Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:41:41 (1902916): wrapper (7.7.26015): starting
10:41:41 (1902916): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 10:41:41] Arguments: --nthreads 3
[2025-07-22 10:41:41] Threads: 3
[2025-07-22 10:41:41] Checking for CVMFS
[2025-07-22 10:41:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:41:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:41:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:41:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:41:44] 2.9.2.0 1544480 2 30332 148614 1 5 8823993 36864000 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 10:41:44] CVMFS is ok
[2025-07-22 10:41:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:41:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:41:44] Further information can be found at the LHC@home message board.
[2025-07-22 10:41:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:41:44] Checking for apptainer binary...
[2025-07-22 10:41:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:41:44] Running /usr/bin/apptainer --version
[2025-07-22 10:41:44] apptainer version 1.4.1-1.1
[2025-07-22 10:41:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:41:45] thA373
[2025-07-22 10:41:45] apptainer works
[2025-07-22 10:41:45] Set ATHENA_PROC_NUMBER=3
[2025-07-22 10:41:45] Set ATHENA_CORE_NUMBER=3
[2025-07-22 10:41:45] Starting ATLAS job with PandaID=6741742160
[2025-07-22 10:41:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 10:48:45]  *** The last 200 lines of the pilot log: ***
[2025-07-22 10:48:45]     process = subprocess.Popen(
[2025-07-22 10:48:45]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:48:45]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:48:45]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:48:45]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:48:45] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f36ea3bd2c0>)
[2025-07-22 10:48:45] Traceback (most recent call last):
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:48:45]     self._target(**self.kwargs)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 10:48:45]     if _stage_out_new(job, args):
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 10:48:45]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 10:48:45]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 10:48:45]     list_work_dir(workdir)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 10:48:45]     _, stdout, stderr = execute(cmd)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 10:48:45]     process = subprocess.Popen(
[2025-07-22 10:48:45]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:48:45]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:48:45]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:48:45]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:48:45] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:48:45] 
[2025-07-22 10:48:45] None
[2025-07-22 10:48:45] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 10:48:45] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:48:45] 2025-07-22 08:46:22,650 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:48:45] 2025-07-22 08:46:23,470 | INFO     | monitor loop #47: job 0:6741742160 is in state 'failed'
[2025-07-22 10:48:45] 2025-07-22 08:46:23,470 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:48:45] 2025-07-22 08:46:25,982 | INFO     | monitor loop #48: job 0:6741742160 is in state 'failed'
[2025-07-22 10:48:45] 2025-07-22 08:46:25,982 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:48:45] 2025-07-22 08:46:28,487 | INFO     | monitor loop #49: job 0:6741742160 is in state 'failed'
[2025-07-22 10:48:45] 2025-07-22 08:46:28,487 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:48:45] 2025-07-22 08:46:30,992 | INFO     | monitor loop #50: job 0:6741742160 is in state 'failed'
[2025-07-22 10:48:45] 2025-07-22 08:46:30,992 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:48:45] 2025-07-22 08:46:32,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:48:45] 2025-07-22 08:46:32,643 | INFO     | aborting loop
[2025-07-22 10:48:45] 2025-07-22 08:46:32,643 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 10:48:45] 2025-07-22 08:46:32,789 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 10:48:45] 2025-07-22 08:46:32,789 | INFO     | aborting job 6741742160
[2025-07-22 10:48:45] 2025-07-22 08:46:33,347 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 10:48:45] 2025-07-22 08:46:33,347 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 10:48:45] 2025-07-22 08:46:33,347 | INFO     | job 6741742160 has state=failed
[2025-07-22 10:48:45] 2025-07-22 08:46:33,347 | INFO     | preparing for final server update for job 6741742160 in state='failed'
[2025-07-22 10:48:45] 2025-07-22 08:46:33,519 | INFO     | all data control threads have been joined
[2025-07-22 10:48:45] 2025-07-22 08:46:33,654 | INFO     | [job] job monitor thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:33,657 | INFO     | [job] retrieve thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:33,780 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:33,984 | INFO     | all payload control threads have been joined
[2025-07-22 10:48:45] 2025-07-22 08:46:34,051 | INFO     | [data] copytool_in thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,161 | INFO     | [job] validate thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,234 | INFO     | all job control threads have been joined
[2025-07-22 10:48:45] 2025-07-22 08:46:34,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 10:48:45] 2025-07-22 08:46:34,359 | INFO     | [monitor] control thread has ended
