Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:33:34 (263714): wrapper (7.7.26015): starting
11:33:34 (263714): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:33:34] Arguments: --nthreads 3
[2025-07-22 11:33:34] Threads: 3
[2025-07-22 11:33:34] Checking for CVMFS
[2025-07-22 11:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:33:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:33:36] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:33:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:33:37] 2.9.2.0 3609876 6 32164 148616 1 5 8846209 36864001 0 130560 0 1 100.000 1 3 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:33:37] CVMFS is ok
[2025-07-22 11:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:33:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:33:37] Further information can be found at the LHC@home message board.
[2025-07-22 11:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:33:37] Checking for apptainer binary...
[2025-07-22 11:33:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:33:37] Running /usr/bin/apptainer --version
[2025-07-22 11:33:37] apptainer version 1.4.1-1.1
[2025-07-22 11:33:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:33:38] thA373
[2025-07-22 11:33:38] apptainer works
[2025-07-22 11:33:38] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:33:38] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:33:38] Starting ATLAS job with PandaID=6741714151
[2025-07-22 11:33:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:41:01]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:41:01]     process = subprocess.Popen(
[2025-07-22 11:41:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:41:01]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:41:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:41:01]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:41:01] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7ffbe659c2c0>)
[2025-07-22 11:41:01] Traceback (most recent call last):
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:41:01]     self._target(**self.kwargs)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:41:01]     if _stage_out_new(job, args):
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:41:01]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:41:01]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:41:01]     list_work_dir(workdir)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:41:01]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:41:01]     process = subprocess.Popen(
[2025-07-22 11:41:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:41:01]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:41:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:41:01]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:41:01] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:41:01] 
[2025-07-22 11:41:01] None
[2025-07-22 11:41:01] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:41:01] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:41:01] 2025-07-22 09:38:18,306 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:41:01] 2025-07-22 09:38:20,027 | INFO     | monitor loop #48: job 0:6741714151 is in state 'failed'
[2025-07-22 11:41:01] 2025-07-22 09:38:20,027 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:41:01] 2025-07-22 09:38:22,536 | INFO     | monitor loop #49: job 0:6741714151 is in state 'failed'
[2025-07-22 11:41:01] 2025-07-22 09:38:22,536 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:41:01] 2025-07-22 09:38:25,045 | INFO     | monitor loop #50: job 0:6741714151 is in state 'failed'
[2025-07-22 11:41:01] 2025-07-22 09:38:25,045 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:41:01] 2025-07-22 09:38:27,549 | INFO     | monitor loop #51: job 0:6741714151 is in state 'failed'
[2025-07-22 11:41:01] 2025-07-22 09:38:27,549 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:41:01] 2025-07-22 09:38:27,842 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:41:01] 2025-07-22 09:38:27,842 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 11:41:01] 2025-07-22 09:38:27,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:41:01] 2025-07-22 09:38:27,842 | INFO     | will abort loop
[2025-07-22 11:41:01] 2025-07-22 09:38:27,843 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-22 11:41:01] 2025-07-22 09:38:27,843 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:41:01] 2025-07-22 09:38:27,843 | INFO     | aborting job 6741714151
[2025-07-22 11:41:01] 2025-07-22 09:38:27,983 | INFO     | all payload control threads have been joined
[2025-07-22 11:41:01] 2025-07-22 09:38:28,070 | INFO     | all job control threads have been joined
[2025-07-22 11:41:01] 2025-07-22 09:38:28,132 | INFO     | all data control threads have been joined
[2025-07-22 11:41:01] 2025-07-22 09:38:28,433 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:41:01] 2025-07-22 09:38:28,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:41:01] 2025-07-22 09:38:28,850 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:28,991 | INFO     | [payload] control thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,076 | INFO     | [job] control thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,116 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,139 | INFO     | [data] control thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,253 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,341 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:41:01] 2025-07-22 09:38:29,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,753 | INFO     | [job] validate thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:29,988 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:30,274 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:30,296 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:31,711 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:33,398 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:41:01] 2025-07-22 09:38:48,943 | INFO     | job 6741714151 has state=failed
[2025-07-22 11:41:01] 2025-07-22 09:38:48,943 | INFO     | preparing for final server update for job 6741714151 in state='failed'
[2025-07-22 11:41:01] 2025-07-22 09:38:49,562 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:41:01] 2025-07-22 09:38:49,562 | INFO     | [monitor] control thread has ended
[2025-07-22 11:41:01] 2025-07-22 09:38:50,835 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:38:52,845 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:38:54,859 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:38:56,872 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:38:58,885 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:00,898 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:02,913 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:04,925 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:06,937 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:08,950 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:10,964 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:12,978 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:14,990 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:17,004 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:19,018 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:21,029 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:23,041 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:25,052 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:27,066 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:29,077 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:31,089 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:33,099 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:35,112 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:37,124 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:39,135 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:41,145 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:43,160 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:45,171 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:47,182 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:49,194 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:51,209 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:53,224 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:55,236 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:57,246 