Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:23:32 (2695067): wrapper (7.7.26015): starting
10:23:32 (2695067): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 10:23:32] Arguments: --nthreads 8
[2025-07-22 10:23:32] Threads: 8
[2025-07-22 10:23:32] Checking for CVMFS
[2025-07-22 10:23:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:23:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:23:32] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:23:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:23:33] 2.13.1.0 665382 1086 76912 148624 1 82 32690188 40960000 12029 16776704 0 15911481 99.999 40454 55875 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 10:23:33] CVMFS is ok
[2025-07-22 10:23:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:23:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:23:33] Further information can be found at the LHC@home message board.
[2025-07-22 10:23:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:23:33] Checking for apptainer binary...
[2025-07-22 10:23:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:23:33] Running /usr/bin/apptainer --version
[2025-07-22 10:23:33] apptainer version 1.4.1-1.el9
[2025-07-22 10:23:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:23:33] c-208-40.aglt2.org
[2025-07-22 10:23:33] apptainer works
[2025-07-22 10:23:33] Set ATHENA_PROC_NUMBER=8
[2025-07-22 10:23:33] Set ATHENA_CORE_NUMBER=8
[2025-07-22 10:23:33] Starting ATLAS job with PandaID=6741709670
[2025-07-22 10:23:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:35:21]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:35:21]  storage_token=
[2025-07-22 11:35:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6741709670/log.45697453._001374.job.log.tgz.1
[2025-07-22 11:35:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/cf/log.45697453._001374.job.log.tgz.1
[2025-07-22 11:35:21]  workdir=None
[2025-07-22 11:35:21] ]
[2025-07-22 11:35:21] 2025-07-22 15:34:39,029 | INFO     | transferring file log.45697453._001374.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6741709670/log.45697453._001374.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-22 11:35:21] 2025-07-22 15:34:39,029 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6741709670/log.45697453._001374.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697453._001374.job
[2025-07-22 11:35:21] 2025-07-22 15:34:39,047 | INFO     | adding to output.list: log.45697453._001374.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/cf/log.45697453._001374.job.log.tg
[2025-07-22 11:35:21] 2025-07-22 15:34:39,047 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 11:35:21] 2025-07-22 15:34:39,047 | INFO     | summary of transferred files:
[2025-07-22 11:35:21] 2025-07-22 15:34:39,047 | INFO     |  -- lfn=log.45697453._001374.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 11:35:21] 2025-07-22 15:34:39,047 | INFO     | stage-out finished correctly
[2025-07-22 11:35:21] 2025-07-22 15:34:40,549 | WARNING  | process 2711562 can no longer be monitored (due to stat problems) - aborting
[2025-07-22 11:35:21] 2025-07-22 15:34:40,549 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741709670/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 11:35:21] 2025-07-22 15:34:40,896 | INFO     | number of running child processes to parent process 2711562: 1
[2025-07-22 11:35:21] 2025-07-22 15:34:40,896 | INFO     | maximum number of monitored processes: 6
[2025-07-22 11:35:21] 2025-07-22 15:34:42,424 | INFO     | PID=2699507 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-22 11:35:21] 2025-07-22 15:34:42,424 | INFO     | .. there are 16 such processes running
[2025-07-22 11:35:21] 2025-07-22 15:34:42,570 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 11:35:21] 2025-07-22 15:34:43,399 | INFO     | monitor loop #307: job 0:6741709670 is in state 'finished'
[2025-07-22 11:35:21] 2025-07-22 15:34:43,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 11:35:21] 2025-07-22 15:34:44,987 | INFO     | job 6741709670 has state=finished
[2025-07-22 11:35:21] 2025-07-22 15:34:44,988 | INFO     | preparing for final server update for job 6741709670 in state='finished'
[2025-07-22 11:35:21] 2025-07-22 15:34:44,988 | INFO     | this job has now completed (state=finished)
[2025-07-22 11:35:21] 2025-07-22 15:34:44,989 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:35:21] 2025-07-22 15:34:44,989 | INFO     | log transfer has been attempted: DONE
[2025-07-22 11:35:21] 2025-07-22 15:34:44,989 | INFO     | job 6741709670 has finished - writing final server update
[2025-07-22 11:35:21] 2025-07-22 15:34:44,989 | INFO     | total number of processed events: 400 (read)
[2025-07-22 11:35:21] 2025-07-22 15:34:44,989 | INFO     | executing command: lscpu
[2025-07-22 11:35:21] 2025-07-22 15:34:45,048 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 11:35:21] 2025-07-22 15:34:45,902 | INFO     | monitor loop #308: job 0:6741709670 is in state 'finished'
[2025-07-22 11:35:21] 2025-07-22 15:34:45,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,405 | INFO     | monitor loop #309: job 0:6741709670 is in state 'finished'
[2025-07-22 11:35:21] 2025-07-22 15:34:48,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,687 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 11:35:21] 2025-07-22 15:34:48,692 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3769.8754453125016
