Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:41:05 (1263789): wrapper (7.7.26015): starting
11:41:05 (1263789): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:41:06] Arguments: --nthreads 3
[2025-07-22 11:41:06] Threads: 3
[2025-07-22 11:41:06] Checking for CVMFS
[2025-07-22 11:41:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:41:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:41:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:41:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:41:29] 2.9.2.0 867103 3 30172 148616 0 5 8846209 36864001 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:41:29] CVMFS is ok
[2025-07-22 11:41:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:41:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:41:29] Further information can be found at the LHC@home message board.
[2025-07-22 11:41:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:41:29] Checking for apptainer binary...
[2025-07-22 11:41:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:41:29] Running /usr/bin/apptainer --version
[2025-07-22 11:41:29] apptainer version 1.4.1-1.1
[2025-07-22 11:41:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:41:29] thA373
[2025-07-22 11:41:29] apptainer works
[2025-07-22 11:41:30] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:41:30] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:41:30] Starting ATLAS job with PandaID=6741714154
[2025-07-22 11:41:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:48:56]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:48:56]     process = subprocess.Popen(
[2025-07-22 11:48:56]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:48:56]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:48:56]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:48:56]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:48:56] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f1c10294cc0>)
[2025-07-22 11:48:56] Traceback (most recent call last):
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:48:56]     self._target(**self.kwargs)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:48:56]     if _stage_out_new(job, args):
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:48:56]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:48:56]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:48:56]     list_work_dir(workdir)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:48:56]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:48:56]     process = subprocess.Popen(
[2025-07-22 11:48:56]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:48:56]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:48:56]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:48:56]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:48:56] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:48:56] 
[2025-07-22 11:48:56] None
[2025-07-22 11:48:56] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:48:56] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:48:56] 2025-07-22 09:46:13,697 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:48:56] 2025-07-22 09:46:14,593 | INFO     | monitor loop #48: job 0:6741714154 is in state 'failed'
[2025-07-22 11:48:56] 2025-07-22 09:46:14,593 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:48:56] 2025-07-22 09:46:17,099 | INFO     | monitor loop #49: job 0:6741714154 is in state 'failed'
[2025-07-22 11:48:56] 2025-07-22 09:46:17,099 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:48:56] 2025-07-22 09:46:19,604 | INFO     | monitor loop #50: job 0:6741714154 is in state 'failed'
[2025-07-22 11:48:56] 2025-07-22 09:46:19,604 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:48:56] 2025-07-22 09:46:22,110 | INFO     | monitor loop #51: job 0:6741714154 is in state 'failed'
[2025-07-22 11:48:56] 2025-07-22 09:46:22,110 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:48:56] 2025-07-22 09:46:23,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:48:56] 2025-07-22 09:46:23,362 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 11:48:56] 2025-07-22 09:46:23,362 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:48:56] 2025-07-22 09:46:23,362 | INFO     | aborting loop
[2025-07-22 11:48:56] 2025-07-22 09:46:23,445 | INFO     | all job control threads have been joined
[2025-07-22 11:48:56] 2025-07-22 09:46:23,523 | INFO     | all data control threads have been joined
[2025-07-22 11:48:56] 2025-07-22 09:46:24,212 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:48:56] 2025-07-22 09:46:24,212 | INFO     | aborting job 6741714154
[2025-07-22 11:48:56] 2025-07-22 09:46:24,255 | INFO     | all payload control threads have been joined
[2025-07-22 11:48:56] 2025-07-22 09:46:24,388 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,453 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,454 | INFO     | [job] control thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,454 | INFO     | [job] validate thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,532 | INFO     | [data] control thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:48:56] 2025-07-22 09:46:24,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:48:56] 2025-07-22 09:46:24,851 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,851 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:24,851 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:25,211 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:25,260 | INFO     | [payload] control thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:25,460 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:25,537 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:25,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:48:56] 2025-07-22 09:46:25,844 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:29,749 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:48:56] 2025-07-22 09:46:44,466 | INFO     | job 6741714154 has state=failed
[2025-07-22 11:48:56] 2025-07-22 09:46:44,466 | INFO     | preparing for final server update for job 6741714154 in state='failed'
[2025-07-22 11:48:56] 2025-07-22 09:46:44,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:48:56] 2025-07-22 09:46:44,885 | INFO     | [monitor] control thread has ended
[2025-07-22 11:48:56] 2025-07-22 09:46:45,255 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:47,268 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:49,281 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:51,292 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:53,305 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:55,315 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:57,327 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:46:59,339 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:01,349 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:03,360 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:05,375 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:07,390 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:09,400 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:11,412 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:13,422 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:15,432 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:17,443 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:19,454 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:21,468 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:23,478 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:25,491 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:27,506 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:29,518 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:31,531 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:33,541 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:35,552 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:37,565 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:39,581 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:41,592 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:43,604 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:45,619 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:47,635 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:49,647 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:51,657 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:53,671 