Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:29 (3845267): wrapper (7.7.26015): starting
10:56:29 (3845267): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 10:56:29] Arguments: --nthreads 3
[2025-07-22 10:56:29] Threads: 3
[2025-07-22 10:56:29] Checking for CVMFS
[2025-07-22 10:56:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:56:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:56:30] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:56:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:56:32] 2.9.2.0 2510448 10 32676 148614 1 5 8823993 36864000 0 130560 0 1 100.000 1 3 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 10:56:32] CVMFS is ok
[2025-07-22 10:56:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:56:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:56:32] Further information can be found at the LHC@home message board.
[2025-07-22 10:56:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:56:32] Checking for apptainer binary...
[2025-07-22 10:56:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:56:32] Running /usr/bin/apptainer --version
[2025-07-22 10:56:32] apptainer version 1.4.1-1.1
[2025-07-22 10:56:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:56:33] thA373
[2025-07-22 10:56:33] apptainer works
[2025-07-22 10:56:33] Set ATHENA_PROC_NUMBER=3
[2025-07-22 10:56:33] Set ATHENA_CORE_NUMBER=3
[2025-07-22 10:56:33] Starting ATLAS job with PandaID=6741714159
[2025-07-22 10:56:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:03:44]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:03:44] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f8caff1c940>)
[2025-07-22 11:03:44] Traceback (most recent call last):
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:03:44]     self._target(**self.kwargs)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:03:44]     if _stage_out_new(job, args):
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:03:44]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:03:44]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:03:44]     list_work_dir(workdir)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:03:44]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:03:44]     process = subprocess.Popen(
[2025-07-22 11:03:44]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:03:44]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:03:44]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:03:44]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:03:44] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:03:44] 
[2025-07-22 11:03:44] None
[2025-07-22 11:03:44] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:03:44] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:03:44] 2025-07-22 09:01:02,002 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:03:44] 2025-07-22 09:01:02,063 | INFO     | monitor loop #43: job 0:6741714159 is in state 'failed'
[2025-07-22 11:03:44] 2025-07-22 09:01:02,063 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:03:44] 2025-07-22 09:01:04,567 | INFO     | monitor loop #44: job 0:6741714159 is in state 'failed'
[2025-07-22 11:03:44] 2025-07-22 09:01:04,567 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:03:44] 2025-07-22 09:01:07,071 | INFO     | monitor loop #45: job 0:6741714159 is in state 'failed'
[2025-07-22 11:03:44] 2025-07-22 09:01:07,071 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:03:44] 2025-07-22 09:01:07,478 | INFO     | PID=3976128 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 11:03:44] 2025-07-22 09:01:07,478 | INFO     | .. there are 2 such processes running
[2025-07-22 11:03:44] 2025-07-22 09:01:09,576 | INFO     | monitor loop #46: job 0:6741714159 is in state 'failed'
[2025-07-22 11:03:44] 2025-07-22 09:01:09,576 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:03:44] 2025-07-22 09:01:11,368 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:03:44] 2025-07-22 09:01:11,368 | INFO     | aborting loop
[2025-07-22 11:03:44] 2025-07-22 09:01:11,371 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:03:44] 2025-07-22 09:01:11,371 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 11:03:44] 2025-07-22 09:01:11,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:03:44] 2025-07-22 09:01:11,503 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:03:44] 2025-07-22 09:01:11,503 | INFO     | aborting job 6741714159
[2025-07-22 11:03:44] 2025-07-22 09:01:11,859 | INFO     | all data control threads have been joined
[2025-07-22 11:03:44] 2025-07-22 09:01:11,997 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:03:44] 2025-07-22 09:01:11,997 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:03:44] 2025-07-22 09:01:12,373 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:12,578 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:12,583 | INFO     | all payload control threads have been joined
[2025-07-22 11:03:44] 2025-07-22 09:01:12,837 | INFO     | all job control threads have been joined
[2025-07-22 11:03:44] 2025-07-22 09:01:12,865 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:12,865 | INFO     | [data] control thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:12,983 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,002 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,023 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,061 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,145 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,531 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,588 | INFO     | [payload] control thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,761 | INFO     | [job] validate thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:13,843 | INFO     | [job] control thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:15,380 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:03:44] 2025-07-22 09:01:32,475 | INFO     | job 6741714159 has state=failed
[2025-07-22 11:03:44] 2025-07-22 09:01:32,475 | INFO     | preparing for final server update for job 6741714159 in state='failed'
[2025-07-22 11:03:44] 2025-07-22 09:01:33,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:03:44] 2025-07-22 09:01:33,126 | INFO     | [monitor] control thread has ended
[2025-07-22 11:03:44] 2025-07-22 09:01:34,023 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:36,033 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:38,044 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:40,057 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:42,069 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:44,080 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:46,094 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:48,104 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:50,117 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:52,128 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:54,141 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:56,152 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:01:58,164 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:00,179 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:02,190 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:04,203 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:06,213 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:08,225 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:10,237 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:12,251 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:14,265 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:16,277 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:18,289 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:20,302 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:22,315 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:24,329 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:26,339 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:28,351 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:30,362 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:32,372 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:34,385 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:36,396 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:38,405 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:40,415 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:42,429 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:44,440 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:46,454 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:48,468 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:50,480 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:52,491 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:54,505 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:56,518 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:02:58,531 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:00,543 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:02,556 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:04,580 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:06,591 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:08,604 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:10,615 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:12,631 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:14,642 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:16,655 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:18,666 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:20,678 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:22,692 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:24,705 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:26,716 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:27,681 | INFO     | proceeding with final server update
