Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:01:59 (3074534): wrapper (7.7.26015): starting
12:01:59 (3074534): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 12:01:59] Arguments: --nthreads 8
[2025-07-22 12:01:59] Threads: 8
[2025-07-22 12:01:59] Checking for CVMFS
[2025-07-22 12:01:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 12:01:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 12:01:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 12:01:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 12:01:59] 2.13.1.0 116762 1407 174520 148626 0 188 32577051 40960000 11956 16776704 0 17714750 99.999 49837 37303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 12:01:59] CVMFS is ok
[2025-07-22 12:01:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 12:01:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 12:01:59] Further information can be found at the LHC@home message board.
[2025-07-22 12:01:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 12:01:59] Checking for apptainer binary...
[2025-07-22 12:01:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 12:01:59] Running /usr/bin/apptainer --version
[2025-07-22 12:01:59] apptainer version 1.4.1-1.el9
[2025-07-22 12:01:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 12:01:59] c-208-39.aglt2.org
[2025-07-22 12:01:59] apptainer works
[2025-07-22 12:01:59] Set ATHENA_PROC_NUMBER=8
[2025-07-22 12:01:59] Set ATHENA_CORE_NUMBER=8
[2025-07-22 12:01:59] Starting ATLAS job with PandaID=6741826130
[2025-07-22 12:01:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 13:17:48]  *** The last 200 lines of the pilot log: ***
[2025-07-22 13:17:48]  scope=mc23_13p6TeV
[2025-07-22 13:17:48]  status=None
[2025-07-22 13:17:48]  status_code=0
[2025-07-22 13:17:48]  storage_token=
[2025-07-22 13:17:48]  surl=/tmp/boinchome/slots/14/PanDA_Pilot-6741826130/log.45697532._004247.job.log.tgz.1
[2025-07-22 13:17:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/28/log.45697532._004247.job.log.tgz.1
[2025-07-22 13:17:48]  workdir=None
[2025-07-22 13:17:48] ]
[2025-07-22 13:17:48] 2025-07-22 17:17:09,510 | INFO     | transferring file log.45697532._004247.job.log.tgz.1 from /tmp/boinchome/slots/14/PanDA_Pilot-6741826130/log.45697532._004247.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-22 13:17:48] 2025-07-22 17:17:09,510 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/14/PanDA_Pilot-6741826130/log.45697532._004247.job.log.tgz.1 /tmp/boinchome/slots/14/log.45697532._004247.j
[2025-07-22 13:17:48] 2025-07-22 17:17:09,529 | INFO     | adding to output.list: log.45697532._004247.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/28/log.45697532._004247.job.log.tg
[2025-07-22 13:17:48] 2025-07-22 17:17:09,530 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 13:17:48] 2025-07-22 17:17:09,530 | INFO     | summary of transferred files:
[2025-07-22 13:17:48] 2025-07-22 17:17:09,530 | INFO     |  -- lfn=log.45697532._004247.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 13:17:48] 2025-07-22 17:17:09,530 | INFO     | stage-out finished correctly
[2025-07-22 13:17:48] 2025-07-22 17:17:11,677 | WARNING  | process 3085801 can no longer be monitored (due to stat problems) - aborting
[2025-07-22 13:17:48] 2025-07-22 17:17:11,678 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6741826130/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 13:17:48] 2025-07-22 17:17:11,678 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6741826130/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 13:17:48] 2025-07-22 17:17:12,035 | INFO     | number of running child processes to parent process 3085801: 1
[2025-07-22 13:17:48] 2025-07-22 17:17:12,035 | INFO     | maximum number of monitored processes: 6
[2025-07-22 13:17:48] 2025-07-22 17:17:12,567 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 13:17:48] 2025-07-22 17:17:12,639 | INFO     | job 6741826130 has state=finished
[2025-07-22 13:17:48] 2025-07-22 17:17:12,639 | INFO     | preparing for final server update for job 6741826130 in state='finished'
[2025-07-22 13:17:48] 2025-07-22 17:17:12,690 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-22 13:17:48] 2025-07-22 17:17:12,691 | INFO     | this job has now completed (state=finished)
[2025-07-22 13:17:48] 2025-07-22 17:17:12,691 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 13:17:48] 2025-07-22 17:17:12,691 | INFO     | log transfer has been attempted: DONE
[2025-07-22 13:17:48] 2025-07-22 17:17:12,691 | INFO     | job 6741826130 has finished - writing final server update
[2025-07-22 13:17:48] 2025-07-22 17:17:12,691 | INFO     | total number of processed events: 400 (read)
[2025-07-22 13:17:48] 2025-07-22 17:17:12,692 | INFO     | executing command: lscpu
[2025-07-22 13:17:48] 2025-07-22 17:17:12,747 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 13:17:48] 2025-07-22 17:17:13,310 | INFO     | PID=3078141 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-22 13:17:48] 2025-07-22 17:17:13,310 | INFO     | .. there are 15 such processes running
[2025-07-22 13:17:48] 2025-07-22 17:17:14,537 | INFO     | monitor loop #321: job 0:6741826130 is in state 'finished'
