Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:15:06 (2069208): wrapper (7.7.26015): starting
11:15:06 (2069208): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:15:06] Arguments: --nthreads 3
[2025-07-22 11:15:06] Threads: 3
[2025-07-22 11:15:06] Checking for CVMFS
[2025-07-22 11:15:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:15:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:15:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:15:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:15:09] 2.9.2.0 1275389 6 32060 148616 3 1 8840432 36864000 0 130560 0 1 85.714 1293 5549 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:15:09] CVMFS is ok
[2025-07-22 11:15:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:15:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:15:10] Further information can be found at the LHC@home message board.
[2025-07-22 11:15:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:15:10] Checking for apptainer binary...
[2025-07-22 11:15:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:15:10] Running /usr/bin/apptainer --version
[2025-07-22 11:15:10] apptainer version 1.4.1-1.1
[2025-07-22 11:15:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:15:10] thA373
[2025-07-22 11:15:10] apptainer works
[2025-07-22 11:15:10] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:15:10] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:15:11] Starting ATLAS job with PandaID=6741714326
[2025-07-22 11:15:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:22:07]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:22:07]     list_work_dir(workdir)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:22:07]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:22:07]     process = subprocess.Popen(
[2025-07-22 11:22:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:22:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:22:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:22:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:22:07] Traceback (most recent call last):
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:22:07]     self._target(**self.kwargs)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:22:07]     if _stage_out_new(job, args):
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:22:07]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:22:07]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:22:07]     list_work_dir(workdir)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:22:07]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:22:07]     process = subprocess.Popen(
[2025-07-22 11:22:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:22:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:22:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:22:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:22:07] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:22:07] 
[2025-07-22 11:22:07] None
[2025-07-22 11:22:07] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:22:07] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:22:07] 2025-07-22 09:19:45,652 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:22:07] 2025-07-22 09:19:45,729 | INFO     | monitor loop #46: job 0:6741714326 is in state 'failed'
[2025-07-22 11:22:07] 2025-07-22 09:19:45,729 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:22:07] 2025-07-22 09:19:48,237 | INFO     | monitor loop #47: job 0:6741714326 is in state 'failed'
[2025-07-22 11:22:07] 2025-07-22 09:19:48,237 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:22:07] 2025-07-22 09:19:50,744 | INFO     | monitor loop #48: job 0:6741714326 is in state 'failed'
[2025-07-22 11:22:07] 2025-07-22 09:19:50,744 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:22:07] 2025-07-22 09:19:53,251 | INFO     | monitor loop #49: job 0:6741714326 is in state 'failed'
[2025-07-22 11:22:07] 2025-07-22 09:19:53,251 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:22:07] 2025-07-22 09:19:54,601 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:22:07] 2025-07-22 09:19:54,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:22:07] 2025-07-22 09:19:54,603 | INFO     | aborting loop
[2025-07-22 11:22:07] 2025-07-22 09:19:55,165 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:22:07] 2025-07-22 09:19:55,165 | INFO     | aborting job 6741714326
[2025-07-22 11:22:07] 2025-07-22 09:19:55,430 | INFO     | all data control threads have been joined
[2025-07-22 11:22:07] 2025-07-22 09:19:55,619 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:55,619 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:55,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:22:07] 2025-07-22 09:19:55,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:22:07] 2025-07-22 09:19:55,646 | INFO     | job 6741714326 has state=failed
[2025-07-22 11:22:07] 2025-07-22 09:19:55,646 | INFO     | preparing for final server update for job 6741714326 in state='failed'
[2025-07-22 11:22:07] 2025-07-22 09:19:55,767 | INFO     | all job control threads have been joined
[2025-07-22 11:22:07] 2025-07-22 09:19:56,101 | INFO     | all payload control threads have been joined
[2025-07-22 11:22:07] 2025-07-22 09:19:56,113 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,135 | INFO     | [job] validate thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,135 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,412 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,438 | INFO     | [data] control thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,495 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:22:07] 2025-07-22 09:19:56,653 | INFO     | [monitor] control thread has ended
[2025-07-22 11:22:07] 2025-07-22 09:19:56,773 | INFO     | [job] control thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,878 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:56,922 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:57,108 | INFO     | [payload] control thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:58,629 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:22:07] 2025-07-22 09:19:58,673 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:00,683 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:02,693 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:04,703 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:06,713 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:08,724 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:10,736 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:12,747 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:14,757 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:16,769 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:18,782 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:20,795 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:22,805 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:24,817 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:26,827 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:28,838 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:30,851 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:32,865 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:34,877 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:36,888 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:38,898 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:40,909 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:42,920 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:44,931 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:46,941 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:48,951 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:50,961 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:52,974 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:54,987 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:56,998 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:20:59,008 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:01,019 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:03,029 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:05,042 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:07,054 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:09,066 