Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:51:44 (2638378): wrapper (7.7.26015): starting
11:51:44 (2638378): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:51:44] Arguments: --nthreads 3
[2025-07-22 11:51:44] Threads: 3
[2025-07-22 11:51:44] Checking for CVMFS
[2025-07-22 11:51:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:51:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:51:46] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:51:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:51:47] 2.9.2.0 1924301 5 31988 148616 2 5 8846228 36864001 0 130560 0 1 100.000 1 111 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:51:47] CVMFS is ok
[2025-07-22 11:51:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:51:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:51:47] Further information can be found at the LHC@home message board.
[2025-07-22 11:51:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:51:47] Checking for apptainer binary...
[2025-07-22 11:51:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:51:47] Running /usr/bin/apptainer --version
[2025-07-22 11:51:48] apptainer version 1.4.1-1.1
[2025-07-22 11:51:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:51:48] thA373
[2025-07-22 11:51:48] apptainer works
[2025-07-22 11:51:48] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:51:48] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:51:48] Starting ATLAS job with PandaID=6741739274
[2025-07-22 11:51:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:59:12]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:59:12]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:59:12]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:59:12]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:59:12]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:59:12] Traceback (most recent call last):
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:59:12]     self._target(**self.kwargs)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:59:12]     if _stage_out_new(job, args):
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:59:12]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:59:12]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:59:12]     list_work_dir(workdir)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:59:12]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:59:12]     process = subprocess.Popen(
[2025-07-22 11:59:12]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:59:12]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:59:12]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:59:12]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:59:12] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:59:12] 
[2025-07-22 11:59:12] None
[2025-07-22 11:59:12] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:59:12] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:59:12] 2025-07-22 09:56:28,804 | INFO     | monitor loop #46: job 0:6741739274 is in state 'failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:28,804 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:59:12] 2025-07-22 09:56:29,124 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:59:12] 2025-07-22 09:56:31,312 | INFO     | monitor loop #47: job 0:6741739274 is in state 'failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:31,312 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:59:12] 2025-07-22 09:56:33,818 | INFO     | monitor loop #48: job 0:6741739274 is in state 'failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:33,818 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:59:12] 2025-07-22 09:56:36,325 | INFO     | monitor loop #49: job 0:6741739274 is in state 'failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:36,325 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:59:12] 2025-07-22 09:56:38,376 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:59:12] 2025-07-22 09:56:38,376 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 11:59:12] 2025-07-22 09:56:38,376 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-22 11:59:12] 2025-07-22 09:56:38,376 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:59:12] 2025-07-22 09:56:38,376 | INFO     | aborting job 6741739274
[2025-07-22 11:59:12] 2025-07-22 09:56:38,612 | INFO     | all payload control threads have been joined
[2025-07-22 11:59:12] 2025-07-22 09:56:38,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:59:12] 2025-07-22 09:56:38,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:59:12] 2025-07-22 09:56:38,822 | INFO     | all job control threads have been joined
[2025-07-22 11:59:12] 2025-07-22 09:56:38,829 | INFO     | monitor loop #50: job 0:6741739274 is in state 'failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:38,829 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:59:12] 2025-07-22 09:56:38,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:59:12] 2025-07-22 09:56:38,829 | INFO     | will abort loop
[2025-07-22 11:59:12] 2025-07-22 09:56:38,940 | INFO     | all data control threads have been joined
[2025-07-22 11:59:12] 2025-07-22 09:56:39,442 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,616 | INFO     | [payload] control thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,748 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,809 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,830 | INFO     | [job] control thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,834 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,925 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:39,945 | INFO     | [data] control thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:40,124 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:40,258 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:40,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:59:12] 2025-07-22 09:56:40,559 | INFO     | [job] validate thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:40,808 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:44,352 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:59:12] 2025-07-22 09:56:59,478 | INFO     | job 6741739274 has state=failed
[2025-07-22 11:59:12] 2025-07-22 09:56:59,478 | INFO     | preparing for final server update for job 6741739274 in state='failed'
[2025-07-22 11:59:12] 2025-07-22 09:56:59,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:59:12] 2025-07-22 09:56:59,947 | INFO     | [monitor] control thread has ended
[2025-07-22 11:59:12] 2025-07-22 09:57:01,770 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:03,782 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:05,795 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:07,807 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:09,818 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:11,829 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:13,842 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:15,855 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:17,865 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:19,877 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:21,890 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:23,900 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:25,911 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:27,923 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:29,935 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:31,945 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:33,956 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:35,967 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:37,978 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:39,988 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:42,000 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:44,012 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:46,024 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:48,041 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:50,057 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:52,070 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:54,082 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:56,095 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:57:58,106 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:00,117 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:02,127 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:04,138 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:06,151 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:08,164 