[2025-07-22 10:48:45] 2025-07-22 08:46:34,524 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,525 | INFO     | [data] control thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,658 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,905 | INFO     | [payload] failed_post thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:34,990 | INFO     | [payload] control thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:35,087 | INFO     | [payload] validate_post thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:35,239 | INFO     | [job] control thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:36,570 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:36,655 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 10:48:45] 2025-07-22 08:46:36,777 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:38,791 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:40,806 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:42,819 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:44,830 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:46,843 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:48,855 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:50,868 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:52,882 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:54,892 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:56,903 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:46:58,915 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:00,930 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:02,941 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:04,956 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:06,967 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:08,980 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:10,991 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:13,001 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:15,013 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:17,026 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:19,036 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:21,049 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:23,060 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:25,073 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:27,086 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:29,097 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:31,109 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:33,121 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:35,133 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:37,144 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:39,155 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:41,167 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:43,182 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:45,196 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:47,207 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:49,217 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:51,230 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:53,245 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:55,255 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:57,267 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:47:59,277 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:01,290 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:03,302 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:05,313 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:07,325 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:09,336 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:11,347 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:13,358 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:15,375 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:17,387 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:19,404 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:21,414 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:23,424 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:25,435 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:27,451 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:28,574 | INFO     | proceeding with final server update
[2025-07-22 10:48:45] 2025-07-22 08:48:28,576 | WARNING  | exception caught in urlopen: <urlopen error [Errno -2] Name or service not known>
[2025-07-22 10:48:45] 2025-07-22 08:48:28,576 | WARNING  | failed to send data to https://pilot.atlas-ml.org: response=<urlopen error [Errno -2] Name or service not known>
[2025-07-22 10:48:45] 2025-07-22 08:48:28,576 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /local/data/boinc/slots/0/PanDA_Pilot-6741742
[2025-07-22 10:48:45] 2025-07-22 08:48:28,602 | WARNING  | exception caught: [Errno 116] Stale file handle: '/bin/bash'
[2025-07-22 10:48:45] 2025-07-22 08:48:28,603 | INFO     | this job has now completed (state=failed)
[2025-07-22 10:48:45] 2025-07-22 08:48:28,603 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 10:48:45] 2025-07-22 08:48:28,603 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 10:48:45] 2025-07-22 08:48:28,603 | INFO     | job 6741742160 has state 'failed' - writing heartbeat
[2025-07-22 10:48:45] 2025-07-22 08:48:28,603 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 10:48:45] 2025-07-22 08:48:28,604 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:48:45]     self._target(**self.kwargs)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:48:45]     update_server(job, args)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:48:45]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:48:45]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:48:45]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:48:45]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:48:45] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f36ea376780>)
[2025-07-22 10:48:45] Traceback (most recent call last):
