Stderr output

<core_client_version>8.0.3</core_client_version>
<![CDATA[
<stderr_txt>
13:52:44 (79289): wrapper (7.7.26015): starting
13:52:44 (79289): wrapper: running run_atlas (--nthreads 4)
[2025-07-22 13:52:44] Arguments: --nthreads 4
[2025-07-22 13:52:44] Threads: 4
[2025-07-22 13:52:44] Checking for CVMFS
[2025-07-22 13:52:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 13:52:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 13:52:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 13:52:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 13:52:50] 2.13.1.0 79548 0 30372 148621 3 1 2241851 6144001 0 130560 0 0 0.000 1291 845 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-22 13:52:50] CVMFS is ok
[2025-07-22 13:52:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 13:52:50] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-22 13:52:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-22 13:52:50] Further information can be found at the LHC@home message board.
[2025-07-22 13:52:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 13:52:50] Checking for apptainer binary...
[2025-07-22 13:52:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 13:52:50] Running /usr/bin/apptainer --version
[2025-07-22 13:52:50] apptainer version 1.4.1
[2025-07-22 13:52:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 13:52:50] archlinux
[2025-07-22 13:52:50] apptainer works
[2025-07-22 13:52:50] Set ATHENA_PROC_NUMBER=4
[2025-07-22 13:52:50] Set ATHENA_CORE_NUMBER=4
[2025-07-22 13:52:50] Starting ATLAS job with PandaID=6741743544
[2025-07-22 13:52:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 20:06:21]  *** The last 200 lines of the pilot log: ***
[2025-07-22 20:06:21] 2025-07-22 19:05:49,797 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 20:06:21] 2025-07-22 19:05:49,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 20:06:21] 2025-07-22 19:05:49,797 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 20:06:21] 2025-07-22 19:05:49,797 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 20:06:21] 2025-07-22 19:05:49,801 | INFO     | fitting pss+swap vs Time
[2025-07-22 20:06:21] 2025-07-22 19:05:49,802 | INFO     | sum of square deviations: 15327572968.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,804 | INFO     | sum of deviations: 14032529975.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,804 | INFO     | mean x: 1753199973.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,804 | INFO     | mean y: 2422002.2561307903
[2025-07-22 20:06:21] 2025-07-22 19:05:49,804 | INFO     | -- intersect: -1602648234.5422156
[2025-07-22 20:06:21] 2025-07-22 19:05:49,804 | INFO     | intersect: -1602648234.5422156
[2025-07-22 20:06:21] 2025-07-22 19:05:49,805 | INFO     | chi2: 2.32212355235158
[2025-07-22 20:06:21] 2025-07-22 19:05:49,805 | INFO     | sum of square deviations: 14709598590.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,807 | INFO     | sum of deviations: 35377672514.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,807 | INFO     | mean x: 1753199820.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,807 | INFO     | mean y: 2427210.002762431
[2025-07-22 20:06:21] 2025-07-22 19:05:49,807 | INFO     | -- intersect: -4214148022.865023
[2025-07-22 20:06:21] 2025-07-22 19:05:49,807 | INFO     | intersect: -4214148022.865023
[2025-07-22 20:06:21] 2025-07-22 19:05:49,808 | INFO     | chi2: 1.6660129518678513
[2025-07-22 20:06:21] 2025-07-22 19:05:49,808 | INFO     | current chi2=1.6660129518678513 (change=28.25476705661485 %)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,808 | INFO     | sum of square deviations: 14108461738.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,810 | INFO     | sum of deviations: 34662441994.000015
[2025-07-22 20:06:21] 2025-07-22 19:05:49,810 | INFO     | mean x: 1753199668.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,810 | INFO     | mean y: 2427028.9411764704
[2025-07-22 20:06:21] 2025-07-22 19:05:49,810 | INFO     | -- intersect: -4304929997.251872
[2025-07-22 20:06:21] 2025-07-22 19:05:49,810 | INFO     | intersect: -4304929997.251872
[2025-07-22 20:06:21] 2025-07-22 19:05:49,811 | INFO     | chi2: 1.6663492784139338
