Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:25:47 (1014064): wrapper (7.7.26015): starting
23:25:47 (1014064): wrapper: running run_atlas (--nthreads 6)
[2025-07-22 23:25:47] Arguments: --nthreads 6
[2025-07-22 23:25:47] Threads: 6
[2025-07-22 23:25:47] Checking for CVMFS
[2025-07-22 23:25:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 23:25:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 23:25:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 23:25:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 23:25:48] 2.11.5.0 536057 650 63052 148624 2 57 50291188 52428800 1858 130560 0 1314528 99.996 25477 16 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-22 23:25:48] CVMFS is ok
[2025-07-22 23:25:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 23:25:48] Checking for apptainer binary...
[2025-07-22 23:25:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 23:25:48] Running /usr/bin/apptainer --version
[2025-07-22 23:25:48] apptainer version 1.3.5-1.el9
[2025-07-22 23:25:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 23:25:48] testio008
[2025-07-22 23:25:48] apptainer works
[2025-07-22 23:25:48] Set ATHENA_PROC_NUMBER=6
[2025-07-22 23:25:48] Set ATHENA_CORE_NUMBER=6
[2025-07-22 23:25:48] Starting ATLAS job with PandaID=6741741397
[2025-07-22 23:25:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-23 01:01:25]  *** The last 200 lines of the pilot log: ***
[2025-07-23 01:01:25]  mtime=0
[2025-07-23 01:01:25]  protocol_id=None
[2025-07-23 01:01:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-23 01:01:25]  replicas=None
[2025-07-23 01:01:25]  scope=mc23_13p6TeV
[2025-07-23 01:01:25]  status=None
[2025-07-23 01:01:25]  status_code=0
[2025-07-23 01:01:25]  storage_token=
[2025-07-23 01:01:25]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6741741397/log.45697453._005474.job.log.tgz.1
[2025-07-23 01:01:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/f2/log.45697453._005474.job.log.tgz.1
[2025-07-23 01:01:25]  workdir=None
[2025-07-23 01:01:25] ]
[2025-07-23 01:01:25] 2025-07-22 16:00:50,686 | INFO     | transferring file log.45697453._005474.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6741741397/log.45697453._005474.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-23 01:01:25] 2025-07-22 16:00:50,686 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6741741397/log.45697453._005474.job.log.tgz.1 /var/lib/boinc/slots/1/log.45697453._005474.job
[2025-07-23 01:01:25] 2025-07-22 16:00:50,694 | INFO     | adding to output.list: log.45697453._005474.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/f2/log.45697453._005474.job.log.tg
[2025-07-23 01:01:25] 2025-07-22 16:00:50,694 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-23 01:01:25] 2025-07-22 16:00:50,694 | INFO     | summary of transferred files:
[2025-07-23 01:01:25] 2025-07-22 16:00:50,695 | INFO     |  -- lfn=log.45697453._005474.job.log.tgz.1, status_code=0, status=transferred
[2025-07-23 01:01:25] 2025-07-22 16:00:50,695 | INFO     | stage-out finished correctly
[2025-07-23 01:01:25] 2025-07-22 16:00:50,733 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | job 6741741397 has state=finished
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | preparing for final server update for job 6741741397 in state='finished'
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | this job has now completed (state=finished)
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | log transfer has been attempted: DONE
[2025-07-23 01:01:25] 2025-07-22 16:00:50,776 | INFO     | job 6741741397 has finished - writing final server update
[2025-07-23 01:01:25] 2025-07-22 16:00:50,777 | INFO     | total number of processed events: 400 (read)
[2025-07-23 01:01:25] 2025-07-22 16:00:50,777 | INFO     | executing command: lscpu
[2025-07-23 01:01:25] 2025-07-22 16:00:50,787 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-23 01:01:25] 2025-07-22 16:00:50,873 | INFO     | PID=1017768 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 01:01:25] 2025-07-22 16:00:50,873 | INFO     | .. there are 3 such processes running
[2025-07-23 01:01:25] 2025-07-22 16:00:52,115 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-23 01:01:25] 2025-07-22 16:00:52,116 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4120.035099999999
[2025-07-23 01:01:25] 2025-07-22 16:00:52,118 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6741741397/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,118 | INFO     | extracted standard info from prmon json
[2025-07-23 01:01:25] 2025-07-22 16:00:52,118 | INFO     | extracted standard memory fields from prmon json
[2025-07-23 01:01:25] 2025-07-22 16:00:52,119 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-23 01:01:25] 2025-07-22 16:00:52,119 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-23 01:01:25] 2025-07-22 16:00:52,119 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | fitting pss+swap vs Time
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | sum of square deviations: 197203697.5
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | sum of deviations: -662651662.000001
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | mean x: 1753197272.5
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | mean y: 2584130.2558139535
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | -- intersect: 5893746928.742355
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | intersect: 5893746928.742355
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | chi2: 1.5842822659147038
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | -- intersect: 5893746928.742355
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | current memory leak: -3.36 B/s (using 86 data points, chi2=1.58)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,120 | INFO     | could have reported an average CPU frequency of 3493 MHz (7 samples)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | ..............................