[2025-07-22 13:17:48] 2025-07-22 17:17:14,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,180 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 13:17:48] 2025-07-22 17:17:16,185 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3765.649531250001
[2025-07-22 13:17:48] 2025-07-22 17:17:16,198 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6741826130/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,199 | INFO     | extracted standard info from prmon json
[2025-07-22 13:17:48] 2025-07-22 17:17:16,199 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 13:17:48] 2025-07-22 17:17:16,199 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 13:17:48] 2025-07-22 17:17:16,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 13:17:48] 2025-07-22 17:17:16,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 13:17:48] 2025-07-22 17:17:16,200 | INFO     | fitting pss+swap vs Time
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | sum of square deviations: 93240818.0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | sum of deviations: 421737712.99999994
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | mean x: 1753202470.0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | mean y: 2577786.3880597013
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | -- intersect: -7927335485.326813
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | intersect: -7927335485.326813
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | chi2: 0.0003736760395238935
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | -- intersect: -7927335485.326813
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | current memory leak: 4.52 B/s (using 67 data points, chi2=0.00)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | could have reported an average CPU frequency of 3741 MHz (6 samples)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,201 | INFO     | ..............................
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . Timing measurements:
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . get job = 0 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . initial setup = 2 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . payload setup = 5 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . stage-in = 0 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . payload execution = 4477 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . stage-out = 0 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | . log creation = 0 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,202 | INFO     | ..............................
[2025-07-22 13:17:48] 2025-07-22 17:17:16,257 | INFO     | 
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | job summary report
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | --------------------------------------------------
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | PanDA job id: 6741826130
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | task id: 45697532
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | errors: (none)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | pilot state: finished 
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | transexitcode: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | exeerrorcode: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | exeerrordiag: 
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | exitcode: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | exitmsg: OK
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | cpuconsumptiontime: 33522 s
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | nevents: 400
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | neventsw: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | pid: 3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | pgrp: 3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | corecount: 8
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | event service: False
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | sizes: {0: 2397363, 1: 2397562, 4: 2397824, 11: 2397852, 4486: 2424194, 4487: 2433194, 4490: 2433378, 4493: 2433572}
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | --------------------------------------------------
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | 
[2025-07-22 13:17:48] 2025-07-22 17:17:16,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | job 6741826130 has completed (purged errors)
[2025-07-22 13:17:48] 2025-07-22 17:17:16,278 | INFO     | overall cleanup function is called
[2025-07-22 13:17:48] 2025-07-22 17:17:17,286 | INFO     | --- collectZombieJob: --- 10, [3085801]
[2025-07-22 13:17:48] 2025-07-22 17:17:17,286 | INFO     | zombie collector waiting for pid 3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:17,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 13:17:48] 2025-07-22 17:17:17,287 | INFO     | collected zombie processes
[2025-07-22 13:17:48] 2025-07-22 17:17:17,287 | INFO     | will attempt to kill all subprocesses of pid=3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:17,649 | INFO     | process IDs to be killed: [3085801] (in reverse order)
[2025-07-22 13:17:48] 2025-07-22 17:17:17,765 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 13:17:48] 2025-07-22 17:17:17,765 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 13:17:48] 2025-07-22 17:17:17,781 | INFO     | did not find any defunct processes belonging to 3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:17,795 | INFO     | did not find any defunct processes belonging to 3085801