[2025-07-22 20:06:21] 2025-07-22 19:05:49,811 | INFO     | current chi2=1.6663492784139338 (change=-0.02018751088972254 %)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,811 | INFO     | right removable region: 356
[2025-07-22 20:06:21] 2025-07-22 19:05:49,811 | INFO     | sum of square deviations: 14709598590.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,813 | INFO     | sum of deviations: -42530865788.00001
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | mean x: 1753200125.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | mean y: 2435876.4033149173
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | -- intersect: 5071582989.996351
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | intersect: 5071582989.996351
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | chi2: 0.8309902714921891
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | current chi2=0.8309902714921891 (change=64.21420941832929 %)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,814 | INFO     | sum of square deviations: 14108461738.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,816 | INFO     | sum of deviations: -27011841818.999992
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | mean x: 1753200278.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | mean y: 2431933.949579832
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | -- intersect: 3359081968.9289503
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | intersect: 3359081968.9289503
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | chi2: 0.7709801934930676
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | current chi2=0.7709801934930676 (change=7.221513904291907 %)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,817 | INFO     | left removable region: 20
[2025-07-22 20:06:21] 2025-07-22 19:05:49,818 | INFO     | sum of square deviations: 11762304260.0
[2025-07-22 20:06:21] 2025-07-22 19:05:49,819 | INFO     | sum of deviations: 15370659158.999998
[2025-07-22 20:06:21] 2025-07-22 19:05:49,819 | INFO     | mean x: 1753200247.5
[2025-07-22 20:06:21] 2025-07-22 19:05:49,819 | INFO     | mean y: 2431466.535714286
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | -- intersect: -2288602912.9640846
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | intersect: -2288602912.9640846
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | chi2: 0.009416572680082008
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | -- intersect: -2288602912.9640846
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | current memory leak: 1.31 B/s (using 336 data points, chi2=0.01)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | could have reported an average CPU frequency of 2308 MHz (16 samples)
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | ..............................
[2025-07-22 20:06:21] 2025-07-22 19:05:49,820 | INFO     | . Timing measurements:
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . get job = 0 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . initial setup = 2 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . payload setup = 5 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . stage-in = 0 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . payload execution = 22334 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . stage-out = 1 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | . log creation = 0 s
[2025-07-22 20:06:21] 2025-07-22 19:05:49,821 | INFO     | ..............................
[2025-07-22 20:06:21] 2025-07-22 19:05:50,130 | INFO     | 
[2025-07-22 20:06:21] 2025-07-22 19:05:50,130 | INFO     | job summary report
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | --------------------------------------------------
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | PanDA job id: 6741743544
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | task id: 45697472
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | errors: (none)
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | pilot state: finished 
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | transexitcode: 0
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | exeerrorcode: 0
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | exeerrordiag: 