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:39:59,259 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:01,272 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:03,289 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:05,301 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:07,311 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:09,323 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:11,339 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:13,351 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:15,363 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:17,376 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:19,388 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:21,402 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:23,414 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:25,425 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:27,438 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:29,451 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:31,464 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:33,476 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:35,488 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:37,500 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:39,510 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:41,524 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:43,536 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:44,150 | INFO     | proceeding with final server update
[2025-07-22 11:41:01] 2025-07-22 09:40:44,150 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:41:01] 2025-07-22 09:40:44,150 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:41:01] 2025-07-22 09:40:44,150 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:41:01] 2025-07-22 09:40:44,150 | INFO     | job 6741714151 has state 'failed' - writing heartbeat
[2025-07-22 11:41:01] 2025-07-22 09:40:44,151 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:41:01] 2025-07-22 09:40:44,151 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:41:01]     self._target(**self.kwargs)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:41:01]     update_server(job, args)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:41:01]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:41:01]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:41:01]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:41:01]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:41:01] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7ffbe81ab780>)
[2025-07-22 11:41:01] Traceback (most recent call last):
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:41:01]     self._target(**self.kwargs)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:41:01]     update_server(job, args)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:41:01]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:41:01]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:41:01]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:41:01]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:41:01]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:41:01] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:41:01] 
[2025-07-22 11:41:01] None
[2025-07-22 11:41:01] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:41:01] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:41:01] 2025-07-22 09:40:45,549 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:47,563 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:49,573 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:51,585 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:53,600 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140719964899136)>', '<ExcThread(queue_monitor, started 140719486392064)>']
[2025-07-22 11:41:01] 2025-07-22 09:40:55,611 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140719964899136)>'])
[2025-07-22 11:41:01] 2025-07-22 09:41:00,637 | INFO     | all workflow threads have been joined
[2025-07-22 11:41:01] 2025-07-22 09:41:00,637 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:41:01] 2025-07-22 09:41:00,637 | INFO     | traces error code: 0
[2025-07-22 11:41:01] 2025-07-22 09:41:00,637 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  ==== pilot stdout END ====
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  ==== wrapper stdout RESUME ====
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  pilotpid: 399907
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  Pilot exit status: 0
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  pandaids: 
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  No supervise_pilot CHILD process found
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  Test setup, not cleaning
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  apfmon messages muted
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:41:01]  ==== wrapper stdout END ====
[2025-07-22 11:41:01] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:41:01]  ==== wrapper stderr END ====
[2025-07-22 11:41:01]  *** Error codes and diagnostics ***
[2025-07-22 11:41:01]  *** Listing of results directory ***
[2025-07-22 11:41:01] total 314380
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc    530466 Jul 22 05:26 pilot3.tar.gz
[2025-07-22 11:41:01] -rwx------ 1 boinc boinc     36292 Jul 22 05:28 runpilot2-wrapper.sh
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:28 queuedata.json
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:41:01] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:33 run_atlas
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:33 job.xml
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc 317950359 Jul 22 11:33 EVNT.45697451._000157.pool.root.1
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc    542901 Jul 22 11:33 input.tar.gz
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:33 start_atlas.sh
[2025-07-22 11:41:01] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:33 shared
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:33 boinc_setup_complete
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:33 init_data.xml
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:33 boinc_lockfile
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc      2634 Jul 22 11:33 pandaJob.out
[2025-07-22 11:41:01] -rw------- 1 boinc boinc    976638 Jul 22 11:34 agis_schedconf.cvmfs.json
[2025-07-22 11:41:01] -rw------- 1 boinc boinc   1593031 Jul 22 11:34 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:41:01] drwx------ 4 boinc boinc      4096 Jul 22 11:34 pilot3
[2025-07-22 11:41:01] -rw------- 1 boinc boinc       736 Jul 22 11:37 heartbeat.json
[2025-07-22 11:41:01] -rw------- 1 boinc boinc        95 Jul 22 11:37 pilot_heartbeat.json
[2025-07-22 11:41:01] -rw------- 1 boinc boinc       944 Jul 22 11:38 memory_monitor_summary.json
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:38 boinc_task_state.xml
[2025-07-22 11:41:01] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:38 PanDA_Pilot-6741714151
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:40 wrapper_checkpoint.txt
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:40 boinc_mmap_file
[2025-07-22 11:41:01] -rw------- 1 boinc boinc     55821 Jul 22 11:41 pilotlog.txt
[2025-07-22 11:41:01] -rw------- 1 boinc boinc     73541 Jul 22 11:41 log.45697453._003918.job.log.1
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:41 runtime_log
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:41 runtime_log.err
[2025-07-22 11:41:01] -rw------- 1 boinc boinc       623 Jul 22 11:41 bBQODmYrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVCILDm5SbkIo.diag
[2025-07-22 11:41:01] -rw-r--r-- 1 boinc boinc     27863 Jul 22 11:41 stderr.txt
[2025-07-22 11:41:01] No HITS result produced
[2025-07-22 11:41:01]  *** Contents of shared directory: ***
[2025-07-22 11:41:01] total 311052
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc 317950359 Jul 22 11:33 ATLAS.root_0
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc    542901 Jul 22 11:33 input.tar.gz
[2025-07-22 11:41:01] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:33 start_atlas.sh
11:41:03 (263714): run_atlas exited; CPU time 18.562004
11:41:03 (263714): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>bBQODmYrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVCILDm5SbkIo_1_r14152296_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

©2025 CERN