Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:38:52 (1994984): wrapper (7.7.26015): starting
10:38:52 (1994984): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 10:38:52] Arguments: --nthreads 12
[2025-07-22 10:38:52] Threads: 12
[2025-07-22 10:38:52] Checking for CVMFS
[2025-07-22 10:38:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:38:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:38:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:38:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:38:54] 2.13.0.0 1071838 11311 295136 148624 1 69 31094403 32935937 15973 16776704 0 38910226 99.526 47546053 8921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-22 10:38:54] CVMFS is ok
[2025-07-22 10:38:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:38:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:38:54] Further information can be found at the LHC@home message board.
[2025-07-22 10:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:38:54] Checking for apptainer binary...
[2025-07-22 10:38:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:38:54] Running /usr/bin/apptainer --version
[2025-07-22 10:38:54] apptainer version 1.4.1-1.el9
[2025-07-22 10:38:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:38:55] c-8-39.aglt2.org
[2025-07-22 10:38:55] apptainer works
[2025-07-22 10:38:55] Set ATHENA_PROC_NUMBER=12
[2025-07-22 10:38:55] Set ATHENA_CORE_NUMBER=12
[2025-07-22 10:38:55] Starting ATLAS job with PandaID=6741760309
[2025-07-22 10:38:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:49:13 (2218039): wrapper (7.7.26015): starting
11:49:13 (2218039): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 11:49:13] Arguments: --nthreads 12
[2025-07-22 11:49:13] Threads: 12
[2025-07-22 11:49:13] This job has been restarted, cleaning up previous attempt
[2025-07-22 11:49:13] Checking for CVMFS
[2025-07-22 11:49:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:49:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:49:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:49:15] 2.13.0.0 1071838 11381 296876 148626 2 246 32256832 32935936 16518 16776704 0 39227154 99.526 47973683 8977 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-22 11:49:15] CVMFS is ok
[2025-07-22 11:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:49:15] Further information can be found at the LHC@home message board.
[2025-07-22 11:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:49:15] Checking for apptainer binary...
[2025-07-22 11:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:49:15] Running /usr/bin/apptainer --version
[2025-07-22 11:49:15] apptainer version 1.4.1-1.el9
[2025-07-22 11:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:49:16] c-8-39.aglt2.org
[2025-07-22 11:49:16] apptainer works
[2025-07-22 11:49:16] Set ATHENA_PROC_NUMBER=12
[2025-07-22 11:49:16] Set ATHENA_CORE_NUMBER=12
[2025-07-22 11:49:16] Starting ATLAS job with PandaID=6741760309
[2025-07-22 11:49:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 20:38:37]  *** The last 200 lines of the pilot log: ***
[2025-07-22 20:38:37] 2025-07-23 00:38:01,447 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-22 20:38:37] 2025-07-23 00:38:03,480 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2725.8770625
[2025-07-22 20:38:37] 2025-07-23 00:38:03,490 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741760309/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,491 | INFO     | extracted standard info from prmon json
[2025-07-22 20:38:37] 2025-07-23 00:38:03,491 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 20:38:37] 2025-07-23 00:38:03,492 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 20:38:37] 2025-07-23 00:38:03,492 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 20:38:37] 2025-07-23 00:38:03,492 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 20:38:37] 2025-07-23 00:38:03,503 | INFO     | fitting pss+swap vs Time
[2025-07-22 20:38:37] 2025-07-23 00:38:03,504 | INFO     | sum of square deviations: 42848184489.89163
