Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:18:06 (576806): wrapper (7.7.26015): starting
05:18:06 (576806): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 05:18:06] Arguments: --nthreads 12
[2025-07-22 05:18:06] Threads: 12
[2025-07-22 05:18:06] Checking for CVMFS
[2025-07-22 05:18:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 05:18:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 05:18:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 05:18:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 05:18:07] 2.11.5.0 6647 29931 141596 148621 1 29 37968388 45568001 24585 130560 0 212611372 99.739 167010708 27417 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-22 05:18:07] CVMFS is ok
[2025-07-22 05:18:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 05:18:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 05:18:07] Further information can be found at the LHC@home message board.
[2025-07-22 05:18:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 05:18:07] Checking for apptainer binary...
[2025-07-22 05:18:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 05:18:08] Running /usr/bin/apptainer --version
[2025-07-22 05:18:08] apptainer version 1.4.1-1.el9
[2025-07-22 05:18:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 05:18:09] wns0055.triumf.lcg
[2025-07-22 05:18:09] apptainer works
[2025-07-22 05:18:09] Set ATHENA_PROC_NUMBER=12
[2025-07-22 05:18:09] Set ATHENA_CORE_NUMBER=12
[2025-07-22 05:18:09] Starting ATLAS job with PandaID=6741761594
[2025-07-22 05:18:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 05:23:45]  *** The last 200 lines of the pilot log: ***
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | WARNING  | wrong length of table data, x=[1753186806.0], y=[635.0] (must be same and length>=4)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | could have reported an average CPU frequency of 2680 MHz (4 samples)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . Timing measurements:
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . get job = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . initial setup = 3 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload setup = 20 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-in = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload execution = 73 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-out = 1 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . log creation = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741761594/pilotlog.txt
[2025-07-22 05:23:45] 2025-07-22 12:23:11,062 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 05:23:45] - Log from pilotlog.txt -
[2025-07-22 05:23:45] 2025-07-22 12:23:11,003 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741761594/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,003 | INFO     | extracted standard info from prmon json
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | WARNING  | wrong length of table data, x=[1753186806.0], y=[635.0] (must be same and length>=4)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | could have reported an average CPU frequency of 2680 MHz (4 samples)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . Timing measurements:
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . get job = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . initial setup = 3 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload setup = 20 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-in = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload execution = 73 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-out = 1 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . log creation = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741761594/pilotlog.txt
[2025-07-22 05:23:45] 2025-07-22 12:23:11,062 | WARNING  | 
[2025-07-22 05:23:45] [begin log extracts]
[2025-07-22 05:23:45] - Log from pilotlog.txt -
[2025-07-22 05:23:45] 2025-07-22 12:23:11,003 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741761594/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,003 | INFO     | extracted standard info from prmon json
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 05:23:45] 2025-07-22 12:23:11,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | WARNING  | wrong length of table data, x=[1753186806.0], y=[635.0] (must be same and length>=4)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | could have reported an average CPU frequency of 2680 MHz (4 samples)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . Timing measurements:
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . get job = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . initial setup = 3 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload setup = 20 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-in = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . payload execution = 73 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . stage-out = 1 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | . log creation = 0 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,011 | INFO     | ..............................
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 05:23:45] 2025-07-22 12:23:11,012 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741761594/pilotlog.txt
[2025-07-22 05:23:45] [end log extracts]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,062 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,063 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | 
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | job summary report
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | --------------------------------------------------
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | PanDA job id: 6741761594
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | task id: 45697472
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 05:20:51,612 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | pilot state: failed 
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | transexitcode: 65
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | exeerrorcode: 65