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:55,683 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:57,696 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:47:59,706 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:01,717 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:03,730 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:05,741 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:07,754 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:09,766 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:11,777 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:13,791 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:15,802 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:17,812 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:19,822 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:21,833 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:23,843 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:25,855 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:27,868 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:29,878 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:31,891 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:33,904 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:35,917 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:37,927 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:39,664 | INFO     | proceeding with final server update
[2025-07-22 11:48:56] 2025-07-22 09:48:39,664 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:48:56] 2025-07-22 09:48:39,664 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:48:56] 2025-07-22 09:48:39,664 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:48:56] 2025-07-22 09:48:39,664 | INFO     | job 6741714154 has state 'failed' - writing heartbeat
[2025-07-22 11:48:56] 2025-07-22 09:48:39,665 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:48:56] 2025-07-22 09:48:39,665 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:48:56]     self._target(**self.kwargs)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:48:56]     update_server(job, args)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:48:56]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:48:56]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:48:56]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:48:56]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:48:56] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f1c11e8ab80>)
[2025-07-22 11:48:56] Traceback (most recent call last):
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:48:56]     self._target(**self.kwargs)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:48:56]     update_server(job, args)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:48:56]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:48:56]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:48:56]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:48:56]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:48:56]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:48:56] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:48:56] 
[2025-07-22 11:48:56] None
[2025-07-22 11:48:56] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:48:56] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:48:56] 2025-07-22 09:48:39,941 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:41,954 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:43,967 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:45,981 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:47,993 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139758590826304)>', '<ExcThread(queue_monitor, started 139757497612032)>']
[2025-07-22 11:48:56] 2025-07-22 09:48:50,004 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139758590826304)>'])
[2025-07-22 11:48:56] 2025-07-22 09:48:55,031 | INFO     | all workflow threads have been joined
[2025-07-22 11:48:56] 2025-07-22 09:48:55,031 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:48:56] 2025-07-22 09:48:55,031 | INFO     | traces error code: 0
[2025-07-22 11:48:56] 2025-07-22 09:48:55,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  ==== pilot stdout END ====
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  ==== wrapper stdout RESUME ====
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  pilotpid: 1443216
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  Pilot exit status: 0
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  pandaids: 
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  No supervise_pilot CHILD process found
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  Test setup, not cleaning
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  apfmon messages muted
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:48:56]  ==== wrapper stdout END ====
[2025-07-22 11:48:56] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:48:56]  ==== wrapper stderr END ====
[2025-07-22 11:48:56]  *** Error codes and diagnostics ***
[2025-07-22 11:48:56]  *** Listing of results directory ***
[2025-07-22 11:48:56] total 314380
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc    530466 Jul 22 05:26 pilot3.tar.gz
[2025-07-22 11:48:56] -rwx------ 1 boinc boinc     36292 Jul 22 05:28 runpilot2-wrapper.sh
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:28 queuedata.json
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:48:56] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:41 run_atlas
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:41 job.xml
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc 317950359 Jul 22 11:41 EVNT.45697451._000157.pool.root.1
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc    542898 Jul 22 11:41 input.tar.gz
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:41 start_atlas.sh
[2025-07-22 11:48:56] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:41 shared
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:41 boinc_setup_complete
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:41 init_data.xml
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:41 boinc_lockfile
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc      2634 Jul 22 11:41 pandaJob.out
[2025-07-22 11:48:56] -rw------- 1 boinc boinc    976638 Jul 22 11:42 agis_schedconf.cvmfs.json
[2025-07-22 11:48:56] -rw------- 1 boinc boinc   1593031 Jul 22 11:42 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:48:56] drwx------ 4 boinc boinc      4096 Jul 22 11:42 pilot3
[2025-07-22 11:48:56] -rw------- 1 boinc boinc       735 Jul 22 11:45 heartbeat.json
[2025-07-22 11:48:56] -rw------- 1 boinc boinc        95 Jul 22 11:45 pilot_heartbeat.json
[2025-07-22 11:48:56] -rw------- 1 boinc boinc       936 Jul 22 11:46 memory_monitor_summary.json
[2025-07-22 11:48:56] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:46 PanDA_Pilot-6741714154
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:46 boinc_task_state.xml
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:48 boinc_mmap_file
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:48 wrapper_checkpoint.txt
[2025-07-22 11:48:56] -rw------- 1 boinc boinc     54797 Jul 22 11:48 pilotlog.txt
[2025-07-22 11:48:56] -rw------- 1 boinc boinc     72520 Jul 22 11:48 log.45697453._003921.job.log.1
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:48 runtime_log
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:48 runtime_log.err
[2025-07-22 11:48:56] -rw------- 1 boinc boinc       623 Jul 22 11:48 H9sKDmZrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYCILDmJrbEAo.diag
[2025-07-22 11:48:56] -rw-r--r-- 1 boinc boinc     27827 Jul 22 11:48 stderr.txt
[2025-07-22 11:48:56] No HITS result produced
[2025-07-22 11:48:56]  *** Contents of shared directory: ***
[2025-07-22 11:48:56] total 311052
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc 317950359 Jul 22 11:41 ATLAS.root_0
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc    542898 Jul 22 11:41 input.tar.gz
[2025-07-22 11:48:56] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:41 start_atlas.sh
11:48:57 (1263789): run_atlas exited; CPU time 18.899673
11:48:57 (1263789): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>H9sKDmZrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYCILDmJrbEAo_1_r652508923_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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