[2025-07-22 20:38:37] 2025-07-23 00:38:03,519 | INFO     | sum of deviations: 91058403892.29005
[2025-07-22 20:38:37] 2025-07-23 00:38:03,519 | INFO     | mean x: 1753215286.27853
[2025-07-22 20:38:37] 2025-07-23 00:38:03,519 | INFO     | mean y: 2356996.5396518377
[2025-07-22 20:38:37] 2025-07-23 00:38:03,520 | INFO     | -- intersect: -3723471473.1764774
[2025-07-22 20:38:37] 2025-07-23 00:38:03,520 | INFO     | intersect: -3723471473.1764774
[2025-07-22 20:38:37] 2025-07-23 00:38:03,521 | INFO     | chi2: 2.263470888601515
[2025-07-22 20:38:37] 2025-07-23 00:38:03,521 | INFO     | sum of square deviations: 41616986719.5
[2025-07-22 20:38:37] 2025-07-23 00:38:03,529 | INFO     | sum of deviations: 90556577650.5625
[2025-07-22 20:38:37] 2025-07-23 00:38:03,529 | INFO     | mean x: 1753215133.78125
[2025-07-22 20:38:37] 2025-07-23 00:38:03,530 | INFO     | mean y: 2356932.87109375
[2025-07-22 20:38:37] 2025-07-23 00:38:03,530 | INFO     | -- intersect: -3812555556.360432
[2025-07-22 20:38:37] 2025-07-23 00:38:03,530 | INFO     | intersect: -3812555556.360432
[2025-07-22 20:38:37] 2025-07-23 00:38:03,531 | INFO     | chi2: 2.261767920829537
[2025-07-22 20:38:37] 2025-07-23 00:38:03,531 | INFO     | current chi2=2.261767920829537 (change=0.07523700793122017 %)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,531 | INFO     | right removable region: 511
[2025-07-22 20:38:37] 2025-07-23 00:38:03,532 | INFO     | sum of square deviations: 41616898879.5
[2025-07-22 20:38:37] 2025-07-23 00:38:03,539 | INFO     | sum of deviations: -9372832189.0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,539 | INFO     | mean x: 1753215438.78125
[2025-07-22 20:38:37] 2025-07-23 00:38:03,539 | INFO     | mean y: 2369405.0625
[2025-07-22 20:38:37] 2025-07-23 00:38:03,539 | INFO     | -- intersect: 397223287.5307865
[2025-07-22 20:38:37] 2025-07-23 00:38:03,539 | INFO     | intersect: 397223287.5307865
[2025-07-22 20:38:37] 2025-07-23 00:38:03,540 | INFO     | chi2: 0.43075743924845633
[2025-07-22 20:38:37] 2025-07-23 00:38:03,541 | INFO     | current chi2=0.43075743924845633 (change=80.96916371146263 %)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,541 | INFO     | sum of square deviations: 40409427669.100746
[2025-07-22 20:38:37] 2025-07-23 00:38:03,549 | INFO     | sum of deviations: -33140488573.79884
[2025-07-22 20:38:37] 2025-07-23 00:38:03,549 | INFO     | mean x: 1753215591.2840238
[2025-07-22 20:38:37] 2025-07-23 00:38:03,550 | INFO     | mean y: 2372403.9013806707
[2025-07-22 20:38:37] 2025-07-23 00:38:03,550 | INFO     | -- intersect: 1440215615.7908292
[2025-07-22 20:38:37] 2025-07-23 00:38:03,550 | INFO     | intersect: 1440215615.7908292
[2025-07-22 20:38:37] 2025-07-23 00:38:03,551 | INFO     | chi2: 0.3332592653906817
[2025-07-22 20:38:37] 2025-07-23 00:38:03,551 | INFO     | current chi2=0.3332592653906817 (change=22.634124213357747 %)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,551 | INFO     | left removable region: 20
[2025-07-22 20:38:37] 2025-07-23 00:38:03,552 | INFO     | sum of square deviations: 36703102191.649765
[2025-07-22 20:38:37] 2025-07-23 00:38:03,559 | INFO     | sum of deviations: -8248309424.270866
[2025-07-22 20:38:37] 2025-07-23 00:38:03,559 | INFO     | mean x: 1753215713.2830958
[2025-07-22 20:38:37] 2025-07-23 00:38:03,559 | INFO     | mean y: 2369470.6782077393
[2025-07-22 20:38:37] 2025-07-23 00:38:03,559 | INFO     | -- intersect: 396370653.8790853
[2025-07-22 20:38:37] 2025-07-23 00:38:03,559 | INFO     | intersect: 396370653.8790853
[2025-07-22 20:38:37] 2025-07-23 00:38:03,560 | INFO     | chi2: 0.28045596913239434
[2025-07-22 20:38:37] 2025-07-23 00:38:03,560 | INFO     | -- intersect: 396370653.8790853
[2025-07-22 20:38:37] 2025-07-23 00:38:03,560 | INFO     | current memory leak: -0.22 B/s (using 491 data points, chi2=0.28)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,561 | INFO     | could have reported an average CPU frequency of 2730 MHz (21 samples)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,561 | INFO     | ..............................
