Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:11:24 (25877): wrapper (7.7.26015): starting
06:11:24 (25877): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 06:11:24] Arguments: --nthreads 12
[2025-07-22 06:11:24] Threads: 12
[2025-07-22 06:11:24] Checking for CVMFS
[2025-07-22 06:11:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 06:11:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 06:11:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 06:11:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 06:11:24] 2.11.2.0 2924 104619 96620 148617 0 56 13041144 20275200 1 130560 0 33735086 99.968 10003043 11055 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 06:11:24] CVMFS is ok
[2025-07-22 06:11:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 06:11:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 06:11:24] Further information can be found at the LHC@home message board.
[2025-07-22 06:11:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 06:11:24] Checking for apptainer binary...
[2025-07-22 06:11:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 06:11:24] Running /usr/bin/apptainer --version
[2025-07-22 06:11:24] apptainer version 1.3.2-1.el7
[2025-07-22 06:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 06:11:26] c-205-28.aglt2.org
[2025-07-22 06:11:26] apptainer works
[2025-07-22 06:11:26] Set ATHENA_PROC_NUMBER=12
[2025-07-22 06:11:26] Set ATHENA_CORE_NUMBER=12
[2025-07-22 06:11:26] Starting ATLAS job with PandaID=6741739428
[2025-07-22 06:11:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 07:51:23]  *** The last 200 lines of the pilot log: ***
[2025-07-22 07:51:23]  mtime=0
[2025-07-22 07:51:23]  protocol_id=None
[2025-07-22 07:51:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 07:51:23]  replicas=None
[2025-07-22 07:51:23]  scope=mc23_13p6TeV
[2025-07-22 07:51:23]  status=None
[2025-07-22 07:51:23]  status_code=0
[2025-07-22 07:51:23]  storage_token=
[2025-07-22 07:51:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6741739428/log.45697453._004867.job.log.tgz.1
[2025-07-22 07:51:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/be/log.45697453._004867.job.log.tgz.1
[2025-07-22 07:51:23]  workdir=None
[2025-07-22 07:51:23] ]
[2025-07-22 07:51:23] 2025-07-22 11:50:44,975 | INFO     | transferring file log.45697453._004867.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6741739428/log.45697453._004867.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-22 07:51:23] 2025-07-22 11:50:44,976 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6741739428/log.45697453._004867.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697453._004867.job
[2025-07-22 07:51:23] 2025-07-22 11:50:44,998 | INFO     | adding to output.list: log.45697453._004867.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/be/log.45697453._004867.job.log.tg
[2025-07-22 07:51:23] 2025-07-22 11:50:44,999 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 07:51:23] 2025-07-22 11:50:44,999 | INFO     | summary of transferred files:
[2025-07-22 07:51:23] 2025-07-22 11:50:44,999 | INFO     |  -- lfn=log.45697453._004867.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 07:51:23] 2025-07-22 11:50:45,000 | INFO     | stage-out finished correctly
[2025-07-22 07:51:23] 2025-07-22 11:50:46,199 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 07:51:23] 2025-07-22 11:50:46,279 | INFO     | job 6741739428 has state=finished
[2025-07-22 07:51:23] 2025-07-22 11:50:46,279 | INFO     | preparing for final server update for job 6741739428 in state='finished'
[2025-07-22 07:51:23] 2025-07-22 11:50:46,280 | INFO     | this job has now completed (state=finished)
[2025-07-22 07:51:23] 2025-07-22 11:50:46,280 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 07:51:23] 2025-07-22 11:50:46,280 | INFO     | log transfer has been attempted: DONE
[2025-07-22 07:51:23] 2025-07-22 11:50:46,280 | INFO     | job 6741739428 has finished - writing final server update
[2025-07-22 07:51:23] 2025-07-22 11:50:46,281 | INFO     | total number of processed events: 400 (read)
[2025-07-22 07:51:23] 2025-07-22 11:50:46,282 | INFO     | executing command: lscpu
[2025-07-22 07:51:23] 2025-07-22 11:50:46,308 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 07:51:23] 2025-07-22 11:50:48,528 | WARNING  | process 3784 can no longer be monitored (due to stat problems) - aborting
[2025-07-22 07:51:23] 2025-07-22 11:50:48,529 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741739428/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 07:51:23] 2025-07-22 11:50:48,617 | INFO     | number of running child processes to parent process 3784: 1
[2025-07-22 07:51:23] 2025-07-22 11:50:48,617 | INFO     | maximum number of monitored processes: 6
[2025-07-22 07:51:23] 2025-07-22 11:50:50,832 | INFO     | PID=29478 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,120 | INFO     | monitor loop #441: job 0:6741739428 is in state 'finished'
[2025-07-22 07:51:23] 2025-07-22 11:50:51,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,450 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-22 07:51:23] 2025-07-22 11:50:51,452 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-22 07:51:23] 2025-07-22 11:50:51,454 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741739428/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,454 | INFO     | extracted standard info from prmon json