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:48:45]     self._target(**self.kwargs)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:48:45]     update_server(job, args)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:48:45]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:48:45]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:48:45]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:48:45]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:48:45]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:48:45] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 10:48:45] 
[2025-07-22 10:48:45] None
[2025-07-22 10:48:45] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 10:48:45] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:48:45] 2025-07-22 08:48:29,465 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:31,478 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:33,492 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:35,502 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:37,517 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139873921894208)>', '<ExcThread(queue_monitor, started 139872975181568)>']
[2025-07-22 10:48:45] 2025-07-22 08:48:39,528 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139873921894208)>'])
[2025-07-22 10:48:45] 2025-07-22 08:48:44,553 | INFO     | all workflow threads have been joined
[2025-07-22 10:48:45] 2025-07-22 08:48:44,553 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 10:48:45] 2025-07-22 08:48:44,553 | INFO     | traces error code: 0
[2025-07-22 10:48:45] 2025-07-22 08:48:44,554 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  ==== pilot stdout END ====
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  ==== wrapper stdout RESUME ====
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  pilotpid: 2034046
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  Pilot exit status: 0
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  pandaids: 
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  No supervise_pilot CHILD process found
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  Test setup, not cleaning
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  apfmon messages muted
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:48:45]  ==== wrapper stdout END ====
[2025-07-22 10:48:45] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 10:48:45]  ==== wrapper stderr END ====
[2025-07-22 10:48:45]  *** Error codes and diagnostics ***
[2025-07-22 10:48:45]  *** Listing of results directory ***
[2025-07-22 10:48:45] total 313100
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc    530466 Jul 22 07:32 pilot3.tar.gz
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc      5112 Jul 22 07:43 queuedata.json
[2025-07-22 10:48:45] -rwx------ 1 boinc boinc     36292 Jul 22 07:44 runpilot2-wrapper.sh
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc       100 Jul 22 10:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 10:48:45] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 10:41 run_atlas
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc       105 Jul 22 10:41 job.xml
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc 316639092 Jul 22 10:41 EVNT.45697451._000235.pool.root.1
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc    542902 Jul 22 10:41 input.tar.gz
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:41 start_atlas.sh
[2025-07-22 10:48:45] drwxrwx--x 2 boinc boinc      4096 Jul 22 10:41 shared
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:41 boinc_setup_complete
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc      6271 Jul 22 10:41 init_data.xml
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:41 boinc_lockfile
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc      2634 Jul 22 10:41 pandaJob.out
[2025-07-22 10:48:45] -rw------- 1 boinc boinc    976662 Jul 22 10:42 agis_schedconf.cvmfs.json
[2025-07-22 10:48:45] -rw------- 1 boinc boinc   1593031 Jul 22 10:42 agis_ddmendpoints.agis.ALL.json
[2025-07-22 10:48:45] drwx------ 4 boinc boinc      4096 Jul 22 10:42 pilot3
[2025-07-22 10:48:45] -rw------- 1 boinc boinc       736 Jul 22 10:45 heartbeat.json
[2025-07-22 10:48:45] -rw------- 1 boinc boinc        95 Jul 22 10:45 pilot_heartbeat.json
[2025-07-22 10:48:45] -rw------- 1 boinc boinc       936 Jul 22 10:46 memory_monitor_summary.json
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc      8192 Jul 22 10:48 boinc_mmap_file
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc        22 Jul 22 10:48 wrapper_checkpoint.txt
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc       522 Jul 22 10:48 boinc_task_state.xml
[2025-07-22 10:48:45] drwxrwx--- 2 boinc boinc      4096 Jul 22 10:48 PanDA_Pilot-6741742160
[2025-07-22 10:48:45] -rw------- 1 boinc boinc     55728 Jul 22 10:48 pilotlog.txt
[2025-07-22 10:48:45] -rw------- 1 boinc boinc     73451 Jul 22 10:48 log.45697453._005862.job.log.1
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc       428 Jul 22 10:48 runtime_log
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc      8610 Jul 22 10:48 runtime_log.err
[2025-07-22 10:48:45] -rw------- 1 boinc boinc       623 Jul 22 10:48 BmrLDmkyKy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyYILDmn5p1Do.diag
[2025-07-22 10:48:45] -rw-r--r-- 1 boinc boinc     27906 Jul 22 10:48 stderr.txt
[2025-07-22 10:48:45] No HITS result produced
[2025-07-22 10:48:45]  *** Contents of shared directory: ***
[2025-07-22 10:48:45] total 309772
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc 316639092 Jul 22 10:41 ATLAS.root_0
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc    542902 Jul 22 10:41 input.tar.gz
[2025-07-22 10:48:45] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:41 start_atlas.sh
10:48:47 (1902916): run_atlas exited; CPU time 18.641150
10:48:47 (1902916): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>BmrLDmkyKy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyYILDmn5p1Do_0_r830614906_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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