Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:04:08 (679336): wrapper (7.7.26015): starting
11:04:08 (679336): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 11:04:09] Arguments: --nthreads 3
[2025-07-22 11:04:09] Threads: 3
[2025-07-22 11:04:09] Checking for CVMFS
[2025-07-22 11:04:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 11:04:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 11:04:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 11:04:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 11:04:11] 2.9.2.0 259920 3 30152 148614 0 5 8828458 36864000 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 11:04:11] CVMFS is ok
[2025-07-22 11:04:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 11:04:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 11:04:11] Further information can be found at the LHC@home message board.
[2025-07-22 11:04:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 11:04:11] Checking for apptainer binary...
[2025-07-22 11:04:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 11:04:11] Running /usr/bin/apptainer --version
[2025-07-22 11:04:12] apptainer version 1.4.1-1.1
[2025-07-22 11:04:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 11:04:12] thA373
[2025-07-22 11:04:12] apptainer works
[2025-07-22 11:04:12] Set ATHENA_PROC_NUMBER=3
[2025-07-22 11:04:12] Set ATHENA_CORE_NUMBER=3
[2025-07-22 11:04:13] Starting ATLAS job with PandaID=6741946445
[2025-07-22 11:04:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 11:11:15]  *** The last 200 lines of the pilot log: ***
[2025-07-22 11:11:15]     list_work_dir(workdir)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:11:15]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:11:15]     process = subprocess.Popen(
[2025-07-22 11:11:15]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:11:15]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:11:15]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:11:15]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:11:15] Traceback (most recent call last):
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:11:15]     self._target(**self.kwargs)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 11:11:15]     if _stage_out_new(job, args):
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 11:11:15]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 11:11:15]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 11:11:15]     list_work_dir(workdir)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 11:11:15]     _, stdout, stderr = execute(cmd)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 11:11:15]     process = subprocess.Popen(
[2025-07-22 11:11:15]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 11:11:15]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 11:11:15]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 11:11:15]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 11:11:15] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:11:15] 
[2025-07-22 11:11:15] None
[2025-07-22 11:11:15] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 11:11:15] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:11:15] 2025-07-22 09:08:52,802 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 11:11:15] 2025-07-22 09:08:54,434 | INFO     | monitor loop #48: job 0:6741946445 is in state 'failed'
[2025-07-22 11:11:15] 2025-07-22 09:08:54,434 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:11:15] 2025-07-22 09:08:56,941 | INFO     | monitor loop #49: job 0:6741946445 is in state 'failed'
[2025-07-22 11:11:15] 2025-07-22 09:08:56,941 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:11:15] 2025-07-22 09:08:59,449 | INFO     | monitor loop #50: job 0:6741946445 is in state 'failed'
[2025-07-22 11:11:15] 2025-07-22 09:08:59,449 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:11:15] 2025-07-22 09:09:01,953 | INFO     | monitor loop #51: job 0:6741946445 is in state 'failed'
[2025-07-22 11:11:15] 2025-07-22 09:09:01,953 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 11:11:15] 2025-07-22 09:09:02,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 11:11:15] 2025-07-22 09:09:02,827 | INFO     | will abort loop
[2025-07-22 11:11:15] 2025-07-22 09:09:02,827 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-22 11:11:15] 2025-07-22 09:09:02,827 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 11:11:15] 2025-07-22 09:09:02,827 | INFO     | aborting job 6741946445
[2025-07-22 11:11:15] 2025-07-22 09:09:02,970 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 11:11:15] 2025-07-22 09:09:03,064 | INFO     | all job control threads have been joined
[2025-07-22 11:11:15] 2025-07-22 09:09:03,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 11:11:15] 2025-07-22 09:09:03,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 11:11:15] 2025-07-22 09:09:03,252 | INFO     | job 6741946445 has state=failed
[2025-07-22 11:11:15] 2025-07-22 09:09:03,252 | INFO     | preparing for final server update for job 6741946445 in state='failed'
[2025-07-22 11:11:15] 2025-07-22 09:09:03,683 | INFO     | all data control threads have been joined
[2025-07-22 11:11:15] 2025-07-22 09:09:03,833 | INFO     | [job] job monitor thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:03,924 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:03,959 | INFO     | [job] retrieve thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,069 | INFO     | [job] control thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,091 | INFO     | [data] copytool_in thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,217 | INFO     | [payload] validate_post thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,258 | INFO     | all payload control threads have been joined
[2025-07-22 11:11:15] 2025-07-22 09:09:04,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 11:11:15] 2025-07-22 09:09:04,266 | INFO     | [monitor] control thread has ended
[2025-07-22 11:11:15] 2025-07-22 09:09:04,286 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,647 | INFO     | [job] validate thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:04,689 | INFO     | [data] control thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:05,071 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:05,163 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:05,263 | INFO     | [payload] control thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:05,286 | INFO     | [payload] failed_post thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:06,982 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 11:11:15] 2025-07-22 09:09:07,308 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:09,323 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:11,334 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:13,344 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:15,356 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:17,367 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:19,379 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:21,391 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:23,403 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:25,413 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:27,424 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:29,436 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:31,448 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:33,460 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:35,472 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:37,484 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:39,499 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:41,509 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:43,523 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:45,536 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:47,549 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:49,562 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:51,575 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:53,586 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:55,597 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:57,610 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:09:59,621 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:01,635 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:03,649 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:05,662 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:07,675 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:09,686 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:11,702 