Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:59:37 (3676723): wrapper (7.7.26015): starting
11:59:37 (3676723): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:59:37] Arguments: --nthreads 3
[2025-07-22 11:59:37] Threads: 3
[2025-07-22 11:59:37] Checking for CVMFS
[2025-07-22 11:59:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:59:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:59:38] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:59:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:59:40] 2.9.2.0 3249777 3 30228 148616 0 5 8846228 36864001 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:59:40] CVMFS is ok
[2025-07-22 11:59:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:59:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:59:40] Further information can be found at the LHC@home message board.
[2025-07-22 11:59:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:59:40] Checking for apptainer binary...
[2025-07-22 11:59:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:59:40] Running /usr/bin/apptainer --version
[2025-07-22 11:59:40] apptainer version 1.4.1-1.1
[2025-07-22 11:59:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:59:40] thA373
[2025-07-22 11:59:40] apptainer works
[2025-07-22 11:59:40] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:59:40] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:59:41] Starting ATLAS job with PandaID=6741739275
[2025-07-22 11:59:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 12:07:05]  *** The last 200 lines of the pilot log: ***
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 12:07:05]     process = subprocess.Popen(
[2025-07-22 12:07:05]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 12:07:05]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 12:07:05]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 12:07:05]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 12:07:05] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f09a073ee00>)
[2025-07-22 12:07:05] Traceback (most recent call last):
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 12:07:05]     self._target(**self.kwargs)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 12:07:05]     if _stage_out_new(job, args):
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 12:07:05]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 12:07:05]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 12:07:05]     list_work_dir(workdir)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 12:07:05]     _, stdout, stderr = execute(cmd)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 12:07:05]     process = subprocess.Popen(
[2025-07-22 12:07:05]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 12:07:05]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 12:07:05]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 12:07:05]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 12:07:05] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 12:07:05] 
[2025-07-22 12:07:05] None
[2025-07-22 12:07:05] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 12:07:05] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 12:07:05] 2025-07-22 10:04:20,724 | INFO     | monitor loop #46: job 0:6741739275 is in state 'failed'
[2025-07-22 12:07:05] 2025-07-22 10:04:20,724 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 12:07:05] 2025-07-22 10:04:20,880 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 12:07:05] 2025-07-22 10:04:23,230 | INFO     | monitor loop #47: job 0:6741739275 is in state 'failed'
[2025-07-22 12:07:05] 2025-07-22 10:04:23,230 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 12:07:05] 2025-07-22 10:04:25,739 | INFO     | monitor loop #48: job 0:6741739275 is in state 'failed'
[2025-07-22 12:07:05] 2025-07-22 10:04:25,739 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 12:07:05] 2025-07-22 10:04:28,248 | INFO     | monitor loop #49: job 0:6741739275 is in state 'failed'
[2025-07-22 12:07:05] 2025-07-22 10:04:28,248 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 12:07:05] 2025-07-22 10:04:30,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 12:07:05] 2025-07-22 10:04:30,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 12:07:05] 2025-07-22 10:04:30,179 | INFO     | aborting loop
[2025-07-22 12:07:05] 2025-07-22 10:04:30,715 | INFO     | all data control threads have been joined
[2025-07-22 12:07:05] 2025-07-22 10:04:30,774 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 12:07:05] 2025-07-22 10:04:30,774 | INFO     | aborting job 6741739275
[2025-07-22 12:07:05] 2025-07-22 10:04:31,192 | INFO     | [job] job monitor thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:31,255 | INFO     | all job control threads have been joined
[2025-07-22 12:07:05] 2025-07-22 10:04:31,431 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 12:07:05] 2025-07-22 10:04:31,431 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 12:07:05] 2025-07-22 10:04:31,460 | INFO     | all payload control threads have been joined
[2025-07-22 12:07:05] 2025-07-22 10:04:31,716 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:31,716 | INFO     | [data] copytool_in thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:31,716 | INFO     | [job] validate thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:31,720 | INFO     | [data] control thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,136 | INFO     | [payload] failed_post thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 12:07:05] 2025-07-22 10:04:32,221 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 12:07:05] 2025-07-22 10:04:32,262 | INFO     | [job] control thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,405 | INFO     | [payload] validate_post thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,434 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,436 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,436 | INFO     | [job] retrieve thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:32,468 | INFO     | [payload] control thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:34,203 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:35,439 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 12:07:05] 2025-07-22 10:04:53,321 | INFO     | job 6741739275 has state=failed
