Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:14:50 (4180863): wrapper (7.7.26015): starting
15:14:50 (4180863): wrapper: running run_atlas (--nthreads 4)
[2025-07-24 15:14:50] Arguments: --nthreads 4
[2025-07-24 15:14:50] Threads: 4
[2025-07-24 15:14:50] Checking for CVMFS
[2025-07-24 15:14:50] No cvmfs_config command found, will try listing directly
[2025-07-24 15:14:50] CVMFS is ok
[2025-07-24 15:14:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 15:14:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 15:14:50] Further information can be found at the LHC@home message board.
[2025-07-24 15:14:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 15:14:50] Checking for apptainer binary...
[2025-07-24 15:14:50] which: no apptainer in ((null))
[2025-07-24 15:14:50] apptainer is not installed, using version from CVMFS
[2025-07-24 15:14:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 15:14:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-07-24 15:14:50] apptainer works
[2025-07-24 15:14:50] Set ATHENA_PROC_NUMBER=4
[2025-07-24 15:14:50] Set ATHENA_CORE_NUMBER=4
[2025-07-24 15:14:50] Starting ATLAS job with PandaID=6741693764
[2025-07-24 15:14:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:14:32 (1146796): wrapper (7.7.26015): starting
19:14:32 (1146796): wrapper: running run_atlas (--nthreads 4)
[2025-07-24 19:14:32] Arguments: --nthreads 4
[2025-07-24 19:14:32] Threads: 4
[2025-07-24 19:14:32] This job has been restarted, cleaning up previous attempt
[2025-07-24 19:14:33] Checking for CVMFS
[2025-07-24 19:14:33] No cvmfs_config command found, will try listing directly
[2025-07-24 19:14:33] CVMFS is ok
[2025-07-24 19:14:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 19:14:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 19:14:33] Further information can be found at the LHC@home message board.
[2025-07-24 19:14:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 19:14:33] Checking for apptainer binary...
[2025-07-24 19:14:33] which: no apptainer in ((null))
[2025-07-24 19:14:33] apptainer is not installed, using version from CVMFS
[2025-07-24 19:14:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 19:14:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-07-24 19:14:33] apptainer works
[2025-07-24 19:14:33] Set ATHENA_PROC_NUMBER=4
[2025-07-24 19:14:33] Set ATHENA_CORE_NUMBER=4
[2025-07-24 19:14:33] Starting ATLAS job with PandaID=6741693764
[2025-07-24 19:14:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-24 23:25:58]  *** The last 200 lines of the pilot log: ***
[2025-07-24 23:25:58] 2025-07-24 21:24:36,063 | INFO     | PID=1150708 has CPU usage=22.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-24 23:25:58] 2025-07-24 21:24:36,064 | INFO     | .. there are 13 such processes running
[2025-07-24 23:25:58] 2025-07-24 21:24:38,289 | INFO     | monitor loop #1030: job 0:6741693764 is in state 'finished'
[2025-07-24 23:25:58] 2025-07-24 21:24:38,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,528 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-24 23:25:58] 2025-07-24 21:24:38,545 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2808.3501328124976
[2025-07-24 23:25:58] 2025-07-24 21:24:38,567 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6741693764/memory_monitor_summary.json (trf name=prmon)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,567 | INFO     | extracted standard info from prmon json
[2025-07-24 23:25:58] 2025-07-24 21:24:38,567 | INFO     | extracted standard memory fields from prmon json
[2025-07-24 23:25:58] 2025-07-24 21:24:38,568 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-24 23:25:58] 2025-07-24 21:24:38,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-24 23:25:58] 2025-07-24 21:24:38,568 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-24 23:25:58] 2025-07-24 21:24:38,572 | INFO     | fitting pss+swap vs Time
[2025-07-24 23:25:58] 2025-07-24 21:24:38,572 | INFO     | sum of square deviations: 4560048290.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | sum of deviations: 8461024214.999995
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | mean x: 1753384764.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | mean y: 2371490.1551020406
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | -- intersect: -3250978036.635995
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | intersect: -3250978036.635995
