025-07-22 15:12:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 15:12:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 15:12:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 15:12:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 15:12:12] 
[2025-07-22 15:12:12] 2025-07-22 19:11:42,509 | INFO     | ***************************************
[2025-07-22 15:12:12] 2025-07-22 19:11:43,011 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-22 15:12:12] 2025-07-22 19:11:43,072 | INFO     | sufficient remaining disk space (18304991232 B)
[2025-07-22 15:12:12] 2025-07-22 19:11:43,072 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 15:12:12] 2025-07-22 19:11:43,073 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 15:12:12] 2025-07-22 19:11:43,073 | INFO     | update_server=False
[2025-07-22 15:12:12] 2025-07-22 19:11:43,073 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 15:12:12] 2025-07-22 19:11:43,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 15:12:12] 2025-07-22 19:11:43,074 | INFO     | aborting loop
[2025-07-22 15:12:12] 2025-07-22 19:11:43,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 15:12:12] 2025-07-22 19:11:43,515 | INFO     | all data control threads have been joined
[2025-07-22 15:12:12] 2025-07-22 19:11:43,571 | INFO     | all job control threads have been joined
[2025-07-22 15:12:12] 2025-07-22 19:11:43,884 | INFO     | all payload control threads have been joined
[2025-07-22 15:12:12] 2025-07-22 19:11:43,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 15:12:12] 2025-07-22 19:11:44,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 15:12:12] 2025-07-22 19:11:44,079 | INFO     | [job] retrieve thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,080 | INFO     | [job] job monitor thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,080 | INFO     | [job] queue monitor thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,239 | INFO     | [payload] validate_post thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,347 | INFO     | [job] validate thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,475 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,521 | INFO     | [data] control thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,548 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,573 | INFO     | [job] control thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,620 | INFO     | [data] copytool_in thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:44,890 | INFO     | [payload] control thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:45,119 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:45,276 | INFO     | [payload] failed_post thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:45,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:45,987 | INFO     | [data] copytool_out thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:48,072 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 15:12:12] 2025-07-22 19:11:48,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937302390592)>', '<ExcThread(monitor, started 139936711816960)>']
[2025-07-22 15:12:12] 2025-07-22 19:11:53,629 | INFO     | all workflow threads have been joined
[2025-07-22 15:12:12] 2025-07-22 19:11:53,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 15:12:12] 2025-07-22 19:11:53,630 | INFO     | traces error code: 0
[2025-07-22 15:12:12] 2025-07-22 19:11:53,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 15:12:12] 2025-07-22 19:12:12,471 | INFO     | PID=19537 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-22 15:12:12] 2025-07-22 19:12:12,472 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 15:12:12] 2025-07-22 19:12:12,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 15:12:12] 2025-07-22 19:12:12,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 15:12:12] 2025-07-22 19:12:12,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 15:12:12] 2025-07-22 19:12:12,473 | INFO     | [monitor] control thread has ended
[2025-07-22 15:12:12] 2025-07-22 19:12:12,592 [wrapper] ==== pilot stdout END ====
[2025-07-22 15:12:12] 2025-07-22 19:12:12,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 15:12:12] 2025-07-22 19:12:12,602 [wrapper] pilotpid: 19537
[2025-07-22 15:12:12] 2025-07-22 19:12:12,607 [wrapper] Pilot exit status: 0
[2025-07-22 15:12:12] 2025-07-22 19:12:12,627 [wrapper] pandaids: 6741686309
[2025-07-22 15:12:12] 2025-07-22 19:12:12,673 [wrapper] cleanup supervisor_pilot 14577 19538
[2025-07-22 15:12:12] 2025-07-22 19:12:12,678 [wrapper] Test setup, not cleaning