[2025-07-22 12:07:05] 2025-07-22 10:04:53,321 | INFO     | preparing for final server update for job 6741739275 in state='failed'
[2025-07-22 12:07:05] 2025-07-22 10:04:53,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 12:07:05] 2025-07-22 10:04:53,572 | INFO     | [monitor] control thread has ended
[2025-07-22 12:07:05] 2025-07-22 10:04:55,246 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:04:57,259 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:04:59,273 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:01,288 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:03,302 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:05,312 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:07,332 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:09,354 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:11,369 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:13,381 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:15,392 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:17,406 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:19,424 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:21,436 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:23,447 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:25,460 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:27,470 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:29,481 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:31,492 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:33,505 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:35,518 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:37,530 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:39,545 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:41,558 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:43,571 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:45,583 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:47,596 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:49,609 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:51,620 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:53,636 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:55,646 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:57,661 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:05:59,673 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:01,686 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:03,699 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:05,710 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:07,723 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:09,733 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:11,744 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:13,757 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:15,769 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:17,780 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:19,790 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:21,803 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:23,816 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:25,827 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:27,840 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:29,851 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:31,863 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:33,873 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:35,887 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:37,903 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:39,916 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:41,931 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:43,942 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:45,953 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:47,966 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:48,549 | INFO     | proceeding with final server update
[2025-07-22 12:07:05] 2025-07-22 10:06:48,549 | INFO     | this job has now completed (state=failed)
[2025-07-22 12:07:05] 2025-07-22 10:06:48,549 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 12:07:05] 2025-07-22 10:06:48,549 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 12:07:05] 2025-07-22 10:06:48,549 | INFO     | job 6741739275 has state 'failed' - writing heartbeat
[2025-07-22 12:07:05] 2025-07-22 10:06:48,550 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 12:07:05] 2025-07-22 10:06:48,550 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 12:07:05]     self._target(**self.kwargs)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 12:07:05]     update_server(job, args)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 12:07:05]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 12:07:05]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 12:07:05]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 12:07:05]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 12:07:05] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f09a06c2e80>)
[2025-07-22 12:07:05] Traceback (most recent call last):