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . Timing measurements:
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . get job = 0 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . initial setup = 3 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . payload setup = 42 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . stage-in = 0 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . payload execution = 31549 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . stage-out = 3 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,562 | INFO     | . log creation = 0 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,563 | INFO     | ..............................
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | 
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | job summary report
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | --------------------------------------------------
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | PanDA job id: 6741760309
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | task id: 45697472
[2025-07-22 20:38:37] 2025-07-23 00:38:03,883 | INFO     | errors: (none)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | pilot state: finished 
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | transexitcode: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | exeerrorcode: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | exeerrordiag: 
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | exitcode: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | exitmsg: OK
[2025-07-22 20:38:37] 2025-07-23 00:38:03,884 | INFO     | cpuconsumptiontime: 73168 s
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | nevents: 400
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | neventsw: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | pid: 2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | pgrp: 2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | corecount: 12
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | event service: False
[2025-07-22 20:38:37] 2025-07-23 00:38:03,885 | INFO     | sizes: {0: 2397359, 1: 2397530, 2: 2397586, 13: 2397586, 24: 2397642, 30: 2397932, 35: 2398088, 31594: 2436001, 31595: 2436000, 31600: 2445110, 31607: 2445248}
[2025-07-22 20:38:37] 2025-07-23 00:38:03,886 | INFO     | --------------------------------------------------
[2025-07-22 20:38:37] 2025-07-23 00:38:03,886 | INFO     | 
[2025-07-22 20:38:37] 2025-07-23 00:38:03,886 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,907 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 20:38:37] 2025-07-23 00:38:03,909 | INFO     | job 6741760309 has completed (purged errors)
[2025-07-22 20:38:37] 2025-07-23 00:38:03,910 | INFO     | overall cleanup function is called
[2025-07-22 20:38:37] 2025-07-23 00:38:04,919 | INFO     | --- collectZombieJob: --- 10, [2232372]
[2025-07-22 20:38:37] 2025-07-23 00:38:04,919 | INFO     | zombie collector waiting for pid 2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:04,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 20:38:37] 2025-07-23 00:38:04,919 | INFO     | collected zombie processes
[2025-07-22 20:38:37] 2025-07-23 00:38:04,919 | INFO     | will attempt to kill all subprocesses of pid=2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:05,451 | INFO     | process IDs to be killed: [2232372] (in reverse order)
[2025-07-22 20:38:37] 2025-07-23 00:38:05,580 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 20:38:37] 2025-07-23 00:38:05,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 20:38:37] 2025-07-23 00:38:05,596 | INFO     | did not find any defunct processes belonging to 2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:05,611 | INFO     | did not find any defunct processes belonging to 2232372
[2025-07-22 20:38:37] 2025-07-23 00:38:05,611 | INFO     | ready for new job
[2025-07-22 20:38:37] 2025-07-23 00:38:05,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 20:38:37] 2025-07-23 00:38:05,613 | INFO     | ***************************************
[2025-07-22 20:38:37] 2025-07-23 00:38:05,614 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 20:38:37] 2025-07-23 00:38:05,614 | INFO     | ***************************************
[2025-07-22 20:38:37] 2025-07-23 00:38:05,614 | INFO     | 
[2025-07-22 20:38:37] 2025-07-23 00:38:05,628 | INFO     | architecture information:
[2025-07-22 20:38:37] 2025-07-23 00:38:05,629 | INFO     | executing command: cat /etc/os-release
[2025-07-22 20:38:37] 2025-07-23 00:38:05,640 | INFO     | cat /etc/os-release:
[2025-07-22 20:38:37] NAME="CentOS Linux"
[2025-07-22 20:38:37] VERSION="7 (Core)"
[2025-07-22 20:38:37] ID="centos"
[2025-07-22 20:38:37] ID_LIKE="rhel fedora"
[2025-07-22 20:38:37] VERSION_ID="7"