[2025-07-24 23:25:58] 2025-07-24 21:24:38,574 | INFO     | chi2: 1.3933375857823307
[2025-07-24 23:25:58] 2025-07-24 21:24:38,575 | INFO     | sum of square deviations: 4286517580.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,576 | INFO     | sum of deviations: 7976442380.500004
[2025-07-24 23:25:58] 2025-07-24 21:24:38,576 | INFO     | mean x: 1753384611.5
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | mean y: 2371219.970833333
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | -- intersect: -3260363870.5697575
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | intersect: -3260363870.5697575
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | chi2: 1.3933670636049804
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | current chi2=1.3933670636049804 (change=-0.0021156267476395464 %)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | right removable region: 239
[2025-07-24 23:25:58] 2025-07-24 21:24:38,577 | INFO     | sum of square deviations: 4286517580.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | sum of deviations: -23618327913.499996
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | mean x: 1753384916.5
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | mean y: 2389188.2125
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | -- intersect: 9663383023.791685
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | intersect: 9663383023.791685
[2025-07-24 23:25:58] 2025-07-24 21:24:38,579 | INFO     | chi2: 0.06221651407093648
[2025-07-24 23:25:58] 2025-07-24 21:24:38,580 | INFO     | current chi2=0.06221651407093648 (change=95.53471357510224 %)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,580 | INFO     | sum of square deviations: 4024149870.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,581 | INFO     | sum of deviations: -22463581230.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | mean x: 1753385069.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | mean y: 2388503.825531915
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | -- intersect: 9790122360.007845
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | intersect: 9790122360.007845
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | chi2: 0.05885857984001011
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | current chi2=0.05885857984001011 (change=5.397175140828048 %)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,582 | INFO     | left removable region: 20
[2025-07-24 23:25:58] 2025-07-24 21:24:38,583 | INFO     | sum of square deviations: 3256879670.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,584 | INFO     | sum of deviations: -14667282799.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,584 | INFO     | mean x: 1753385191.0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,584 | INFO     | mean y: 2383636.095890411
[2025-07-24 23:25:58] 2025-07-24 21:24:38,584 | INFO     | -- intersect: 7898713576.948642
[2025-07-24 23:25:58] 2025-07-24 21:24:38,584 | INFO     | intersect: 7898713576.948642
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | chi2: 0.047300259984046494
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | -- intersect: 7898713576.948642
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | current memory leak: -4.50 B/s (using 219 data points, chi2=0.05)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | could have reported an average CPU frequency of 2751 MHz (12 samples)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | ..............................
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | . Timing measurements:
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | . get job = 0 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,585 | INFO     | . initial setup = 1 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | . payload setup = 10 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | . stage-in = 0 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | . payload execution = 14951 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | . stage-out = 1 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | . log creation = 0 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,586 | INFO     | ..............................
[2025-07-24 23:25:58] 2025-07-24 21:24:38,670 | INFO     | 
[2025-07-24 23:25:58] 2025-07-24 21:24:38,670 | INFO     | job summary report