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . Timing measurements:
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . get job = 0 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . initial setup = 5 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . payload setup = 2 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . stage-in = 0 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . payload execution = 5672 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . stage-out = 0 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | . log creation = 0 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,121 | INFO     | ..............................
[2025-07-23 01:01:25] 2025-07-22 16:00:52,468 | INFO     | 
[2025-07-23 01:01:25] 2025-07-22 16:00:52,468 | INFO     | job summary report
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | --------------------------------------------------
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | PanDA job id: 6741741397
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | task id: 45697453
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | errors: (none)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | pilot state: finished 
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | transexitcode: 0
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | exeerrorcode: 0
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | exeerrordiag: 
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | exitcode: 0
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | exitmsg: OK
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | cpuconsumptiontime: 29189 s
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | nevents: 400
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | neventsw: 0
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | pid: 1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | pgrp: 1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | corecount: 6
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | event service: False
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | sizes: {0: 2397501, 2: 2397763, 11: 2397791, 5678: 2424499, 5680: 2433553, 5681: 2433691}
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | --------------------------------------------------
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | 
[2025-07-23 01:01:25] 2025-07-22 16:00:52,469 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,478 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-23 01:01:25] 2025-07-22 16:00:52,478 | INFO     | job 6741741397 has completed (purged errors)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,478 | INFO     | overall cleanup function is called
[2025-07-23 01:01:25] 2025-07-22 16:00:52,655 | WARNING  | process 1024312 can no longer be monitored (due to stat problems) - aborting
[2025-07-23 01:01:25] 2025-07-22 16:00:52,683 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-07-23 01:01:25] 2025-07-22 16:00:52,718 | INFO     | number of running child processes to parent process 1024312: 1
[2025-07-23 01:01:25] 2025-07-22 16:00:52,718 | INFO     | maximum number of monitored processes: 6
[2025-07-23 01:01:25] 2025-07-22 16:00:52,718 | INFO     | aborting job monitoring since job object (job id=6741741397) has expired
[2025-07-23 01:01:25] 2025-07-22 16:00:53,483 | INFO     | --- collectZombieJob: --- 10, [1024312]
[2025-07-23 01:01:25] 2025-07-22 16:00:53,484 | INFO     | zombie collector waiting for pid 1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:53,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-23 01:01:25] 2025-07-22 16:00:53,484 | INFO     | collected zombie processes
[2025-07-23 01:01:25] 2025-07-22 16:00:53,484 | INFO     | will attempt to kill all subprocesses of pid=1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:53,521 | INFO     | process IDs to be killed: [1024312] (in reverse order)
[2025-07-23 01:01:25] 2025-07-22 16:00:53,544 | WARNING  | found no corresponding commands to process id(s)
[2025-07-23 01:01:25] 2025-07-22 16:00:53,544 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-23 01:01:25] 2025-07-22 16:00:53,546 | INFO     | did not find any defunct processes belonging to 1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:53,548 | INFO     | did not find any defunct processes belonging to 1024312
[2025-07-23 01:01:25] 2025-07-22 16:00:53,548 | INFO     | ready for new job
[2025-07-23 01:01:25] 2025-07-22 16:00:53,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | ***************************************
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | ***************************************
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | 
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | architecture information:
[2025-07-23 01:01:25] 2025-07-22 16:00:53,549 | INFO     | executing command: cat /etc/os-release
[2025-07-23 01:01:25] 2025-07-22 16:00:53,557 | INFO     | cat /etc/os-release:
[2025-07-23 01:01:25] NAME="CentOS Linux"
[2025-07-23 01:01:25] VERSION="7 (Core)"
[2025-07-23 01:01:25] ID="centos"
[2025-07-23 01:01:25] ID_LIKE="rhel fedora"
[2025-07-23 01:01:25] VERSION_ID="7"
[2025-07-23 01:01:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-23 01:01:25] ANSI_COLOR="0;31"
[2025-07-23 01:01:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-23 01:01:25] HOME_URL="https://www.centos.org/"
[2025-07-23 01:01:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-23 01:01:25] 
[2025-07-23 01:01:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-23 01:01:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-23 01:01:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-23 01:01:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-23 01:01:25] 
[2025-07-23 01:01:25] 2025-07-22 16:00:53,557 | INFO     | ***************************************
[2025-07-23 01:01:25] 2025-07-22 16:00:54,059 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-23 01:01:25] 2025-07-22 16:00:54,068 | INFO     | sufficient remaining disk space (273369006080 B)
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | INFO     | current server update state: UPDATING_FINAL
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | INFO     | update_server=False
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-23 01:01:25] 2025-07-22 16:00:54,069 | INFO     | aborting loop
[2025-07-23 01:01:25] 2025-07-22 16:00:54,279 | INFO     | all payload control threads have been joined
[2025-07-23 01:01:25] 2025-07-22 16:00:54,400 | INFO     | all job control threads have been joined
[2025-07-23 01:01:25] 2025-07-22 16:00:54,441 | INFO     | all data control threads have been joined
[2025-07-23 01:01:25] 2025-07-22 16:00:55,073 | INFO     | [job] retrieve thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,074 | INFO     | [job] queue monitor thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,075 | INFO     | [job] job monitor thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,146 | INFO     | [data] copytool_in thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,156 | INFO     | [payload] failed_post thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,284 | INFO     | [payload] control thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,405 | INFO     | [job] control thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,446 | INFO     | [data] control thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:55,792 | INFO     | [payload] execute_payloads thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,074 | INFO     | [data] copytool_out thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,116 | INFO     | [payload] validate_pre thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,174 | INFO     | [job] validate thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,237 | INFO     | [payload] validate_post thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,262 | INFO     | [job] create_data_payload thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:00:56,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-23 01:01:25] 2025-07-22 16:01:00,786 | INFO     | [data] queue_monitor thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:01:05,097 | INFO     | job.realtimelogging is not enabled
[2025-07-23 01:01:25] 2025-07-22 16:01:06,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-23 01:01:25] 2025-07-22 16:01:07,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140568525166400)>', '<ExcThread(monitor, started 140567895860992)>']
[2025-07-23 01:01:25] 2025-07-22 16:01:12,260 | INFO     | all workflow threads have been joined
[2025-07-23 01:01:25] 2025-07-22 16:01:12,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-23 01:01:25] 2025-07-22 16:01:12,261 | INFO     | traces error code: 0
[2025-07-23 01:01:25] 2025-07-22 16:01:12,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-23 01:01:25] 2025-07-22 16:01:25,022 | INFO     | PID=1017768 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | INFO     | .. there are 3 such processes running
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | INFO     | found 0 job(s) in 20 queues
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-23 01:01:25] 2025-07-22 16:01:25,026 | INFO     | [monitor] control thread has ended
[2025-07-23 01:01:25] 2025-07-22 16:01:25,108 [wrapper] ==== pilot stdout END ====
[2025-07-23 01:01:25] 2025-07-22 16:01:25,110 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-23 01:01:25] 2025-07-22 16:01:25,112 [wrapper] pilotpid: 1017768
[2025-07-23 01:01:25] 2025-07-22 16:01:25,114 [wrapper] Pilot exit status: 0
[2025-07-23 01:01:25] 2025-07-22 16:01:25,120 [wrapper] pandaids: 6741741397