[2025-07-22 11:35:21] 2025-07-22 15:34:48,705 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741709670/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,706 | INFO     | extracted standard info from prmon json
[2025-07-22 11:35:21] 2025-07-22 15:34:48,706 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 11:35:21] 2025-07-22 15:34:48,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 11:35:21] 2025-07-22 15:34:48,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 11:35:21] 2025-07-22 15:34:48,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | fitting pss+swap vs Time
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | sum of square deviations: 77515872.0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | sum of deviations: -249158099.0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | mean x: 1753196442.0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | mean y: 2581082.285714286
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | -- intersect: 5637853980.490146
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | intersect: 5637853980.490146
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | chi2: 0.001653338118343768
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | -- intersect: 5637853980.490146
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | current memory leak: -3.21 B/s (using 63 data points, chi2=0.00)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,708 | INFO     | could have reported an average CPU frequency of 3767 MHz (6 samples)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | ..............................
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . Timing measurements:
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . get job = 0 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . initial setup = 2 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . payload setup = 5 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . stage-in = 0 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . payload execution = 4232 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . stage-out = 0 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | . log creation = 0 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,709 | INFO     | ..............................
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | 
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | job summary report
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | --------------------------------------------------
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | PanDA job id: 6741709670
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | task id: 45697453
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | errors: (none)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | pilot state: finished 
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | transexitcode: 0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | exeerrorcode: 0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | exeerrordiag: 
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | exitcode: 0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | exitmsg: OK
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | cpuconsumptiontime: 30645 s
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | nevents: 400
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | neventsw: 0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | pid: 2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:48,769 | INFO     | pgrp: 2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | corecount: 8
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | event service: False
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | sizes: {0: 2396722, 1: 2397578, 4: 2397840, 11: 2397868, 4241: 2424039, 4242: 2433220, 4246: 2433220, 4252: 2433414}
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | --------------------------------------------------
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | 
[2025-07-22 11:35:21] 2025-07-22 15:34:48,770 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-22 11:35:21] 2025-07-22 15:34:48,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 11:35:21] 2025-07-22 15:34:48,789 | INFO     | job 6741709670 has completed (purged errors)
[2025-07-22 11:35:21] 2025-07-22 15:34:48,790 | INFO     | overall cleanup function is called
[2025-07-22 11:35:21] 2025-07-22 15:34:49,798 | INFO     | --- collectZombieJob: --- 10, [2711562]
[2025-07-22 11:35:21] 2025-07-22 15:34:49,798 | INFO     | zombie collector waiting for pid 2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:49,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 11:35:21] 2025-07-22 15:34:49,798 | INFO     | collected zombie processes
[2025-07-22 11:35:21] 2025-07-22 15:34:49,798 | INFO     | will attempt to kill all subprocesses of pid=2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:50,149 | INFO     | process IDs to be killed: [2711562] (in reverse order)
[2025-07-22 11:35:21] 2025-07-22 15:34:50,270 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 11:35:21] 2025-07-22 15:34:50,270 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 11:35:21] 2025-07-22 15:34:50,287 | INFO     | did not find any defunct processes belonging to 2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:50,302 | INFO     | did not find any defunct processes belonging to 2711562