[2025-07-22 11:03:44] 2025-07-22 09:03:27,682 | WARNING  | exception caught in urlopen: <urlopen error [Errno -2] Name or service not known>
[2025-07-22 11:03:44] 2025-07-22 09:03:27,683 | WARNING  | failed to send data to https://pilot.atlas-ml.org: response=<urlopen error [Errno -2] Name or service not known>
[2025-07-22 11:03:44] 2025-07-22 09:03:27,683 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /local/data/boinc/slots/0/PanDA_Pilot-6741714
[2025-07-22 11:03:44] 2025-07-22 09:03:27,718 | WARNING  | exception caught: [Errno 116] Stale file handle: '/bin/bash'
[2025-07-22 11:03:44] 2025-07-22 09:03:27,718 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:03:44] 2025-07-22 09:03:27,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:03:44] 2025-07-22 09:03:27,719 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:03:44] 2025-07-22 09:03:27,719 | INFO     | job 6741714159 has state 'failed' - writing heartbeat
[2025-07-22 11:03:44] 2025-07-22 09:03:27,719 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:03:44] 2025-07-22 09:03:27,720 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:03:44]     self._target(**self.kwargs)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:03:44]     update_server(job, args)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:03:44]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:03:44]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:03:44]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:03:44]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:03:44] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f8cb1e6d080>)
[2025-07-22 11:03:44] Traceback (most recent call last):
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:03:44]     self._target(**self.kwargs)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:03:44]     update_server(job, args)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:03:44]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:03:44]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:03:44]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:03:44]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:03:44]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:03:44] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:03:44] 
[2025-07-22 11:03:44] None
[2025-07-22 11:03:44] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:03:44] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:03:44] 2025-07-22 09:03:28,726 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:30,739 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:32,749 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:34,762 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:36,773 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140242310252352)>', '<ExcThread(queue_monitor, started 140242038265600)>']
[2025-07-22 11:03:44] 2025-07-22 09:03:38,783 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140242310252352)>'])
[2025-07-22 11:03:44] 2025-07-22 09:03:43,808 | INFO     | all workflow threads have been joined
[2025-07-22 11:03:44] 2025-07-22 09:03:43,808 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:03:44] 2025-07-22 09:03:43,808 | INFO     | traces error code: 0
[2025-07-22 11:03:44] 2025-07-22 09:03:43,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  ==== pilot stdout END ====
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  ==== wrapper stdout RESUME ====
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  pilotpid: 3976128
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  Pilot exit status: 0
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  pandaids: 
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  No supervise_pilot CHILD process found
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  Test setup, not cleaning
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  apfmon messages muted
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:03:44]  ==== wrapper stdout END ====
[2025-07-22 11:03:44] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:03:44]  ==== wrapper stderr END ====
[2025-07-22 11:03:44]  *** Error codes and diagnostics ***
[2025-07-22 11:03:44]  *** Listing of results directory ***
[2025-07-22 11:03:44] total 312752
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc    530466 Jul 22 05:26 pilot3.tar.gz
[2025-07-22 11:03:44] -rwx------ 1 boinc boinc     36292 Jul 22 05:28 runpilot2-wrapper.sh
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:28 queuedata.json
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc       100 Jul 22 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:03:44] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 10:56 run_atlas
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc       105 Jul 22 10:56 job.xml
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc 316285211 Jul 22 10:56 EVNT.45697451._000158.pool.root.1
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc    542896 Jul 22 10:56 input.tar.gz
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:56 start_atlas.sh
[2025-07-22 11:03:44] drwxrwx--x 2 boinc boinc      4096 Jul 22 10:56 shared
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:56 boinc_setup_complete
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc      6271 Jul 22 10:56 init_data.xml
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:56 boinc_lockfile
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc      2631 Jul 22 10:56 pandaJob.out
[2025-07-22 11:03:44] -rw------- 1 boinc boinc    976662 Jul 22 10:57 agis_schedconf.cvmfs.json
[2025-07-22 11:03:44] -rw------- 1 boinc boinc   1593031 Jul 22 10:57 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:03:44] drwx------ 4 boinc boinc      4096 Jul 22 10:57 pilot3
[2025-07-22 11:03:44] -rw------- 1 boinc boinc       742 Jul 22 11:00 heartbeat.json
[2025-07-22 11:03:44] -rw------- 1 boinc boinc        95 Jul 22 11:00 pilot_heartbeat.json
[2025-07-22 11:03:44] -rw------- 1 boinc boinc       942 Jul 22 11:00 memory_monitor_summary.json
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:03 wrapper_checkpoint.txt
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:03 boinc_mmap_file
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:03 boinc_task_state.xml
[2025-07-22 11:03:44] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:03 PanDA_Pilot-6741714159
[2025-07-22 11:03:44] -rw------- 1 boinc boinc     55287 Jul 22 11:03 pilotlog.txt
[2025-07-22 11:03:44] -rw------- 1 boinc boinc     73010 Jul 22 11:03 log.45697453._003926.job.log.1
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:03 runtime_log
[2025-07-22 11:03:44] -rw------- 1 boinc boinc       622 Jul 22 11:03 xTzKDmZrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdCILDm52zWfn.diag
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:03 runtime_log.err
[2025-07-22 11:03:44] -rw-r--r-- 1 boinc boinc     28135 Jul 22 11:03 stderr.txt
[2025-07-22 11:03:44] No HITS result produced
[2025-07-22 11:03:44]  *** Contents of shared directory: ***
[2025-07-22 11:03:44] total 309424
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc 316285211 Jul 22 10:56 ATLAS.root_0
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc    542896 Jul 22 10:56 input.tar.gz
[2025-07-22 11:03:44] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:56 start_atlas.sh
11:03:45 (3845267): run_atlas exited; CPU time 18.557453
11:03:45 (3845267): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>xTzKDmZrIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdCILDm52zWfn_1_r1863345050_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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