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | exitcode: 0
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | exitmsg: OK
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | cpuconsumptiontime: 82241 s
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | nevents: 400
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | neventsw: 0
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | pid: 90128
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | pgrp: 90128
[2025-07-22 20:06:21] 2025-07-22 19:05:50,131 | INFO     | corecount: 4
[2025-07-22 20:06:21] 2025-07-22 19:05:50,132 | INFO     | event service: False
[2025-07-22 20:06:21] 2025-07-22 19:05:50,132 | INFO     | sizes: {0: 2397357, 1: 2397556, 4: 2397818, 11: 2397846, 22343: 2432315, 22344: 2432314, 22345: 2441496, 22346: 2441552, 22350: 2441746}
[2025-07-22 20:06:21] 2025-07-22 19:05:50,132 | INFO     | --------------------------------------------------
[2025-07-22 20:06:21] 2025-07-22 19:05:50,132 | INFO     | 
[2025-07-22 20:06:21] 2025-07-22 19:05:50,132 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-07-22 20:06:21] 2025-07-22 19:05:50,146 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,146 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 20:06:21] 2025-07-22 19:05:50,148 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,148 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 20:06:21] 2025-07-22 19:05:50,148 | INFO     | job 6741743544 has completed (purged errors)
[2025-07-22 20:06:21] 2025-07-22 19:05:50,148 | INFO     | overall cleanup function is called
[2025-07-22 20:06:21] 2025-07-22 19:05:51,152 | INFO     | --- collectZombieJob: --- 10, [90128]
[2025-07-22 20:06:21] 2025-07-22 19:05:51,153 | INFO     | zombie collector waiting for pid 90128
[2025-07-22 20:06:21] 2025-07-22 19:05:51,153 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 20:06:21] 2025-07-22 19:05:51,153 | INFO     | collected zombie processes
[2025-07-22 20:06:21] 2025-07-22 19:05:51,154 | INFO     | will attempt to kill all subprocesses of pid=90128
[2025-07-22 20:06:21] 2025-07-22 19:05:51,216 | INFO     | process IDs to be killed: [90128] (in reverse order)
[2025-07-22 20:06:21] 2025-07-22 19:05:51,243 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 20:06:21] 2025-07-22 19:05:51,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 20:06:21] 2025-07-22 19:05:51,245 | INFO     | did not find any defunct processes belonging to 90128
[2025-07-22 20:06:21] 2025-07-22 19:05:51,246 | INFO     | did not find any defunct processes belonging to 90128
[2025-07-22 20:06:21] 2025-07-22 19:05:51,246 | INFO     | ready for new job
[2025-07-22 20:06:21] 2025-07-22 19:05:51,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 20:06:21] 2025-07-22 19:05:51,247 | INFO     | ***************************************
[2025-07-22 20:06:21] 2025-07-22 19:05:51,248 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 20:06:21] 2025-07-22 19:05:51,248 | INFO     | ***************************************
[2025-07-22 20:06:21] 2025-07-22 19:05:51,248 | INFO     | 
[2025-07-22 20:06:21] 2025-07-22 19:05:51,248 | INFO     | architecture information:
[2025-07-22 20:06:21] 2025-07-22 19:05:51,248 | INFO     | executing command: cat /etc/os-release
[2025-07-22 20:06:21] 2025-07-22 19:05:51,257 | INFO     | cat /etc/os-release:
[2025-07-22 20:06:21] NAME="CentOS Linux"
[2025-07-22 20:06:21] VERSION="7 (Core)"
[2025-07-22 20:06:21] ID="centos"
[2025-07-22 20:06:21] ID_LIKE="rhel fedora"
[2025-07-22 20:06:21] VERSION_ID="7"
[2025-07-22 20:06:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 20:06:21] ANSI_COLOR="0;31"
[2025-07-22 20:06:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 20:06:21] HOME_URL="https://www.centos.org/"
[2025-07-22 20:06:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 20:06:21] 
[2025-07-22 20:06:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 20:06:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 20:06:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 20:06:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 20:06:21] 
[2025-07-22 20:06:21] 2025-07-22 19:05:51,257 | INFO     | ***************************************