[2025-07-23 01:01:25] 2025-07-22 16:01:25,140 [wrapper] cleanup supervisor_pilot 1087171 1017769
[2025-07-23 01:01:25] 2025-07-22 16:01:25,142 [wrapper] Test setup, not cleaning
[2025-07-23 01:01:25] 2025-07-22 16:01:25,144 [wrapper] apfmon messages muted
[2025-07-23 01:01:25] 2025-07-22 16:01:25,146 [wrapper] ==== wrapper stdout END ====
[2025-07-23 01:01:25] 2025-07-22 16:01:25,148 [wrapper] ==== wrapper stderr END ====
[2025-07-23 01:01:25]  *** Error codes and diagnostics ***
[2025-07-23 01:01:25]     "exeErrorCode": 0,
[2025-07-23 01:01:25]     "exeErrorDiag": "",
[2025-07-23 01:01:25]     "pilotErrorCode": 0,
[2025-07-23 01:01:25]     "pilotErrorDiag": "",
[2025-07-23 01:01:25]  *** Listing of results directory ***
[2025-07-23 01:01:25] total 567392
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc    530466 Jul 22 13:54 pilot3.tar.gz
[2025-07-23 01:01:25] -rwx------. 1 boinc boinc     36292 Jul 22 14:04 runpilot2-wrapper.sh
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc      5112 Jul 22 14:04 queuedata.json
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc       100 Jul 22 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-23 01:01:25] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 23:25 run_atlas
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc       105 Jul 22 23:25 job.xml
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc      9508 Jul 22 23:25 init_data.xml
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc 315871196 Jul 22 23:25 EVNT.45697451._000219.pool.root.1
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc     15095 Jul 22 23:25 start_atlas.sh
[2025-07-23 01:01:25] drwxrwx--x. 2 boinc boinc        68 Jul 22 23:25 shared
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc    542899 Jul 22 23:25 input.tar.gz
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc         0 Jul 22 23:25 boinc_lockfile
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc      2633 Jul 22 23:25 pandaJob.out
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc    977712 Jul 22 23:25 agis_schedconf.cvmfs.json
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc   1593031 Jul 22 23:25 agis_ddmendpoints.agis.ALL.json
[2025-07-23 01:01:25] drwx------. 4 boinc boinc      4096 Jul 22 23:25 pilot3
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc 259561642 Jul 23 01:00 HITS.45697453._005474.pool.root.1
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc       529 Jul 23 01:00 boinc_task_state.xml
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc        95 Jul 23 01:00 pilot_heartbeat.json
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc      1021 Jul 23 01:00 memory_monitor_summary.json
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc    298738 Jul 23 01:00 log.45697453._005474.job.log.tgz.1
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc      7758 Jul 23 01:00 heartbeat.json
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc      8192 Jul 23 01:01 boinc_mmap_file
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc        27 Jul 23 01:01 wrapper_checkpoint.txt
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc       822 Jul 23 01:01 pilotlog.txt
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc    560237 Jul 23 01:01 log.45697453._005474.job.log.1
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc       357 Jul 23 01:01 output.list
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc       620 Jul 23 01:01 runtime_log
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc    880640 Jul 23 01:01 result.tar.gz
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc      8618 Jul 23 01:01 runtime_log.err
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc       642 Jul 23 01:01 KgtNDmNMKy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWVILDmqBf8Zm.diag
[2025-07-23 01:01:25] -rw-r--r--. 1 boinc boinc     21429 Jul 23 01:01 stderr.txt
[2025-07-23 01:01:25] HITS file was successfully produced:
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc 259561642 Jul 23 01:00 shared/HITS.pool.root.1
[2025-07-23 01:01:25]  *** Contents of shared directory: ***
[2025-07-23 01:01:25] total 563356
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc 315871196 Jul 22 23:25 ATLAS.root_0
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc     15095 Jul 22 23:25 start_atlas.sh
[2025-07-23 01:01:25] -rw-r--r--. 2 boinc boinc    542899 Jul 22 23:25 input.tar.gz
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc 259561642 Jul 23 01:00 HITS.pool.root.1
[2025-07-23 01:01:25] -rw-------. 1 boinc boinc    880640 Jul 23 01:01 result.tar.gz
01:01:27 (1014064): run_atlas exited; CPU time 29225.016903
01:01:27 (1014064): called boinc_finish(0)

</stderr_txt>
]]>

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