[2025-07-22 13:17:48] 2025-07-22 17:17:17,795 | INFO     | ready for new job
[2025-07-22 13:17:48] 2025-07-22 17:17:17,795 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 13:17:48] 2025-07-22 17:17:17,797 | INFO     | ***************************************
[2025-07-22 13:17:48] 2025-07-22 17:17:17,797 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 13:17:48] 2025-07-22 17:17:17,797 | INFO     | ***************************************
[2025-07-22 13:17:48] 2025-07-22 17:17:17,797 | INFO     | 
[2025-07-22 13:17:48] 2025-07-22 17:17:17,801 | INFO     | architecture information:
[2025-07-22 13:17:48] 2025-07-22 17:17:17,802 | INFO     | executing command: cat /etc/os-release
[2025-07-22 13:17:48] 2025-07-22 17:17:17,816 | INFO     | cat /etc/os-release:
[2025-07-22 13:17:48] NAME="CentOS Linux"
[2025-07-22 13:17:48] VERSION="7 (Core)"
[2025-07-22 13:17:48] ID="centos"
[2025-07-22 13:17:48] ID_LIKE="rhel fedora"
[2025-07-22 13:17:48] VERSION_ID="7"
[2025-07-22 13:17:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 13:17:48] ANSI_COLOR="0;31"
[2025-07-22 13:17:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 13:17:48] HOME_URL="https://www.centos.org/"
[2025-07-22 13:17:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 13:17:48] 
[2025-07-22 13:17:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 13:17:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 13:17:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 13:17:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 13:17:48] 
[2025-07-22 13:17:48] 2025-07-22 17:17:17,817 | INFO     | ***************************************
[2025-07-22 13:17:48] 2025-07-22 17:17:18,320 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-07-22 13:17:48] 2025-07-22 17:17:18,337 | INFO     | sufficient remaining disk space (159216828416 B)
[2025-07-22 13:17:48] 2025-07-22 17:17:18,337 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 13:17:48] 2025-07-22 17:17:18,337 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 13:17:48] 2025-07-22 17:17:18,337 | INFO     | update_server=False
[2025-07-22 13:17:48] 2025-07-22 17:17:18,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 13:17:48] 2025-07-22 17:17:18,338 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 13:17:48] 2025-07-22 17:17:18,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 13:17:48] 2025-07-22 17:17:18,338 | INFO     | aborting loop
[2025-07-22 13:17:48] 2025-07-22 17:17:18,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 13:17:48] 2025-07-22 17:17:19,076 | INFO     | all payload control threads have been joined
[2025-07-22 13:17:48] 2025-07-22 17:17:19,143 | INFO     | all data control threads have been joined
[2025-07-22 13:17:48] 2025-07-22 17:17:19,343 | INFO     | [job] retrieve thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:19,344 | INFO     | [job] job monitor thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:19,659 | INFO     | [payload] validate_post thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:19,901 | INFO     | all job control threads have been joined
[2025-07-22 13:17:48] 2025-07-22 17:17:19,988 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,008 | INFO     | [job] validate thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,026 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,077 | INFO     | [payload] control thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,144 | INFO     | [data] control thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,231 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,344 | INFO     | [data] copytool_out thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,660 | INFO     | [payload] failed_post thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,747 | INFO     | [data] copytool_in thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:20,907 | INFO     | [job] control thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:21,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 13:17:48] 2025-07-22 17:17:22,274 | INFO     | [job] queue monitor thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:22,632 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:28,546 | INFO     | job.realtimelogging is not enabled
[2025-07-22 13:17:48] 2025-07-22 17:17:29,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 13:17:48] 2025-07-22 17:17:29,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584262858560)>', '<ExcThread(monitor, started 140583918094080)>']
[2025-07-22 13:17:48] 2025-07-22 17:17:34,620 | INFO     | all workflow threads have been joined
[2025-07-22 13:17:48] 2025-07-22 17:17:34,620 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 13:17:48] 2025-07-22 17:17:34,621 | INFO     | traces error code: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:34,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 13:17:48] 2025-07-22 17:17:47,847 | INFO     | PID=3078141 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 13:17:48] 2025-07-22 17:17:47,847 | INFO     | .. there are 16 such processes running
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | CRITICAL | thread 'MainThread' is not alive