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:10,175 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:12,190 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:14,201 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:16,213 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:18,223 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:20,233 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:22,245 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:24,256 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:26,268 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:28,281 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:30,294 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:32,309 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:34,322 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:36,333 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:38,344 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:40,358 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:42,372 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:44,388 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:46,399 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:48,412 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:50,423 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:52,439 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:54,450 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:54,676 | INFO     | proceeding with final server update
[2025-07-22 11:59:12] 2025-07-22 09:58:54,676 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:59:12] 2025-07-22 09:58:54,676 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:59:12] 2025-07-22 09:58:54,676 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:59:12] 2025-07-22 09:58:54,676 | INFO     | job 6741739274 has state 'failed' - writing heartbeat
[2025-07-22 11:59:12] 2025-07-22 09:58:54,677 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:59:12] 2025-07-22 09:58:54,677 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:59:12]     self._target(**self.kwargs)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:59:12]     update_server(job, args)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:59:12]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:59:12]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:59:12]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:59:12]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:59:12] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f335b56bd40>)
[2025-07-22 11:59:12] Traceback (most recent call last):
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:59:12]     self._target(**self.kwargs)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:59:12]     update_server(job, args)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:59:12]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:59:12]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:59:12]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:59:12]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:59:12]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:59:12] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:59:12] 
[2025-07-22 11:59:12] None
[2025-07-22 11:59:12] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:59:12] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:59:12] 2025-07-22 09:58:56,464 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:58:58,478 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:59:00,494 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:59:02,507 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:59:04,520 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139858610612032)>', '<ExcThread(queue_monitor, started 139857674360576)>']
[2025-07-22 11:59:12] 2025-07-22 09:59:06,534 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139858610612032)>'])
[2025-07-22 11:59:12] 2025-07-22 09:59:11,559 | INFO     | all workflow threads have been joined
[2025-07-22 11:59:12] 2025-07-22 09:59:11,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:59:12] 2025-07-22 09:59:11,560 | INFO     | traces error code: 0
[2025-07-22 11:59:12] 2025-07-22 09:59:11,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  ==== pilot stdout END ====
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  ==== wrapper stdout RESUME ====
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  pilotpid: 2773320
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  Pilot exit status: 0
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  pandaids: 
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  No supervise_pilot CHILD process found
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  Test setup, not cleaning
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  apfmon messages muted
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:59:12]  ==== wrapper stdout END ====
[2025-07-22 11:59:12] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:59:12]  ==== wrapper stderr END ====
[2025-07-22 11:59:12]  *** Error codes and diagnostics ***
[2025-07-22 11:59:12]  *** Listing of results directory ***
[2025-07-22 11:59:12] total 315704
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc    530466 Jul 22 06:09 pilot3.tar.gz
[2025-07-22 11:59:12] -rwx------ 1 boinc boinc     36292 Jul 22 06:16 runpilot2-wrapper.sh
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc      5112 Jul 22 06:16 queuedata.json
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:59:12] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:51 run_atlas
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:51 job.xml
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc 319307762 Jul 22 11:51 EVNT.45697451._000189.pool.root.1
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc    542909 Jul 22 11:51 input.tar.gz
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:51 start_atlas.sh
[2025-07-22 11:59:12] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:51 shared
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:51 boinc_setup_complete
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:51 init_data.xml
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:51 boinc_lockfile
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc      2633 Jul 22 11:51 pandaJob.out
[2025-07-22 11:59:12] -rw------- 1 boinc boinc    976638 Jul 22 11:52 agis_schedconf.cvmfs.json
[2025-07-22 11:59:12] -rw------- 1 boinc boinc   1593031 Jul 22 11:52 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:59:12] drwx------ 4 boinc boinc      4096 Jul 22 11:53 pilot3
[2025-07-22 11:59:12] -rw------- 1 boinc boinc       736 Jul 22 11:55 heartbeat.json
[2025-07-22 11:59:12] -rw------- 1 boinc boinc        95 Jul 22 11:55 pilot_heartbeat.json
[2025-07-22 11:59:12] -rw------- 1 boinc boinc       944 Jul 22 11:56 memory_monitor_summary.json
[2025-07-22 11:59:12] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:56 PanDA_Pilot-6741739274
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:59 wrapper_checkpoint.txt
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:59 boinc_mmap_file
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:59 boinc_task_state.xml
[2025-07-22 11:59:12] -rw------- 1 boinc boinc     54937 Jul 22 11:59 pilotlog.txt
[2025-07-22 11:59:12] -rw------- 1 boinc boinc     72660 Jul 22 11:59 log.45697453._004713.job.log.1
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:59 runtime_log
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:59 runtime_log.err
[2025-07-22 11:59:12] -rw------- 1 boinc boinc       623 Jul 22 11:59 9PrMDmNbJy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzRuKDmcLUIym.diag
[2025-07-22 11:59:12] -rw-r--r-- 1 boinc boinc     27879 Jul 22 11:59 stderr.txt
[2025-07-22 11:59:12] No HITS result produced
[2025-07-22 11:59:12]  *** Contents of shared directory: ***
[2025-07-22 11:59:12] total 312376
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc 319307762 Jul 22 11:51 ATLAS.root_0
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc    542909 Jul 22 11:51 input.tar.gz
[2025-07-22 11:59:12] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:51 start_atlas.sh
11:59:14 (2638378): run_atlas exited; CPU time 18.693793
11:59:14 (2638378): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>9PrMDmNbJy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmzRuKDmcLUIym_1_r1916010635_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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