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,306 | INFO     | exitcode: 65
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | cpuconsumptiontime: 18 s
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | nevents: 0
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | neventsw: 0
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | pid: 595075
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | pgrp: 595075
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | corecount: 12
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | event service: False
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | sizes: {0: 2397522, 1: 2397522, 11: 2397550, 14: 2397840, 23: 2397868, 97: 2421291, 99: 2425583, 100: 2425611, 227: 2425777}
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | --------------------------------------------------
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | 
[2025-07-22 05:23:45] 2025-07-22 12:23:11,329 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,512 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | job 6741761594 has completed (purged errors)
[2025-07-22 05:23:45] 2025-07-22 12:23:11,513 | INFO     | overall cleanup function is called
[2025-07-22 05:23:45] 2025-07-22 12:23:12,520 | INFO     | --- collectZombieJob: --- 10, [595075]
[2025-07-22 05:23:45] 2025-07-22 12:23:12,520 | INFO     | zombie collector waiting for pid 595075
[2025-07-22 05:23:45] 2025-07-22 12:23:12,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 05:23:45] 2025-07-22 12:23:12,520 | INFO     | collected zombie processes
[2025-07-22 05:23:45] 2025-07-22 12:23:12,520 | INFO     | will attempt to kill all subprocesses of pid=595075
[2025-07-22 05:23:45] 2025-07-22 12:23:12,805 | INFO     | process IDs to be killed: [595075] (in reverse order)
[2025-07-22 05:23:45] 2025-07-22 12:23:12,901 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 05:23:45] 2025-07-22 12:23:12,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 05:23:45] 2025-07-22 12:23:12,925 | INFO     | did not find any defunct processes belonging to 595075
[2025-07-22 05:23:45] 2025-07-22 12:23:12,938 | INFO     | did not find any defunct processes belonging to 595075
[2025-07-22 05:23:45] 2025-07-22 12:23:12,939 | INFO     | ready for new job
[2025-07-22 05:23:45] 2025-07-22 12:23:12,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 05:23:45] 2025-07-22 12:23:12,940 | INFO     | ***************************************
[2025-07-22 05:23:45] 2025-07-22 12:23:12,940 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 05:23:45] 2025-07-22 12:23:12,940 | INFO     | ***************************************
[2025-07-22 05:23:45] 2025-07-22 12:23:12,941 | INFO     | 
[2025-07-22 05:23:45] 2025-07-22 12:23:12,942 | INFO     | architecture information:
[2025-07-22 05:23:45] 2025-07-22 12:23:12,943 | INFO     | executing command: cat /etc/os-release
[2025-07-22 05:23:45] 2025-07-22 12:23:12,956 | INFO     | cat /etc/os-release:
[2025-07-22 05:23:45] NAME="CentOS Linux"
[2025-07-22 05:23:45] VERSION="7 (Core)"
[2025-07-22 05:23:45] ID="centos"
[2025-07-22 05:23:45] ID_LIKE="rhel fedora"
[2025-07-22 05:23:45] VERSION_ID="7"
[2025-07-22 05:23:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 05:23:45] ANSI_COLOR="0;31"
[2025-07-22 05:23:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 05:23:45] HOME_URL="https://www.centos.org/"
[2025-07-22 05:23:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 05:23:45] 
[2025-07-22 05:23:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 05:23:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 05:23:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 05:23:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 05:23:45] 
[2025-07-22 05:23:45] 2025-07-22 12:23:12,957 | INFO     | ***************************************
[2025-07-22 05:23:45] 2025-07-22 12:23:13,465 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 05:23:45] 2025-07-22 12:23:13,480 | INFO     | sufficient remaining disk space (1225188704256 B)
[2025-07-22 05:23:45] 2025-07-22 12:23:13,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 05:23:45] 2025-07-22 12:23:13,481 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 05:23:45] 2025-07-22 12:23:13,481 | INFO     | update_server=False
[2025-07-22 05:23:45] 2025-07-22 12:23:13,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 05:23:45] 2025-07-22 12:23:13,925 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 05:23:45] 2025-07-22 12:23:13,925 | INFO     | aborting loop
[2025-07-22 05:23:45] 2025-07-22 12:23:14,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 05:23:45] 2025-07-22 12:23:14,447 | INFO     | all data control threads have been joined
[2025-07-22 05:23:45] 2025-07-22 12:23:14,487 | INFO     | [job] retrieve thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:14,493 | INFO     | [payload] failed_post thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:14,758 | INFO     | [job] validate thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:14,774 | INFO     | all payload control threads have been joined
[2025-07-22 05:23:45] 2025-07-22 12:23:14,931 | INFO     | [job] job monitor thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:14,946 | INFO     | [payload] validate_post thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:14,974 | INFO     | all job control threads have been joined
[2025-07-22 05:23:45] 2025-07-22 12:23:15,058 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,193 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,193 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,258 | INFO     | [data] copytool_in thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,453 | INFO     | [data] control thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,781 | INFO     | [payload] control thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:15,981 | INFO     | [job] control thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:16,174 | INFO     | [data] copytool_out thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:16,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 05:23:45] 2025-07-22 12:23:16,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 05:23:45] 2025-07-22 12:23:17,328 | INFO     | [job] queue monitor thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:20,837 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 05:23:45] 2025-07-22 12:23:21,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943777744704)>', '<ExcThread(monitor, started 139943112337152)>']