[2025-07-22 13:17:48] 2025-07-22 17:17:47,848 | INFO     | [monitor] control thread has ended
[2025-07-22 13:17:48] 2025-07-22 17:17:47,950 [wrapper] ==== pilot stdout END ====
[2025-07-22 13:17:48] 2025-07-22 17:17:47,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 13:17:48] 2025-07-22 17:17:47,955 [wrapper] pilotpid: 3078141
[2025-07-22 13:17:48] 2025-07-22 17:17:47,958 [wrapper] Pilot exit status: 0
[2025-07-22 13:17:48] 2025-07-22 17:17:47,965 [wrapper] pandaids: 6741826130
[2025-07-22 13:17:48] 2025-07-22 17:17:48,047 [wrapper] cleanup supervisor_pilot 3495210 3078142
[2025-07-22 13:17:48] 2025-07-22 17:17:48,049 [wrapper] Test setup, not cleaning
[2025-07-22 13:17:48] 2025-07-22 17:17:48,050 [wrapper] apfmon messages muted
[2025-07-22 13:17:48] 2025-07-22 17:17:48,052 [wrapper] ==== wrapper stdout END ====
[2025-07-22 13:17:48] 2025-07-22 17:17:48,054 [wrapper] ==== wrapper stderr END ====
[2025-07-22 13:17:48]  *** Error codes and diagnostics ***
[2025-07-22 13:17:48]     "exeErrorCode": 0,
[2025-07-22 13:17:48]     "exeErrorDiag": "",
[2025-07-22 13:17:48]     "pilotErrorCode": 0,
[2025-07-22 13:17:48]     "pilotErrorDiag": "",
[2025-07-22 13:17:48]  *** Listing of results directory ***
[2025-07-22 13:17:48] total 609664
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas    530466 Jul 21 20:15 pilot3.tar.gz
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas      5112 Jul 21 20:17 queuedata.json
[2025-07-22 13:17:48] -rwx------. 1 boincer umatlas     36292 Jul 21 20:18 runpilot2-wrapper.sh
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas       100 Jul 22 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 13:17:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 12:01 run_atlas
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas       105 Jul 22 12:01 job.xml
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas 332336787 Jul 22 12:01 EVNT.45697530._000170.pool.root.1
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 12:01 start_atlas.sh
[2025-07-22 13:17:48] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 12:01 shared
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas    542898 Jul 22 12:01 input.tar.gz
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas         0 Jul 22 12:01 boinc_lockfile
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas      2611 Jul 22 12:01 pandaJob.out
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas    977704 Jul 22 12:02 agis_schedconf.cvmfs.json
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas   1593031 Jul 22 12:02 agis_ddmendpoints.agis.ALL.json
[2025-07-22 13:17:48] drwx------. 4 boincer umatlas      4096 Jul 22 12:02 pilot3
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas      7173 Jul 22 13:09 init_data.xml
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas       529 Jul 22 13:16 boinc_task_state.xml
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas 286570741 Jul 22 13:16 HITS.45697532._004247.pool.root.1
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas      1031 Jul 22 13:17 memory_monitor_summary.json
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas    314044 Jul 22 13:17 log.45697532._004247.job.log.tgz.1
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas      7764 Jul 22 13:17 heartbeat.json
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas        27 Jul 22 13:17 wrapper_checkpoint.txt
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 13:17 boinc_mmap_file
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas        95 Jul 22 13:17 pilot_heartbeat.json
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas       893 Jul 22 13:17 pilotlog.txt
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas    442831 Jul 22 13:17 log.45697532._004247.job.log.1
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas       357 Jul 22 13:17 output.list
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas       620 Jul 22 13:17 runtime_log
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas    778240 Jul 22 13:17 result.tar.gz
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas      8674 Jul 22 13:17 runtime_log.err
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas       651 Jul 22 13:17 rrnNDmUtFy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm9VHLDmpXAeCn.diag
[2025-07-22 13:17:48] -rw-r--r--. 1 boincer umatlas     22057 Jul 22 13:17 stderr.txt
[2025-07-22 13:17:48] HITS file was successfully produced:
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas 286570741 Jul 22 13:16 shared/HITS.pool.root.1
[2025-07-22 13:17:48]  *** Contents of shared directory: ***
[2025-07-22 13:17:48] total 605720
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas 332336787 Jul 22 12:01 ATLAS.root_0
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 12:01 start_atlas.sh
[2025-07-22 13:17:48] -rw-r--r--. 2 boincer umatlas    542898 Jul 22 12:01 input.tar.gz
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas 286570741 Jul 22 13:16 HITS.pool.root.1
[2025-07-22 13:17:48] -rw-------. 1 boincer umatlas    778240 Jul 22 13:17 result.tar.gz
13:17:49 (3074534): run_atlas exited; CPU time 33627.811536
13:17:49 (3074534): called boinc_finish(0)

</stderr_txt>
]]>

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