[2025-07-22 07:51:23] 2025-07-22 11:50:51,454 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 07:51:23] 2025-07-22 11:50:51,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 07:51:23] 2025-07-22 11:50:51,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 07:51:23] 2025-07-22 11:50:51,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 07:51:23] 2025-07-22 11:50:51,457 | INFO     | fitting pss+swap vs Time
[2025-07-22 07:51:23] 2025-07-22 11:50:51,457 | INFO     | sum of square deviations: 226022842.5
[2025-07-22 07:51:23] 2025-07-22 11:50:51,457 | INFO     | sum of deviations: 3755295602.9999995
[2025-07-22 07:51:23] 2025-07-22 11:50:51,457 | INFO     | mean x: 1753182149.5
[2025-07-22 07:51:23] 2025-07-22 11:50:51,457 | INFO     | mean y: 2754828.888888889
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | -- intersect: -29125793172.959366
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | intersect: -29125793172.959366
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | chi2: 0.10822370121734605
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | -- intersect: -29125793172.959366
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | current memory leak: 16.61 B/s (using 90 data points, chi2=0.11)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,458 | INFO     | could have reported an average CPU frequency of 2136 MHz (7 samples)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | ..............................
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . Timing measurements:
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . get job = 0 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . initial setup = 2 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . payload setup = 9 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . stage-in = 0 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . payload execution = 5914 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . stage-out = 0 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | . log creation = 0 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,459 | INFO     | ..............................
[2025-07-22 07:51:23] 2025-07-22 11:50:51,543 | INFO     | 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | job summary report
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | --------------------------------------------------
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | PanDA job id: 6741739428
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | task id: 45697453
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | errors: (none)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | pilot state: finished 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | transexitcode: 0
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | exeerrorcode: 0
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | exeerrordiag: 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | exitcode: 0
[2025-07-22 07:51:23] 2025-07-22 11:50:51,545 | INFO     | exitmsg: OK
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | cpuconsumptiontime: 64310 s
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | nevents: 400
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | neventsw: 0
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | pid: 3784
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | pgrp: 3784
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | corecount: 12
[2025-07-22 07:51:23] 2025-07-22 11:50:51,546 | INFO     | event service: False
[2025-07-22 07:51:23] 2025-07-22 11:50:51,547 | INFO     | sizes: {0: 2397552, 5: 2397814, 11: 2397870, 5927: 2424650, 5929: 2433648, 5930: 2433704, 5936: 2434026}
[2025-07-22 07:51:23] 2025-07-22 11:50:51,547 | INFO     | --------------------------------------------------
[2025-07-22 07:51:23] 2025-07-22 11:50:51,547 | INFO     | 
[2025-07-22 07:51:23] 2025-07-22 11:50:51,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-22 07:51:23] 2025-07-22 11:50:51,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,572 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,572 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,572 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,575 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,575 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,575 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 07:51:23] 2025-07-22 11:50:51,575 | INFO     | job 6741739428 has completed (purged errors)
[2025-07-22 07:51:23] 2025-07-22 11:50:51,575 | INFO     | overall cleanup function is called
[2025-07-22 07:51:23] 2025-07-22 11:50:52,580 | INFO     | --- collectZombieJob: --- 10, [3784]
[2025-07-22 07:51:23] 2025-07-22 11:50:52,580 | INFO     | zombie collector waiting for pid 3784
[2025-07-22 07:51:23] 2025-07-22 11:50:52,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 07:51:23] 2025-07-22 11:50:52,580 | INFO     | collected zombie processes
[2025-07-22 07:51:23] 2025-07-22 11:50:52,580 | INFO     | will attempt to kill all subprocesses of pid=3784
[2025-07-22 07:51:23] 2025-07-22 11:50:52,670 | INFO     | process IDs to be killed: [3784] (in reverse order)
[2025-07-22 07:51:23] 2025-07-22 11:50:52,721 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 07:51:23] 2025-07-22 11:50:52,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 07:51:23] 2025-07-22 11:50:52,724 | INFO     | did not find any defunct processes belonging to 3784