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:11,077 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:13,091 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:15,102 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:17,115 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:19,129 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:21,141 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:23,152 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:25,164 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:27,174 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:29,185 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:31,203 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:33,216 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:35,231 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:37,244 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:39,256 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:41,267 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:43,282 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:45,293 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:47,305 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:49,319 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:50,854 | INFO     | proceeding with final server update
[2025-07-22 11:22:07] 2025-07-22 09:21:50,854 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:22:07] 2025-07-22 09:21:50,854 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:22:07] 2025-07-22 09:21:50,855 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:22:07] 2025-07-22 09:21:50,855 | INFO     | job 6741714326 has state 'failed' - writing heartbeat
[2025-07-22 11:22:07] 2025-07-22 09:21:50,855 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:22:07] 2025-07-22 09:21:50,855 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:22:07]     self._target(**self.kwargs)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:22:07]     update_server(job, args)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:22:07]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:22:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:22:07]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:22:07]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:22:07] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7fe0303ecf40>)
[2025-07-22 11:22:07] Traceback (most recent call last):
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:22:07]     self._target(**self.kwargs)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:22:07]     update_server(job, args)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:22:07]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:22:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:22:07]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:22:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:22:07]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:22:07] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:22:07] 
[2025-07-22 11:22:07] None
[2025-07-22 11:22:07] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:22:07] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:22:07] 2025-07-22 09:21:51,331 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:53,341 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:55,353 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:57,363 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:21:59,374 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140600920590144)>', '<ExcThread(queue_monitor, started 140600284264192)>']
[2025-07-22 11:22:07] 2025-07-22 09:22:01,386 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140600920590144)>'])
[2025-07-22 11:22:07] 2025-07-22 09:22:06,411 | INFO     | all workflow threads have been joined
[2025-07-22 11:22:07] 2025-07-22 09:22:06,411 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:22:07] 2025-07-22 09:22:06,411 | INFO     | traces error code: 0
[2025-07-22 11:22:07] 2025-07-22 09:22:06,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  ==== pilot stdout END ====
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  ==== wrapper stdout RESUME ====
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  pilotpid: 2200276
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  Pilot exit status: 0
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  pandaids: 
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  No supervise_pilot CHILD process found
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  Test setup, not cleaning
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  apfmon messages muted
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:22:07]  ==== wrapper stdout END ====
[2025-07-22 11:22:07] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:22:07]  ==== wrapper stderr END ====
[2025-07-22 11:22:07]  *** Error codes and diagnostics ***
[2025-07-22 11:22:07]  *** Listing of results directory ***
[2025-07-22 11:22:07] total 311256
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc    530466 Jul 22 05:26 pilot3.tar.gz
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:36 queuedata.json
[2025-07-22 11:22:07] -rwx------ 1 boinc boinc     36292 Jul 22 05:37 runpilot2-wrapper.sh
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:22:07] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:15 run_atlas
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:15 job.xml
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc 314756843 Jul 22 11:15 EVNT.45697451._000161.pool.root.1
[2025-07-22 11:22:07] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:15 shared
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc    542905 Jul 22 11:15 input.tar.gz
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:15 start_atlas.sh
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:15 boinc_setup_complete
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:15 init_data.xml
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:15 boinc_lockfile
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc      2634 Jul 22 11:15 pandaJob.out
[2025-07-22 11:22:07] -rw------- 1 boinc boinc    976638 Jul 22 11:16 agis_schedconf.cvmfs.json
[2025-07-22 11:22:07] -rw------- 1 boinc boinc   1593031 Jul 22 11:16 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:22:07] drwx------ 4 boinc boinc      4096 Jul 22 11:16 pilot3
[2025-07-22 11:22:07] -rw------- 1 boinc boinc       736 Jul 22 11:19 heartbeat.json
[2025-07-22 11:22:07] -rw------- 1 boinc boinc        95 Jul 22 11:19 pilot_heartbeat.json
[2025-07-22 11:22:07] -rw------- 1 boinc boinc       950 Jul 22 11:19 memory_monitor_summary.json
[2025-07-22 11:22:07] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:19 PanDA_Pilot-6741714326
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:19 boinc_task_state.xml
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:21 boinc_mmap_file
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:21 wrapper_checkpoint.txt
[2025-07-22 11:22:07] -rw------- 1 boinc boinc     54111 Jul 22 11:22 pilotlog.txt
[2025-07-22 11:22:07] -rw------- 1 boinc boinc     71834 Jul 22 11:22 log.45697453._004011.job.log.1
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:22 runtime_log
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:22 runtime_log.err
[2025-07-22 11:22:07] -rw------- 1 boinc boinc       623 Jul 22 11:22 pdVMDmhzIy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOPuKDmkw6Mwn.diag
[2025-07-22 11:22:07] -rw-r--r-- 1 boinc boinc     27534 Jul 22 11:22 stderr.txt
[2025-07-22 11:22:07] No HITS result produced
[2025-07-22 11:22:07]  *** Contents of shared directory: ***
[2025-07-22 11:22:07] total 307928
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc 314756843 Jul 22 11:15 ATLAS.root_0
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc    542905 Jul 22 11:15 input.tar.gz
[2025-07-22 11:22:07] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:15 start_atlas.sh
11:22:09 (2069208): run_atlas exited; CPU time 18.757434
11:22:09 (2069208): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>pdVMDmhzIy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmOPuKDmkw6Mwn_1_r120897956_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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