[2025-07-22 11:35:21] 2025-07-22 15:34:50,302 | INFO     | ready for new job
[2025-07-22 11:35:21] 2025-07-22 15:34:50,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 11:35:21] 2025-07-22 15:34:50,304 | INFO     | ***************************************
[2025-07-22 11:35:21] 2025-07-22 15:34:50,304 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 11:35:21] 2025-07-22 15:34:50,304 | INFO     | ***************************************
[2025-07-22 11:35:21] 2025-07-22 15:34:50,304 | INFO     | 
[2025-07-22 11:35:21] 2025-07-22 15:34:50,309 | INFO     | architecture information:
[2025-07-22 11:35:21] 2025-07-22 15:34:50,309 | INFO     | executing command: cat /etc/os-release
[2025-07-22 11:35:21] 2025-07-22 15:34:50,322 | INFO     | cat /etc/os-release:
[2025-07-22 11:35:21] NAME="CentOS Linux"
[2025-07-22 11:35:21] VERSION="7 (Core)"
[2025-07-22 11:35:21] ID="centos"
[2025-07-22 11:35:21] ID_LIKE="rhel fedora"
[2025-07-22 11:35:21] VERSION_ID="7"
[2025-07-22 11:35:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 11:35:21] ANSI_COLOR="0;31"
[2025-07-22 11:35:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 11:35:21] HOME_URL="https://www.centos.org/"
[2025-07-22 11:35:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 11:35:21] 
[2025-07-22 11:35:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 11:35:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 11:35:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 11:35:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 11:35:21] 
[2025-07-22 11:35:21] 2025-07-22 15:34:50,323 | INFO     | ***************************************
[2025-07-22 11:35:21] 2025-07-22 15:34:50,825 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-22 11:35:21] 2025-07-22 15:34:50,843 | INFO     | sufficient remaining disk space (160010600448 B)
[2025-07-22 11:35:21] 2025-07-22 15:34:50,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 11:35:21] 2025-07-22 15:34:50,844 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 11:35:21] 2025-07-22 15:34:50,844 | INFO     | update_server=False
[2025-07-22 11:35:21] 2025-07-22 15:34:50,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 11:35:21] 2025-07-22 15:34:50,908 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-22 11:35:21] 2025-07-22 15:34:50,908 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-22 11:35:21] 2025-07-22 15:34:50,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:35:21] 2025-07-22 15:34:50,908 | INFO     | will abort loop
[2025-07-22 11:35:21] 2025-07-22 15:34:51,074 | INFO     | all job control threads have been joined
[2025-07-22 11:35:21] 2025-07-22 15:34:51,157 | INFO     | all data control threads have been joined
[2025-07-22 11:35:21] 2025-07-22 15:34:51,849 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:51,909 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,079 | INFO     | [job] control thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 11:35:21] 2025-07-22 15:34:52,151 | INFO     | all payload control threads have been joined
[2025-07-22 11:35:21] 2025-07-22 15:34:52,162 | INFO     | [data] control thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,204 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,310 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,326 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,427 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:52,931 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:53,043 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:53,136 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:35:21] 2025-07-22 15:34:53,157 | INFO     | [payload] control thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:53,314 | INFO     | [job] validate thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:53,779 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:35:21] 2025-07-22 15:34:54,131 | INFO     | [data] copytool_out thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:54,784 | INFO     | [job] queue monitor thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:34:57,142 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:35:01,568 | INFO     | job.realtimelogging is not enabled
[2025-07-22 11:35:21] 2025-07-22 15:35:02,573 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:35:21] 2025-07-22 15:35:03,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113035745088)>', '<ExcThread(monitor, started 140112528647936)>']
[2025-07-22 11:35:21] 2025-07-22 15:35:08,352 | INFO     | all workflow threads have been joined
[2025-07-22 11:35:21] 2025-07-22 15:35:08,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:35:21] 2025-07-22 15:35:08,352 | INFO     | traces error code: 0
[2025-07-22 11:35:21] 2025-07-22 15:35:08,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:35:21] 2025-07-22 15:35:20,943 | INFO     | PID=2699507 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 11:35:21] 2025-07-22 15:35:20,943 | INFO     | .. there are 16 such processes running