[2025-07-22 07:51:23] 2025-07-22 11:50:52,726 | INFO     | did not find any defunct processes belonging to 3784
[2025-07-22 07:51:23] 2025-07-22 11:50:52,727 | INFO     | ready for new job
[2025-07-22 07:51:23] 2025-07-22 11:50:52,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 07:51:23] 2025-07-22 11:50:52,728 | INFO     | ***************************************
[2025-07-22 07:51:23] 2025-07-22 11:50:52,728 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 07:51:23] 2025-07-22 11:50:52,728 | INFO     | ***************************************
[2025-07-22 07:51:23] 2025-07-22 11:50:52,728 | INFO     | 
[2025-07-22 07:51:23] 2025-07-22 11:50:52,729 | INFO     | architecture information:
[2025-07-22 07:51:23] 2025-07-22 11:50:52,729 | INFO     | executing command: cat /etc/os-release
[2025-07-22 07:51:23] 2025-07-22 11:50:52,744 | INFO     | cat /etc/os-release:
[2025-07-22 07:51:23] NAME="CentOS Linux"
[2025-07-22 07:51:23] VERSION="7 (Core)"
[2025-07-22 07:51:23] ID="centos"
[2025-07-22 07:51:23] ID_LIKE="rhel fedora"
[2025-07-22 07:51:23] VERSION_ID="7"
[2025-07-22 07:51:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 07:51:23] ANSI_COLOR="0;31"
[2025-07-22 07:51:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 07:51:23] HOME_URL="https://www.centos.org/"
[2025-07-22 07:51:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 07:51:23] 
[2025-07-22 07:51:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 07:51:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 07:51:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 07:51:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 07:51:23] 
[2025-07-22 07:51:23] 2025-07-22 11:50:52,744 | INFO     | ***************************************
[2025-07-22 07:51:23] 2025-07-22 11:50:53,247 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-22 07:51:23] 2025-07-22 11:50:53,336 | INFO     | sufficient remaining disk space (29127344128 B)
[2025-07-22 07:51:23] 2025-07-22 11:50:53,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 07:51:23] 2025-07-22 11:50:53,337 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 07:51:23] 2025-07-22 11:50:53,337 | INFO     | update_server=False
[2025-07-22 07:51:23] 2025-07-22 11:50:53,337 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 07:51:23] 2025-07-22 11:50:53,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 07:51:23] 2025-07-22 11:50:53,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 07:51:23] 2025-07-22 11:50:53,613 | INFO     | all payload control threads have been joined
[2025-07-22 07:51:23] 2025-07-22 11:50:53,623 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-22 07:51:23] 2025-07-22 11:50:53,623 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-22 07:51:23] 2025-07-22 11:50:53,623 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 07:51:23] 2025-07-22 11:50:53,624 | INFO     | will abort loop
[2025-07-22 07:51:23] 2025-07-22 11:50:54,342 | INFO     | [job] retrieve thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,343 | INFO     | [job] queue monitor thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,381 | INFO     | all data control threads have been joined
[2025-07-22 07:51:23] 2025-07-22 11:50:54,552 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,618 | INFO     | [payload] control thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,627 | INFO     | [job] job monitor thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,631 | INFO     | [data] copytool_in thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:54,823 | INFO     | all job control threads have been joined
[2025-07-22 07:51:23] 2025-07-22 11:50:55,047 | INFO     | [payload] failed_post thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,193 | INFO     | [job] validate thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,325 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,342 | INFO     | [data] copytool_out thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,386 | INFO     | [data] control thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,461 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,636 | INFO     | [payload] validate_post thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:55,829 | INFO     | [job] control thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:50:56,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 07:51:23] 2025-07-22 11:51:00,794 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 07:51:23] 2025-07-22 11:51:02,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140571323950912)>', '<ExcThread(monitor, started 140571016406784)>']
[2025-07-22 07:51:23] 2025-07-22 11:51:07,820 | INFO     | all workflow threads have been joined
[2025-07-22 07:51:23] 2025-07-22 11:51:07,820 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 07:51:23] 2025-07-22 11:51:07,820 | INFO     | traces error code: 0
[2025-07-22 07:51:23] 2025-07-22 11:51:07,821 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 07:51:23] 2025-07-22 11:51:23,022 | INFO     | PID=29478 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-22 07:51:23] 2025-07-22 11:51:23,023 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 07:51:23] 2025-07-22 11:51:23,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 07:51:23] 2025-07-22 11:51:23,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 07:51:23] 2025-07-22 11:51:23,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 07:51:23] 2025-07-22 11:51:23,023 | INFO     | [monitor] control thread has ended