[2025-07-24 23:25:58] 2025-07-24 21:24:38,670 | INFO     | --------------------------------------------------
[2025-07-24 23:25:58] 2025-07-24 21:24:38,670 | INFO     | PanDA job id: 6741693764
[2025-07-24 23:25:58] 2025-07-24 21:24:38,670 | INFO     | task id: 45697541
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | errors: (none)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | pilot state: finished 
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | transexitcode: 0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | exeerrorcode: 0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | exeerrordiag: 
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | exitcode: 0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | exitmsg: OK
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | cpuconsumptiontime: 57955 s
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | nevents: 400
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | neventsw: 0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | pid: 1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | pgrp: 1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:38,671 | INFO     | corecount: 4
[2025-07-24 23:25:58] 2025-07-24 21:24:38,672 | INFO     | event service: False
[2025-07-24 23:25:58] 2025-07-24 21:24:38,672 | INFO     | sizes: {0: 2397527, 1: 2397527, 7: 2397817, 11: 2397845, 14964: 2429303, 14965: 2429302, 14966: 2438508, 14967: 2438564, 14974: 2438758}
[2025-07-24 23:25:58] 2025-07-24 21:24:38,672 | INFO     | --------------------------------------------------
[2025-07-24 23:25:58] 2025-07-24 21:24:38,672 | INFO     | 
[2025-07-24 23:25:58] 2025-07-24 21:24:38,672 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2025-07-24 23:25:58] 2025-07-24 21:24:38,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,702 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-24 23:25:58] 2025-07-24 21:24:38,704 | INFO     | job 6741693764 has completed (purged errors)
[2025-07-24 23:25:58] 2025-07-24 21:24:38,704 | INFO     | overall cleanup function is called
[2025-07-24 23:25:58] 2025-07-24 21:24:39,713 | INFO     | --- collectZombieJob: --- 10, [1160139]
[2025-07-24 23:25:58] 2025-07-24 21:24:39,713 | INFO     | zombie collector waiting for pid 1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:39,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-24 23:25:58] 2025-07-24 21:24:39,714 | INFO     | collected zombie processes
[2025-07-24 23:25:58] 2025-07-24 21:24:39,714 | INFO     | will attempt to kill all subprocesses of pid=1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:40,382 | INFO     | process IDs to be killed: [1160139] (in reverse order)
[2025-07-24 23:25:58] 2025-07-24 21:24:40,617 | WARNING  | found no corresponding commands to process id(s)
[2025-07-24 23:25:58] 2025-07-24 21:24:40,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-24 23:25:58] 2025-07-24 21:24:40,643 | INFO     | did not find any defunct processes belonging to 1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:40,670 | INFO     | did not find any defunct processes belonging to 1160139
[2025-07-24 23:25:58] 2025-07-24 21:24:40,671 | INFO     | ready for new job
[2025-07-24 23:25:58] 2025-07-24 21:24:40,671 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-24 23:25:58] 2025-07-24 21:24:40,674 | INFO     | ***************************************
[2025-07-24 23:25:58] 2025-07-24 21:24:40,675 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-24 23:25:58] 2025-07-24 21:24:40,675 | INFO     | ***************************************
[2025-07-24 23:25:58] 2025-07-24 21:24:40,675 | INFO     | 
[2025-07-24 23:25:58] 2025-07-24 21:24:40,684 | INFO     | architecture information:
[2025-07-24 23:25:58] 2025-07-24 21:24:40,684 | INFO     | executing command: cat /etc/os-release
[2025-07-24 23:25:58] 2025-07-24 21:24:40,708 | INFO     | cat /etc/os-release:
[2025-07-24 23:25:58] NAME="CentOS Linux"
[2025-07-24 23:25:58] VERSION="7 (Core)"
[2025-07-24 23:25:58] ID="centos"
[2025-07-24 23:25:58] ID_LIKE="rhel fedora"
[2025-07-24 23:25:58] VERSION_ID="7"
[2025-07-24 23:25:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-24 23:25:58] ANSI_COLOR="0;31"
[2025-07-24 23:25:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-24 23:25:58] HOME_URL="https://www.centos.org/"
[2025-07-24 23:25:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-24 23:25:58] 