[2025-07-22 20:38:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 20:38:37] ANSI_COLOR="0;31"
[2025-07-22 20:38:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 20:38:37] HOME_URL="https://www.centos.org/"
[2025-07-22 20:38:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 20:38:37] 
[2025-07-22 20:38:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 20:38:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 20:38:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 20:38:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 20:38:37] 
[2025-07-22 20:38:37] 2025-07-23 00:38:05,640 | INFO     | ***************************************
[2025-07-22 20:38:37] 2025-07-23 00:38:06,143 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-22 20:38:37] 2025-07-23 00:38:06,158 | INFO     | sufficient remaining disk space (76195823616 B)
[2025-07-22 20:38:37] 2025-07-23 00:38:06,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 20:38:37] 2025-07-23 00:38:06,159 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 20:38:37] 2025-07-23 00:38:06,159 | INFO     | update_server=False
[2025-07-22 20:38:37] 2025-07-23 00:38:06,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 20:38:37] 2025-07-23 00:38:06,459 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-22 20:38:37] 2025-07-23 00:38:06,460 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-22 20:38:37] 2025-07-23 00:38:06,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:38:37] 2025-07-23 00:38:06,470 | INFO     | will abort loop
[2025-07-22 20:38:37] 2025-07-23 00:38:06,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 20:38:37] 2025-07-23 00:38:06,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 20:38:37] 2025-07-23 00:38:06,761 | INFO     | all job control threads have been joined
[2025-07-22 20:38:37] 2025-07-23 00:38:07,162 | INFO     | all data control threads have been joined
[2025-07-22 20:38:37] 2025-07-23 00:38:07,165 | INFO     | [job] retrieve thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:07,377 | INFO     | [job] validate thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:07,398 | INFO     | [data] copytool_in thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:07,475 | INFO     | [job] job monitor thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:07,475 | INFO     | all payload control threads have been joined
[2025-07-22 20:38:37] 2025-07-23 00:38:07,766 | INFO     | [job] control thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,168 | INFO     | [data] control thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,182 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,343 | INFO     | [payload] validate_post thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,378 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,415 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,480 | INFO     | [payload] control thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,490 | INFO     | [data] copytool_out thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:08,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:38:37] 2025-07-23 00:38:08,758 | INFO     | [payload] failed_post thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:09,671 | INFO     | [job] queue monitor thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:10,534 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:16,718 | INFO     | job.realtimelogging is not enabled
[2025-07-22 20:38:37] 2025-07-23 00:38:17,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 20:38:37] 2025-07-23 00:38:19,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852922050368)>', '<ExcThread(monitor, started 139851919783680)>']
[2025-07-22 20:38:37] 2025-07-23 00:38:24,074 | INFO     | all workflow threads have been joined
[2025-07-22 20:38:37] 2025-07-23 00:38:24,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 20:38:37] 2025-07-23 00:38:24,074 | INFO     | traces error code: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:24,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 20:38:37] 2025-07-23 00:38:37,410 | INFO     | PID=2222519 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | INFO     | .. there are 39 such processes running
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 20:38:37] 2025-07-23 00:38:37,411 | INFO     | [monitor] control thread has ended
[2025-07-22 20:38:37] 2025-07-23 00:38:37,553 [wrapper] ==== pilot stdout END ====
[2025-07-22 20:38:37] 2025-07-23 00:38:37,556 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 20:38:37] 2025-07-23 00:38:37,558 [wrapper] pilotpid: 2222519
[2025-07-22 20:38:37] 2025-07-23 00:38:37,560 [wrapper] Pilot exit status: 0
[2025-07-22 20:38:37] 2025-07-23 00:38:37,576 [wrapper] pandaids: 6741760309 6741760309