[2025-07-22 20:06:21] 2025-07-22 19:05:51,760 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | INFO     | sufficient remaining disk space (22993174528 B)
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | INFO     | update_server=False
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 20:06:21] 2025-07-22 19:05:51,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:06:21] 2025-07-22 19:05:51,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 20:06:21] 2025-07-22 19:05:51,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 20:06:21] 2025-07-22 19:05:52,569 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:06:21] 2025-07-22 19:05:52,569 | INFO     | aborting loop
[2025-07-22 20:06:21] 2025-07-22 19:05:52,668 | INFO     | all data control threads have been joined
[2025-07-22 20:06:21] 2025-07-22 19:05:52,718 | INFO     | all payload control threads have been joined
[2025-07-22 20:06:21] 2025-07-22 19:05:52,777 | INFO     | [job] retrieve thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:52,777 | INFO     | [job] queue monitor thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:52,815 | INFO     | [payload] validate_post thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,117 | INFO     | all job control threads have been joined
[2025-07-22 20:06:21] 2025-07-22 19:05:53,173 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,197 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,575 | INFO     | [job] job monitor thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,638 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,674 | INFO     | [data] control thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,710 | INFO     | [payload] failed_post thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,723 | INFO     | [payload] control thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,778 | INFO     | [data] copytool_out thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:53,815 | INFO     | [job] validate thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:54,050 | INFO     | [data] copytool_in thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:54,120 | INFO     | [job] control thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:05:55,778 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:06:02,491 | INFO     | job.realtimelogging is not enabled
[2025-07-22 20:06:21] 2025-07-22 19:06:03,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 20:06:21] 2025-07-22 19:06:04,910 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139703068350272)>', '<ExcThread(monitor, started 139702577383168)>']
[2025-07-22 20:06:21] 2025-07-22 19:06:09,933 | INFO     | all workflow threads have been joined
[2025-07-22 20:06:21] 2025-07-22 19:06:09,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 20:06:21] 2025-07-22 19:06:09,934 | INFO     | traces error code: 0
[2025-07-22 20:06:21] 2025-07-22 19:06:09,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 20:06:21] 2025-07-22 19:06:21,323 | INFO     | PID=83622 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-22 20:06:21] 2025-07-22 19:06:21,324 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 20:06:21] 2025-07-22 19:06:21,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 20:06:21] 2025-07-22 19:06:21,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 20:06:21] 2025-07-22 19:06:21,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 20:06:21] 2025-07-22 19:06:21,324 | INFO     | [monitor] control thread has ended
[2025-07-22 20:06:21] 2025-07-22 19:06:21,429 [wrapper] ==== pilot stdout END ====
[2025-07-22 20:06:21] 2025-07-22 19:06:21,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 20:06:21] 2025-07-22 19:06:21,433 [wrapper] pilotpid: 83622
[2025-07-22 20:06:21] 2025-07-22 19:06:21,436 [wrapper] Pilot exit status: 0
[2025-07-22 20:06:21] 2025-07-22 19:06:21,446 [wrapper] pandaids: 6741743544
[2025-07-22 20:06:21] 2025-07-22 19:06:21,465 [wrapper] cleanup supervisor_pilot  199416 83623
[2025-07-22 20:06:21] 2025-07-22 19:06:21,468 [wrapper] Test setup, not cleaning
[2025-07-22 20:06:21] 2025-07-22 19:06:21,470 [wrapper] apfmon messages muted
[2025-07-22 20:06:21] 2025-07-22 19:06:21,473 [wrapper] ==== wrapper stdout END ====
[2025-07-22 20:06:21] 2025-07-22 19:06:21,475 [wrapper] ==== wrapper stderr END ====