[2025-07-22 11:35:21] 2025-07-22 15:35:20,944 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 11:35:21] 2025-07-22 15:35:20,944 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:35:21] 2025-07-22 15:35:20,944 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:35:21] 2025-07-22 15:35:20,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:35:21] 2025-07-22 15:35:20,944 | INFO     | [monitor] control thread has ended
[2025-07-22 11:35:21] 2025-07-22 15:35:21,061 [wrapper] ==== pilot stdout END ====
[2025-07-22 11:35:21] 2025-07-22 15:35:21,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 11:35:21] 2025-07-22 15:35:21,072 [wrapper] pilotpid: 2699507
[2025-07-22 11:35:21] 2025-07-22 15:35:21,076 [wrapper] Pilot exit status: 0
[2025-07-22 11:35:21] 2025-07-22 15:35:21,087 [wrapper] pandaids: 6741709670
[2025-07-22 11:35:21] 2025-07-22 15:35:21,171 [wrapper] cleanup supervisor_pilot 3031969 2699508
[2025-07-22 11:35:21] 2025-07-22 15:35:21,175 [wrapper] Test setup, not cleaning
[2025-07-22 11:35:21] 2025-07-22 15:35:21,178 [wrapper] apfmon messages muted
[2025-07-22 11:35:21] 2025-07-22 15:35:21,181 [wrapper] ==== wrapper stdout END ====
[2025-07-22 11:35:21] 2025-07-22 15:35:21,183 [wrapper] ==== wrapper stderr END ====
[2025-07-22 11:35:21]  *** Error codes and diagnostics ***
[2025-07-22 11:35:21]     "exeErrorCode": 0,
[2025-07-22 11:35:21]     "exeErrorDiag": "",
[2025-07-22 11:35:21]     "pilotErrorCode": 0,
[2025-07-22 11:35:21]     "pilotErrorDiag": "",
[2025-07-22 11:35:21]  *** Listing of results directory ***
[2025-07-22 11:35:21] total 567784
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-22 11:35:21] -rwx------. 1 boincer umatlas     36292 Jul 21 20:34 runpilot2-wrapper.sh
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 21 20:34 queuedata.json
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas       100 Jul 22 10:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:35:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 10:23 run_atlas
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas       105 Jul 22 10:23 job.xml
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas 317990034 Jul 22 10:23 EVNT.45697451._000055.pool.root.1
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 10:23 start_atlas.sh
[2025-07-22 11:35:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 10:23 shared
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas    564569 Jul 22 10:23 input.tar.gz
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas         0 Jul 22 10:23 boinc_lockfile
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas      2633 Jul 22 10:23 pandaJob.out
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas    977712 Jul 22 10:23 agis_schedconf.cvmfs.json
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas   1593031 Jul 22 10:23 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:35:21] drwx------. 6 boincer umatlas      4096 Jul 22 10:23 pilot3
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas      7171 Jul 22 11:29 init_data.xml
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas 258026396 Jul 22 11:34 HITS.45697453._001374.pool.root.1
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas       529 Jul 22 11:34 boinc_task_state.xml
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas      1030 Jul 22 11:34 memory_monitor_summary.json
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas    314537 Jul 22 11:34 log.45697453._001374.job.log.tgz.1
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas      7765 Jul 22 11:34 heartbeat.json
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas        27 Jul 22 11:35 wrapper_checkpoint.txt
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 11:35 boinc_mmap_file
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas        95 Jul 22 11:35 pilot_heartbeat.json
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas       823 Jul 22 11:35 pilotlog.txt
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas    427174 Jul 22 11:35 log.45697453._001374.job.log.1
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas       357 Jul 22 11:35 output.list
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas       620 Jul 22 11:35 runtime_log
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas    757760 Jul 22 11:35 result.tar.gz
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas       651 Jul 22 11:35 WylNDmS8Fy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmK0tKDmVcarFo.diag
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas      8660 Jul 22 11:35 runtime_log.err
[2025-07-22 11:35:21] -rw-r--r--. 1 boincer umatlas     22294 Jul 22 11:35 stderr.txt
[2025-07-22 11:35:21] HITS file was successfully produced:
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas 258026396 Jul 22 11:34 shared/HITS.pool.root.1
[2025-07-22 11:35:21]  *** Contents of shared directory: ***
[2025-07-22 11:35:21] total 563836
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas 317990034 Jul 22 10:23 ATLAS.root_0
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 10:23 start_atlas.sh
[2025-07-22 11:35:21] -rw-r--r--. 2 boincer umatlas    564569 Jul 22 10:23 input.tar.gz
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas 258026396 Jul 22 11:34 HITS.pool.root.1
[2025-07-22 11:35:21] -rw-------. 1 boincer umatlas    757760 Jul 22 11:35 result.tar.gz
11:35:23 (2695067): run_atlas exited; CPU time 30750.971236
11:35:23 (2695067): called boinc_finish(0)

</stderr_txt>
]]>

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