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 12:07:05]     self._target(**self.kwargs)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 12:07:05]     update_server(job, args)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 12:07:05]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 12:07:05]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 12:07:05]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 12:07:05]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 12:07:05]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 12:07:05] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 12:07:05] 
[2025-07-22 12:07:05] None
[2025-07-22 12:07:05] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 12:07:05] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 12:07:05] 2025-07-22 10:06:49,983 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:51,997 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:54,011 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:56,024 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:06:58,034 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139679413425984)>', '<ExcThread(queue_monitor, started 139679124911872)>']
[2025-07-22 12:07:05] 2025-07-22 10:07:00,049 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139679413425984)>'])
[2025-07-22 12:07:05] 2025-07-22 10:07:05,074 | INFO     | all workflow threads have been joined
[2025-07-22 12:07:05] 2025-07-22 10:07:05,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 12:07:05] 2025-07-22 10:07:05,074 | INFO     | traces error code: 0
[2025-07-22 12:07:05] 2025-07-22 10:07:05,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  ==== pilot stdout END ====
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  ==== wrapper stdout RESUME ====
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  pilotpid: 3817038
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  Pilot exit status: 0
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  pandaids: 
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  No supervise_pilot CHILD process found
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  Test setup, not cleaning
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  apfmon messages muted
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 12:07:05]  ==== wrapper stdout END ====
[2025-07-22 12:07:05] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 12:07:05]  ==== wrapper stderr END ====
[2025-07-22 12:07:05]  *** Error codes and diagnostics ***
[2025-07-22 12:07:05]  *** Listing of results directory ***
[2025-07-22 12:07:05] total 315700
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc    530466 Jul 22 06:09 pilot3.tar.gz
[2025-07-22 12:07:05] -rwx------ 1 boinc boinc     36292 Jul 22 06:16 runpilot2-wrapper.sh
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc      5112 Jul 22 06:16 queuedata.json
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 12:07:05] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:59 run_atlas
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:59 job.xml
[2025-07-22 12:07:05] -rw-r--r-- 2 boinc boinc 319307762 Jul 22 11:59 EVNT.45697451._000189.pool.root.1
[2025-07-22 12:07:05] -rw-r--r-- 2 boinc boinc    542911 Jul 22 11:59 input.tar.gz
[2025-07-22 12:07:05] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:59 start_atlas.sh
[2025-07-22 12:07:05] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:59 shared
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:59 boinc_setup_complete
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:59 init_data.xml
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:59 boinc_lockfile
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc      2633 Jul 22 11:59 pandaJob.out
[2025-07-22 12:07:05] -rw------- 1 boinc boinc    976638 Jul 22 12:00 agis_schedconf.cvmfs.json
[2025-07-22 12:07:05] -rw------- 1 boinc boinc   1593031 Jul 22 12:00 agis_ddmendpoints.agis.ALL.json
[2025-07-22 12:07:05] drwx------ 4 boinc boinc      4096 Jul 22 12:00 pilot3
[2025-07-22 12:07:05] -rw------- 1 boinc boinc       736 Jul 22 12:03 heartbeat.json
[2025-07-22 12:07:05] -rw------- 1 boinc boinc        95 Jul 22 12:03 pilot_heartbeat.json
[2025-07-22 12:07:05] -rw------- 1 boinc boinc       936 Jul 22 12:04 memory_monitor_summary.json
[2025-07-22 12:07:05] drwxrwx--- 2 boinc boinc      4096 Jul 22 12:04 PanDA_Pilot-6741739275
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc      8192 Jul 22 12:06 boinc_mmap_file
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc        22 Jul 22 12:06 wrapper_checkpoint.txt
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc       523 Jul 22 12:06 boinc_task_state.xml
[2025-07-22 12:07:05] -rw------- 1 boinc boinc     55410 Jul 22 12:07 pilotlog.txt
[2025-07-22 12:07:05] -rw------- 1 boinc boinc     73133 Jul 22 12:07 log.45697453._004714.job.log.1
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc       428 Jul 22 12:07 runtime_log
[2025-07-22 12:07:05] -rw------- 1 boinc boinc       623 Jul 22 12:07 xwsMDmNbJy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0RuKDmckrkHn.diag
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc      8610 Jul 22 12:07 runtime_log.err
[2025-07-22 12:07:05] -rw-r--r-- 1 boinc boinc     27828 Jul 22 12:07 stderr.txt
[2025-07-22 12:07:06] No HITS result produced
[2025-07-22 12:07:06]  *** Contents of shared directory: ***
[2025-07-22 12:07:06] total 312372
[2025-07-22 12:07:06] -rw-r--r-- 2 boinc boinc 319307762 Jul 22 11:59 ATLAS.root_0
[2025-07-22 12:07:06] -rw-r--r-- 2 boinc boinc    542911 Jul 22 11:59 input.tar.gz
[2025-07-22 12:07:06] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:59 start_atlas.sh
12:07:07 (3676723): run_atlas exited; CPU time 18.679664
12:07:07 (3676723): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>xwsMDmNbJy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm0RuKDmckrkHn_1_r854592115_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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