[2025-07-22 05:23:45] 2025-07-22 12:23:26,533 | INFO     | all workflow threads have been joined
[2025-07-22 05:23:45] 2025-07-22 12:23:26,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 05:23:45] 2025-07-22 12:23:26,533 | INFO     | traces error code: 0
[2025-07-22 05:23:45] 2025-07-22 12:23:26,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 05:23:45] 2025-07-22 12:23:44,659 | INFO     | PID=580421 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 05:23:45] 2025-07-22 12:23:44,659 | INFO     | .. there are 41 such processes running
[2025-07-22 05:23:45] 2025-07-22 12:23:44,660 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 05:23:45] 2025-07-22 12:23:44,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 05:23:45] 2025-07-22 12:23:44,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 05:23:45] 2025-07-22 12:23:44,660 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 05:23:45] 2025-07-22 12:23:44,660 | INFO     | [monitor] control thread has ended
[2025-07-22 05:23:45] 2025-07-22 12:23:44,819 [wrapper] ==== pilot stdout END ====
[2025-07-22 05:23:45] 2025-07-22 12:23:44,844 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 05:23:45] 2025-07-22 12:23:44,877 [wrapper] pilotpid: 580421
[2025-07-22 05:23:45] 2025-07-22 12:23:44,912 [wrapper] Pilot exit status: 0
[2025-07-22 05:23:45] 2025-07-22 12:23:45,051 [wrapper] pandaids: 6741761594
[2025-07-22 05:23:45] 2025-07-22 12:23:45,302 [wrapper] cleanup supervisor_pilot  580427 580422
[2025-07-22 05:23:45] 2025-07-22 12:23:45,338 [wrapper] Test setup, not cleaning
[2025-07-22 05:23:45] 2025-07-22 12:23:45,349 [wrapper] apfmon messages muted
[2025-07-22 05:23:45] 2025-07-22 12:23:45,362 [wrapper] ==== wrapper stdout END ====
[2025-07-22 05:23:45] 2025-07-22 12:23:45,373 [wrapper] ==== wrapper stderr END ====
[2025-07-22 05:23:45]  *** Error codes and diagnostics ***
[2025-07-22 05:23:45]     "exeErrorCode": 65,
[2025-07-22 05:23:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 05:23:45]     "pilotErrorCode": 1305,
[2025-07-22 05:23:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 05:23:45]  *** Listing of results directory ***
[2025-07-22 05:23:45] total 326116
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc    530466 Jul 22 01:26 pilot3.tar.gz
[2025-07-22 05:23:45] -rwx------. 1 boinc boinc     36292 Jul 22 01:54 runpilot2-wrapper.sh
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc      5112 Jul 22 01:54 queuedata.json
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc       100 Jul 22 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 05:23:45] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 05:18 run_atlas
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc       105 Jul 22 05:18 job.xml
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc      6596 Jul 22 05:18 init_data.xml
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc 329865786 Jul 22 05:18 EVNT.45697470._000092.pool.root.1
[2025-07-22 05:23:45] drwxrwx--x. 2 boinc boinc      4096 Jul 22 05:18 shared
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc    542895 Jul 22 05:18 input.tar.gz
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc     15095 Jul 22 05:18 start_atlas.sh
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc         0 Jul 22 05:18 boinc_lockfile
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc      2607 Jul 22 05:18 pandaJob.out
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc    976654 Jul 22 05:18 agis_schedconf.cvmfs.json
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc   1593031 Jul 22 05:18 agis_ddmendpoints.agis.ALL.json
[2025-07-22 05:23:45] drwx------. 4 boinc boinc      4096 Jul 22 05:18 pilot3
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc       523 Jul 22 05:20 boinc_task_state.xml
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc       977 Jul 22 05:20 memory_monitor_summary.json
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc     21048 Jul 22 05:21 log.45697472._001776.job.log.tgz.1
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc      8407 Jul 22 05:23 heartbeat.json
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc        22 Jul 22 05:23 wrapper_checkpoint.txt
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc       822 Jul 22 05:23 pilotlog.txt
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc        95 Jul 22 05:23 pilot_heartbeat.json
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc      8192 Jul 22 05:23 boinc_mmap_file
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc     81286 Jul 22 05:23 log.45697472._001776.job.log.1
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc       188 Jul 22 05:23 output.list
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc       620 Jul 22 05:23 runtime_log
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc    122880 Jul 22 05:23 result.tar.gz
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc      8485 Jul 22 05:23 runtime_log.err
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc       647 Jul 22 05:23 Ec8LDm6wNy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2iuKDmO35OYn.diag
[2025-07-22 05:23:45] -rw-r--r--. 1 boinc boinc     21802 Jul 22 05:23 stderr.txt
[2025-07-22 05:23:45] No HITS result produced
[2025-07-22 05:23:45]  *** Contents of shared directory: ***
[2025-07-22 05:23:45] total 322808
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc 329865786 Jul 22 05:18 ATLAS.root_0
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc    542895 Jul 22 05:18 input.tar.gz
[2025-07-22 05:23:45] -rw-r--r--. 2 boinc boinc     15095 Jul 22 05:18 start_atlas.sh
[2025-07-22 05:23:45] -rw-------. 1 boinc boinc    122880 Jul 22 05:23 result.tar.gz
05:23:47 (576806): run_atlas exited; CPU time 27.762529
05:23:47 (576806): called boinc_finish(0)

</stderr_txt>
]]>

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