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:13,713 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:15,725 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:17,737 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:19,747 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:21,758 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:23,768 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:25,781 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:27,795 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:29,808 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:31,820 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:33,831 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:35,845 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:37,857 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:39,871 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:41,883 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:43,895 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:45,905 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:47,918 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:49,929 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:51,942 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:53,952 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:55,963 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:57,973 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | proceeding with final server update
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | this job has now completed (state=failed)
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | job 6741946445 has state 'failed' - writing heartbeat
[2025-07-22 11:11:15] 2025-07-22 09:10:58,478 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 11:11:15] 2025-07-22 09:10:58,479 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:11:15]     self._target(**self.kwargs)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:11:15]     update_server(job, args)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:11:15]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:11:15]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:11:15]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:11:15]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:11:15] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f8104b79e00>)
[2025-07-22 11:11:15] Traceback (most recent call last):
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 11:11:15]     self._target(**self.kwargs)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 11:11:15]     update_server(job, args)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 11:11:15]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 11:11:15]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 11:11:15]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 11:11:15]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 11:11:15]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 11:11:15] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 11:11:15] 
[2025-07-22 11:11:15] None
[2025-07-22 11:11:15] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 11:11:15] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 11:11:15] 2025-07-22 09:10:59,984 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:11:01,996 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:11:04,008 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:11:06,020 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:11:08,030 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140192164591424)>', '<ExcThread(queue_monitor, started 140191675176704)>']
[2025-07-22 11:11:15] 2025-07-22 09:11:10,042 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140192164591424)>'])
[2025-07-22 11:11:15] 2025-07-22 09:11:15,069 | INFO     | all workflow threads have been joined
[2025-07-22 11:11:15] 2025-07-22 09:11:15,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 11:11:15] 2025-07-22 09:11:15,069 | INFO     | traces error code: 0
[2025-07-22 11:11:15] 2025-07-22 09:11:15,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  ==== pilot stdout END ====
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  ==== wrapper stdout RESUME ====
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  pilotpid: 812479
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  Pilot exit status: 0
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  pandaids: 
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  No supervise_pilot CHILD process found
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  Test setup, not cleaning
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  apfmon messages muted
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 11:11:15]  ==== wrapper stdout END ====
[2025-07-22 11:11:15] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 11:11:15]  ==== wrapper stderr END ====
[2025-07-22 11:11:15]  *** Error codes and diagnostics ***
[2025-07-22 11:11:15]  *** Listing of results directory ***
[2025-07-22 11:11:15] total 313380
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:26 queuedata.json
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc    530466 Jul 22 05:26 pilot3.tar.gz
[2025-07-22 11:11:15] -rwx------ 1 boinc boinc     36292 Jul 22 05:27 runpilot2-wrapper.sh
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc       100 Jul 22 11:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 11:11:15] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 11:04 run_atlas
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc       105 Jul 22 11:04 job.xml
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc 316925635 Jul 22 11:04 EVNT.45697521._000190.pool.root.1
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc    542906 Jul 22 11:04 input.tar.gz
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:04 start_atlas.sh
[2025-07-22 11:11:15] drwxrwx--x 2 boinc boinc      4096 Jul 22 11:04 shared
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:04 boinc_setup_complete
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc      6271 Jul 22 11:04 init_data.xml
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc         0 Jul 22 11:04 boinc_lockfile
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc      2634 Jul 22 11:04 pandaJob.out
[2025-07-22 11:11:15] -rw------- 1 boinc boinc    976662 Jul 22 11:05 agis_schedconf.cvmfs.json
[2025-07-22 11:11:15] -rw------- 1 boinc boinc   1593031 Jul 22 11:05 agis_ddmendpoints.agis.ALL.json
[2025-07-22 11:11:15] drwx------ 4 boinc boinc      4096 Jul 22 11:05 pilot3
[2025-07-22 11:11:15] -rw------- 1 boinc boinc       736 Jul 22 11:08 heartbeat.json
[2025-07-22 11:11:15] -rw------- 1 boinc boinc        95 Jul 22 11:08 pilot_heartbeat.json
[2025-07-22 11:11:15] -rw------- 1 boinc boinc       952 Jul 22 11:08 memory_monitor_summary.json
[2025-07-22 11:11:15] drwxrwx--- 2 boinc boinc      4096 Jul 22 11:08 PanDA_Pilot-6741946445
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc       523 Jul 22 11:08 boinc_task_state.xml
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc      8192 Jul 22 11:10 boinc_mmap_file
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc        22 Jul 22 11:10 wrapper_checkpoint.txt
[2025-07-22 11:11:15] -rw------- 1 boinc boinc     54514 Jul 22 11:11 pilotlog.txt
[2025-07-22 11:11:15] -rw------- 1 boinc boinc     72234 Jul 22 11:11 log.45697523._004759.job.log.1
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc       428 Jul 22 11:11 runtime_log
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc      8610 Jul 22 11:11 runtime_log.err
[2025-07-22 11:11:15] -rw------- 1 boinc boinc       622 Jul 22 11:11 dtaNDmaqIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDCILDmxPXdwn.diag
[2025-07-22 11:11:15] -rw-r--r-- 1 boinc boinc     27543 Jul 22 11:11 stderr.txt
[2025-07-22 11:11:15] No HITS result produced
[2025-07-22 11:11:15]  *** Contents of shared directory: ***
[2025-07-22 11:11:15] total 310052
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc 316925635 Jul 22 11:04 ATLAS.root_0
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc    542906 Jul 22 11:04 input.tar.gz
[2025-07-22 11:11:15] -rw-r--r-- 2 boinc boinc     15095 Jul 22 11:04 start_atlas.sh
11:11:17 (679336): run_atlas exited; CPU time 18.854365
11:11:17 (679336): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>dtaNDmaqIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDCILDmxPXdwn_1_r1459760117_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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