[2025-07-24 23:25:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-24 23:25:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-24 23:25:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-24 23:25:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-24 23:25:58] 
[2025-07-24 23:25:58] 2025-07-24 21:24:40,709 | INFO     | ***************************************
[2025-07-24 23:25:58] 2025-07-24 21:24:41,211 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2025-07-24 23:25:58] 2025-07-24 21:24:41,236 | INFO     | sufficient remaining disk space (3093798322176 B)
[2025-07-24 23:25:58] 2025-07-24 21:24:41,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-24 23:25:58] 2025-07-24 21:24:41,237 | INFO     | current server update state: UPDATING_FINAL
[2025-07-24 23:25:58] 2025-07-24 21:24:41,237 | INFO     | update_server=False
[2025-07-24 23:25:58] 2025-07-24 21:24:41,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-24 23:25:58] 2025-07-24 21:24:41,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-24 23:25:58] 2025-07-24 21:24:41,797 | INFO     | aborting loop
[2025-07-24 23:25:58] 2025-07-24 21:24:41,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-24 23:25:58] 2025-07-24 21:24:41,907 | INFO     | all data control threads have been joined
[2025-07-24 23:25:58] 2025-07-24 21:24:41,998 | INFO     | all payload control threads have been joined
[2025-07-24 23:25:58] 2025-07-24 21:24:42,244 | INFO     | [job] retrieve thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-24 23:25:58] 2025-07-24 21:24:42,596 | INFO     | [payload] failed_post thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,669 | INFO     | [payload] validate_pre thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,728 | INFO     | all job control threads have been joined
[2025-07-24 23:25:58] 2025-07-24 21:24:42,798 | INFO     | [data] copytool_in thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,802 | INFO     | [job] job monitor thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:42,912 | INFO     | [data] control thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,003 | INFO     | [payload] control thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,312 | INFO     | [job] validate thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,367 | INFO     | [payload] validate_post thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,674 | INFO     | [payload] execute_payloads thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-24 23:25:58] 2025-07-24 21:24:43,692 | INFO     | [job] create_data_payload thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,733 | INFO     | [job] control thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:43,874 | INFO     | [data] copytool_out thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:44,686 | INFO     | [job] queue monitor thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:46,490 | INFO     | [data] queue_monitor thread has finished
[2025-07-24 23:25:58] 2025-07-24 21:24:46,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23325753939776)>', '<ExcThread(monitor, started 23325514364672)>']
[2025-07-24 23:25:58] 2025-07-24 21:24:51,646 | INFO     | all workflow threads have been joined
[2025-07-24 23:25:58] 2025-07-24 21:24:51,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-24 23:25:58] 2025-07-24 21:24:51,647 | INFO     | traces error code: 0
[2025-07-24 23:25:58] 2025-07-24 21:24:51,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | INFO     | PID=1150708 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | INFO     | .. there are 13 such processes running
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | INFO     | found 0 job(s) in 20 queues
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-24 23:25:58] 2025-07-24 21:25:10,879 | INFO     | [monitor] control thread has ended
[2025-07-24 23:25:58] 2025-07-24 21:25:11,026 [wrapper] ==== pilot stdout END ====
[2025-07-24 23:25:58] 2025-07-24 21:25:11,030 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-24 23:25:58] 2025-07-24 21:25:11,034 [wrapper] pilotpid: 1150708
[2025-07-24 23:25:58] 2025-07-24 21:25:11,038 [wrapper] Pilot exit status: 0
[2025-07-24 23:25:58] 2025-07-24 21:25:11,053 [wrapper] pandaids: 6741693764 6741693764
[2025-07-24 23:25:58] 2025-07-24 21:25:11,201 [wrapper] cleanup supervisor_pilot 2224687 1150709
[2025-07-24 23:25:58] 2025-07-24 21:25:11,206 [wrapper] Test setup, not cleaning
[2025-07-24 23:25:58] 2025-07-24 21:25:11,210 [wrapper] apfmon messages muted