[2025-07-22 07:51:23] 2025-07-22 11:51:23,111 [wrapper] ==== pilot stdout END ====
[2025-07-22 07:51:23] 2025-07-22 11:51:23,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 07:51:23] 2025-07-22 11:51:23,119 [wrapper] pilotpid: 29478
[2025-07-22 07:51:23] 2025-07-22 11:51:23,123 [wrapper] Pilot exit status: 0
[2025-07-22 07:51:23] 2025-07-22 11:51:23,139 [wrapper] pandaids: 6741739428
[2025-07-22 07:51:23] 2025-07-22 11:51:23,179 [wrapper] cleanup supervisor_pilot  3409 29479
[2025-07-22 07:51:23] 2025-07-22 11:51:23,183 [wrapper] Test setup, not cleaning
[2025-07-22 07:51:23] 2025-07-22 11:51:23,188 [wrapper] apfmon messages muted
[2025-07-22 07:51:23] 2025-07-22 11:51:23,191 [wrapper] ==== wrapper stdout END ====
[2025-07-22 07:51:23] 2025-07-22 11:51:23,195 [wrapper] ==== wrapper stderr END ====
[2025-07-22 07:51:23]  *** Error codes and diagnostics ***
[2025-07-22 07:51:23]     "exeErrorCode": 0,
[2025-07-22 07:51:23]     "exeErrorDiag": "",
[2025-07-22 07:51:23]     "pilotErrorCode": 0,
[2025-07-22 07:51:23]     "pilotErrorDiag": "",
[2025-07-22 07:51:23]  *** Listing of results directory ***
[2025-07-22 07:51:23] total 565244
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas    530466 Jul 22 00:09 pilot3.tar.gz
[2025-07-22 07:51:23] -rwx------ 1 boincer umatlas     36292 Jul 22 00:31 runpilot2-wrapper.sh
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas      5112 Jul 22 00:31 queuedata.json
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas       100 Jul 22 06:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 07:51:23] -rwxr-xr-x 1 boincer umatlas      7986 Jul 22 06:11 run_atlas
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas       105 Jul 22 06:11 job.xml
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas 317017624 Jul 22 06:11 EVNT.45697451._000195.pool.root.1
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 22 06:11 start_atlas.sh
[2025-07-22 07:51:23] drwxrwx--x 2 boincer umatlas      4096 Jul 22 06:11 shared
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas    542907 Jul 22 06:11 input.tar.gz
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas         0 Jul 22 06:11 boinc_lockfile
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas      2634 Jul 22 06:11 pandaJob.out
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas    976638 Jul 22 06:11 agis_schedconf.cvmfs.json
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas   1593031 Jul 22 06:11 agis_ddmendpoints.agis.ALL.json
[2025-07-22 07:51:23] drwx------ 4 boincer umatlas      4096 Jul 22 06:11 pilot3
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas      5866 Jul 22 07:48 init_data.xml
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas 256056681 Jul 22 07:50 HITS.45697453._004867.pool.root.1
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas       529 Jul 22 07:50 boinc_task_state.xml
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas      1051 Jul 22 07:50 memory_monitor_summary.json
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas    379913 Jul 22 07:50 log.45697453._004867.job.log.tgz.1
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas      7851 Jul 22 07:50 heartbeat.json
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas      8192 Jul 22 07:51 boinc_mmap_file
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas        27 Jul 22 07:51 wrapper_checkpoint.txt
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas       745 Jul 22 07:51 pilotlog.txt
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas        95 Jul 22 07:51 pilot_heartbeat.json
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas    554406 Jul 22 07:51 log.45697453._004867.job.log.1
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas       357 Jul 22 07:51 output.list
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas       620 Jul 22 07:51 runtime_log
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas    952320 Jul 22 07:51 result.tar.gz
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas      8662 Jul 22 07:51 runtime_log.err
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas       659 Jul 22 07:51 GCPNDmBqJy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHOILDmAC1ZTn.diag
[2025-07-22 07:51:23] -rw-r--r-- 1 boincer umatlas     21811 Jul 22 07:51 stderr.txt
[2025-07-22 07:51:23] HITS file was successfully produced:
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas 256056681 Jul 22 07:50 shared/HITS.pool.root.1
[2025-07-22 07:51:23]  *** Contents of shared directory: ***
[2025-07-22 07:51:23] total 561128
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas 317017624 Jul 22 06:11 ATLAS.root_0
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 22 06:11 start_atlas.sh
[2025-07-22 07:51:23] -rw-r--r-- 2 boincer umatlas    542907 Jul 22 06:11 input.tar.gz
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas 256056681 Jul 22 07:50 HITS.pool.root.1
[2025-07-22 07:51:23] -rw------- 1 boincer umatlas    952320 Jul 22 07:51 result.tar.gz
07:51:24 (25877): run_atlas exited; CPU time 64268.356000
07:51:24 (25877): called boinc_finish(0)

</stderr_txt>
]]>

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