[2025-07-22 20:38:37] 2025-07-23 00:38:37,657 [wrapper] cleanup supervisor_pilot 3697793 2222520
[2025-07-22 20:38:37] 2025-07-23 00:38:37,659 [wrapper] Test setup, not cleaning
[2025-07-22 20:38:37] 2025-07-23 00:38:37,662 [wrapper] apfmon messages muted
[2025-07-22 20:38:37] 2025-07-23 00:38:37,665 [wrapper] ==== wrapper stdout END ====
[2025-07-22 20:38:37] 2025-07-23 00:38:37,667 [wrapper] ==== wrapper stderr END ====
[2025-07-22 20:38:37]  *** Error codes and diagnostics ***
[2025-07-22 20:38:37]     "exeErrorCode": 0,
[2025-07-22 20:38:37]     "exeErrorDiag": "",
[2025-07-22 20:38:37]     "pilotErrorCode": 0,
[2025-07-22 20:38:37]     "pilotErrorDiag": "",
[2025-07-22 20:38:37]  *** Listing of results directory ***
[2025-07-22 20:38:37] total 921380
[2025-07-22 20:38:37] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas    530466 Jul 22 03:56 pilot3.tar.gz
[2025-07-22 20:38:37] -rwx------. 1 boincer umatlas     36292 Jul 22 04:11 runpilot2-wrapper.sh
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas      5112 Jul 22 04:11 queuedata.json
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas       100 Jul 22 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 20:38:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 10:38 run_atlas
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas       105 Jul 22 10:38 job.xml
[2025-07-22 20:38:37] -rw-r--r--. 3 boincer umatlas 326754893 Jul 22 10:38 EVNT.45697470._000050.pool.root.1
[2025-07-22 20:38:37] -rw-r--r--. 3 boincer umatlas 326754893 Jul 22 10:38 ATLAS.root_0
[2025-07-22 20:38:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 10:38 start_atlas.sh
[2025-07-22 20:38:37] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 10:38 shared
[2025-07-22 20:38:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 22 10:38 input.tar.gz
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas         0 Jul 22 10:38 boinc_lockfile
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas      2610 Jul 22 11:49 pandaJob.out
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas    977704 Jul 22 11:50 agis_schedconf.cvmfs.json
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas 280566057 Jul 22 20:37 HITS.45697472._001228.pool.root.1
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas       532 Jul 22 20:37 boinc_task_state.xml
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas      1043 Jul 22 20:37 memory_monitor_summary.json
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas        96 Jul 22 20:37 pilot_heartbeat.json
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas   1593031 Jul 22 20:37 agis_ddmendpoints.agis.ALL.json
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas    569868 Jul 22 20:37 log.45697472._001228.job.log.tgz.1
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas      7817 Jul 22 20:38 heartbeat.json
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas      6613 Jul 22 20:38 init_data.xml
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 20:38 boinc_mmap_file
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas        28 Jul 22 20:38 wrapper_checkpoint.txt
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas       823 Jul 22 20:38 pilotlog.txt
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas   2198599 Jul 22 20:38 log.45697472._001228.job.log.1
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas       357 Jul 22 20:38 output.list
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas       620 Jul 22 20:38 runtime_log
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas   2785280 Jul 22 20:38 result.tar.gz
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas      8738 Jul 22 20:38 runtime_log.err
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas       782 Jul 22 20:38 0CRNDmXHNy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJtILDmqqetVm.diag
[2025-07-22 20:38:37] -rw-r--r--. 1 boincer umatlas     23381 Jul 22 20:38 stderr.txt
[2025-07-22 20:38:37] HITS file was successfully produced:
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas 280566057 Jul 22 20:37 shared/HITS.pool.root.1
[2025-07-22 20:38:37]  *** Contents of shared directory: ***
[2025-07-22 20:38:37] total 596368
[2025-07-22 20:38:37] -rw-r--r--. 3 boincer umatlas 326754893 Jul 22 10:38 ATLAS.root_0
[2025-07-22 20:38:37] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 10:38 start_atlas.sh
[2025-07-22 20:38:37] -rw-r--r--. 2 boincer umatlas    542892 Jul 22 10:38 input.tar.gz
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas 280566057 Jul 22 20:37 HITS.pool.root.1
[2025-07-22 20:38:37] -rw-------. 1 boincer umatlas   2785280 Jul 22 20:38 result.tar.gz
20:38:39 (2218039): run_atlas exited; CPU time 74665.877229
20:38:39 (2218039): called boinc_finish(0)

</stderr_txt>
]]>

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