[2025-07-24 23:25:58] 2025-07-24 21:25:11,213 [wrapper] ==== wrapper stdout END ====
[2025-07-24 23:25:58] 2025-07-24 21:25:11,217 [wrapper] ==== wrapper stderr END ====
[2025-07-24 23:25:58]  *** Error codes and diagnostics ***
[2025-07-24 23:25:58]     "exeErrorCode": 0,
[2025-07-24 23:25:58]     "exeErrorDiag": "",
[2025-07-24 23:25:58]     "pilotErrorCode": 0,
[2025-07-24 23:25:58]     "pilotErrorDiag": "",
[2025-07-24 23:25:58]  *** Listing of results directory ***
[2025-07-24 23:25:58] total 974708
[2025-07-24 23:25:58] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc    530466 Jul 22 00:09 pilot3.tar.gz
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc      5112 Jul 22 00:10 queuedata.json
[2025-07-24 23:25:58] -rwx------ 1 boinc boinc     36292 Jul 22 00:10 runpilot2-wrapper.sh
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc       100 Jul 24 15:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-24 23:25:58] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 15:14 run_atlas
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc       105 Jul 24 15:14 job.xml
[2025-07-24 23:25:58] -rw-r--r-- 3 boinc boinc 343461569 Jul 24 15:14 EVNT.45697539._000045.pool.root.1
[2025-07-24 23:25:58] -rw-r--r-- 3 boinc boinc 343461569 Jul 24 15:14 ATLAS.root_0
[2025-07-24 23:25:58] -rw-r--r-- 2 boinc boinc     15095 Jul 24 15:14 start_atlas.sh
[2025-07-24 23:25:58] drwxrwx--x 2 boinc boinc      4096 Jul 24 15:14 shared
[2025-07-24 23:25:58] -rw-r--r-- 2 boinc boinc    542889 Jul 24 15:14 input.tar.gz
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc         0 Jul 24 15:14 boinc_lockfile
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc      2591 Jul 24 19:14 pandaJob.out
[2025-07-24 23:25:58] -rw------- 1 boinc boinc    979677 Jul 24 19:14 agis_schedconf.cvmfs.json
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc      6696 Jul 24 21:17 init_data.xml
[2025-07-24 23:25:58] -rw------- 1 boinc boinc 303856577 Jul 24 23:23 HITS.45697541._001113.pool.root.1
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc       532 Jul 24 23:23 boinc_task_state.xml
[2025-07-24 23:25:58] -rw------- 1 boinc boinc        96 Jul 24 23:24 pilot_heartbeat.json
[2025-07-24 23:25:58] -rw------- 1 boinc boinc      1032 Jul 24 23:24 memory_monitor_summary.json
[2025-07-24 23:25:58] -rw------- 1 boinc boinc   1593052 Jul 24 23:24 agis_ddmendpoints.agis.ALL.json
[2025-07-24 23:25:58] -rw------- 1 boinc boinc    345084 Jul 24 23:24 log.45697541._001113.job.log.tgz.1
[2025-07-24 23:25:58] -rw------- 1 boinc boinc      7785 Jul 24 23:24 heartbeat.json
[2025-07-24 23:25:58] -rw------- 1 boinc boinc       823 Jul 24 23:25 pilotlog.txt
[2025-07-24 23:25:58] -rw------- 1 boinc boinc   1375362 Jul 24 23:25 log.45697541._001113.job.log.1
[2025-07-24 23:25:58] -rw------- 1 boinc boinc       357 Jul 24 23:25 output.list
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc       620 Jul 24 23:25 runtime_log
[2025-07-24 23:25:58] -rw------- 1 boinc boinc   1740800 Jul 24 23:25 result.tar.gz
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc      9119 Jul 24 23:25 runtime_log.err
[2025-07-24 23:25:58] -rw------- 1 boinc boinc       795 Jul 24 23:25 WEGLDmitDy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYzGLDmWEuSCo.diag
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc        29 Jul 24 23:25 wrapper_checkpoint.txt
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc      8192 Jul 24 23:25 boinc_mmap_file
[2025-07-24 23:25:58] -rw-r--r-- 1 boinc boinc     22975 Jul 24 23:25 stderr.txt
[2025-07-24 23:25:58] HITS file was successfully produced:
[2025-07-24 23:25:58] -rw------- 1 boinc boinc 303856577 Jul 24 23:23 shared/HITS.pool.root.1
[2025-07-24 23:25:58]  *** Contents of shared directory: ***
[2025-07-24 23:25:58] total 634404
[2025-07-24 23:25:58] -rw-r--r-- 3 boinc boinc 343461569 Jul 24 15:14 ATLAS.root_0
[2025-07-24 23:25:58] -rw-r--r-- 2 boinc boinc     15095 Jul 24 15:14 start_atlas.sh
[2025-07-24 23:25:58] -rw-r--r-- 2 boinc boinc    542889 Jul 24 15:14 input.tar.gz
[2025-07-24 23:25:58] -rw------- 1 boinc boinc 303856577 Jul 24 23:23 HITS.pool.root.1
[2025-07-24 23:25:58] -rw------- 1 boinc boinc   1740800 Jul 24 23:25 result.tar.gz
23:25:59 (1146796): run_atlas exited; CPU time 58806.092010
23:25:59 (1146796): called boinc_finish(0)

</stderr_txt>
]]>

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