[2025-07-22 20:06:21]  *** Error codes and diagnostics ***
[2025-07-22 20:06:21]     "exeErrorCode": 0,
[2025-07-22 20:06:21]     "exeErrorDiag": "",
[2025-07-22 20:06:21]     "pilotErrorCode": 0,
[2025-07-22 20:06:21]     "pilotErrorDiag": "",
[2025-07-22 20:06:21]  *** Listing of results directory ***
[2025-07-22 20:06:21] total 602956
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc    530466 Jul 22 06:51 pilot3.tar.gz
[2025-07-22 20:06:21] -rwx------ 1 boinc boinc     36292 Jul 22 07:18 runpilot2-wrapper.sh
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc      5112 Jul 22 07:18 queuedata.json
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc       100 Jul 22 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 20:06:21] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 13:52 run_atlas
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc       105 Jul 22 13:52 job.xml
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc 330736785 Jul 22 13:52 EVNT.45697470._000020.pool.root.1
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc      6493 Jul 22 13:52 init_data.xml
[2025-07-22 20:06:21] drwxrwx--x 2 boinc boinc      4096 Jul 22 13:52 shared
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc    542891 Jul 22 13:52 input.tar.gz
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc     15095 Jul 22 13:52 start_atlas.sh
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc         0 Jul 22 13:52 boinc_lockfile
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc      2609 Jul 22 13:52 pandaJob.out
[2025-07-22 20:06:21] -rw------- 1 boinc boinc    976654 Jul 22 13:53 agis_schedconf.cvmfs.json
[2025-07-22 20:06:21] drwx------ 4 boinc boinc      4096 Jul 22 13:53 pilot3
[2025-07-22 20:06:21] -rw------- 1 boinc boinc 278042387 Jul 22 20:05 HITS.45697472._000479.pool.root.1
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc       530 Jul 22 20:05 boinc_task_state.xml
[2025-07-22 20:06:21] -rw------- 1 boinc boinc      1025 Jul 22 20:05 memory_monitor_summary.json
[2025-07-22 20:06:21] -rw------- 1 boinc boinc   1593031 Jul 22 20:05 agis_ddmendpoints.agis.ALL.json
[2025-07-22 20:06:21] -rw------- 1 boinc boinc    397572 Jul 22 20:05 log.45697472._000479.job.log.tgz.1
[2025-07-22 20:06:21] -rw------- 1 boinc boinc      7757 Jul 22 20:05 heartbeat.json
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc        28 Jul 22 20:06 wrapper_checkpoint.txt
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc      8192 Jul 22 20:06 boinc_mmap_file
[2025-07-22 20:06:21] -rw------- 1 boinc boinc       745 Jul 22 20:06 pilotlog.txt
[2025-07-22 20:06:21] -rw------- 1 boinc boinc        95 Jul 22 20:06 pilot_heartbeat.json
[2025-07-22 20:06:21] -rw------- 1 boinc boinc   1989635 Jul 22 20:06 log.45697472._000479.job.log.1
[2025-07-22 20:06:21] -rw------- 1 boinc boinc       357 Jul 22 20:06 output.list
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc       620 Jul 22 20:06 runtime_log
[2025-07-22 20:06:21] -rw------- 1 boinc boinc   2406400 Jul 22 20:06 result.tar.gz
[2025-07-22 20:06:21] -rw------- 1 boinc boinc       647 Jul 22 20:06 t62KDmSVLy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4eILDmcnBaUm.diag
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc      8616 Jul 22 20:06 runtime_log.err
[2025-07-22 20:06:21] -rw-r--r-- 1 boinc boinc     20946 Jul 22 20:06 stderr.txt
[2025-07-22 20:06:21] HITS file was successfully produced:
[2025-07-22 20:06:21] -rw------- 1 boinc boinc 278042387 Jul 22 20:05 shared/HITS.pool.root.1
[2025-07-22 20:06:21]  *** Contents of shared directory: ***
[2025-07-22 20:06:21] total 597420
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc 330736785 Jul 22 13:52 ATLAS.root_0
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc    542891 Jul 22 13:52 input.tar.gz
[2025-07-22 20:06:21] -rw-r--r-- 2 boinc boinc     15095 Jul 22 13:52 start_atlas.sh
[2025-07-22 20:06:21] -rw------- 1 boinc boinc 278042387 Jul 22 20:05 HITS.pool.root.1
[2025-07-22 20:06:21] -rw------- 1 boinc boinc   2406400 Jul 22 20:06 result.tar.gz
20:06:23 (79289): run_atlas exited; CPU time 82414.316460
20:06:23 (79289): called boinc_finish(0)

</stderr_txt>
]]>

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