[2025-07-22 15:12:12] 2025-07-22 19:12:12,683 [wrapper] apfmon messages muted
[2025-07-22 15:12:12] 2025-07-22 19:12:12,688 [wrapper] ==== wrapper stdout END ====
[2025-07-22 15:12:12] 2025-07-22 19:12:12,693 [wrapper] ==== wrapper stderr END ====
[2025-07-22 15:12:12]  *** Error codes and diagnostics ***
[2025-07-22 15:12:12]     "exeErrorCode": 0,
[2025-07-22 15:12:12]     "exeErrorDiag": "",
[2025-07-22 15:12:12]     "pilotErrorCode": 0,
[2025-07-22 15:12:12]     "pilotErrorDiag": "",
[2025-07-22 15:12:12]  *** Listing of results directory ***
[2025-07-22 15:12:12] total 574652
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas    530466 Jul 21 16:13 pilot3.tar.gz
[2025-07-22 15:12:12] -rwx------ 1 boincer umatlas     36292 Jul 21 16:39 runpilot2-wrapper.sh
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas      5112 Jul 21 16:40 queuedata.json
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas       100 Jul 22 12:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 15:12:12] -rwxr-xr-x 1 boincer umatlas      7986 Jul 22 12:12 run_atlas
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas       105 Jul 22 12:12 job.xml
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas 320982398 Jul 22 12:12 EVNT.45697521._000069.pool.root.1
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 22 12:12 start_atlas.sh
[2025-07-22 15:12:12] drwxrwx--x 2 boincer umatlas      4096 Jul 22 12:12 shared
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas    542897 Jul 22 12:12 input.tar.gz
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas         0 Jul 22 12:12 boinc_lockfile
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas      2634 Jul 22 12:12 pandaJob.out
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas    977704 Jul 22 12:12 agis_schedconf.cvmfs.json
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas   1593031 Jul 22 12:12 agis_ddmendpoints.agis.ALL.json
[2025-07-22 15:12:12] drwx------ 4 boincer umatlas      4096 Jul 22 12:12 pilot3
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas 260933100 Jul 22 15:10 HITS.45697523._001715.pool.root.1
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas       530 Jul 22 15:10 boinc_task_state.xml
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas        95 Jul 22 15:11 pilot_heartbeat.json
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas      1054 Jul 22 15:11 memory_monitor_summary.json
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas    366033 Jul 22 15:11 log.45697523._001715.job.log.tgz.1
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas      7852 Jul 22 15:11 heartbeat.json
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas      5904 Jul 22 15:11 init_data.xml
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas      8192 Jul 22 15:12 boinc_mmap_file
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas        28 Jul 22 15:12 wrapper_checkpoint.txt
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas       745 Jul 22 15:12 pilotlog.txt
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas    961890 Jul 22 15:12 log.45697523._001715.job.log.1
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas       357 Jul 22 15:12 output.list
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas       620 Jul 22 15:12 runtime_log
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas   1351680 Jul 22 15:12 result.tar.gz
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas      8661 Jul 22 15:12 runtime_log.err
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas       662 Jul 22 15:12 IFCMDmjTCy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgEGLDmc8YXEm.diag
[2025-07-22 15:12:12] -rw-r--r-- 1 boincer umatlas     21322 Jul 22 15:12 stderr.txt
[2025-07-22 15:12:12] HITS file was successfully produced:
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas 260933100 Jul 22 15:10 shared/HITS.pool.root.1
[2025-07-22 15:12:12]  *** Contents of shared directory: ***
[2025-07-22 15:12:12] total 570152
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas 320982398 Jul 22 12:12 ATLAS.root_0
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 22 12:12 start_atlas.sh
[2025-07-22 15:12:12] -rw-r--r-- 2 boincer umatlas    542897 Jul 22 12:12 input.tar.gz
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas 260933100 Jul 22 15:10 HITS.pool.root.1
[2025-07-22 15:12:12] -rw------- 1 boincer umatlas   1351680 Jul 22 15:12 result.tar.gz
15:12:14 (15931): run_atlas exited; CPU time 79895.018473
15:12:14 (15931): called boinc_finish(0)

</stderr_txt>
]]>

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