Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:25 (963972): wrapper (7.7.26015): starting
10:34:25 (963972): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 10:34:25] Arguments: --nthreads 3
[2025-07-22 10:34:25] Threads: 3
[2025-07-22 10:34:25] Checking for CVMFS
[2025-07-22 10:34:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:34:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:34:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:34:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:34:28] 2.9.2.0 560432 3 30328 148614 0 5 8823993 36864000 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 10:34:28] CVMFS is ok
[2025-07-22 10:34:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:34:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:34:28] Further information can be found at the LHC@home message board.
[2025-07-22 10:34:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:34:28] Checking for apptainer binary...
[2025-07-22 10:34:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:34:28] Running /usr/bin/apptainer --version
[2025-07-22 10:34:28] apptainer version 1.4.1-1.1
[2025-07-22 10:34:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:34:29] thA373
[2025-07-22 10:34:29] apptainer works
[2025-07-22 10:34:29] Set ATHENA_PROC_NUMBER=3
[2025-07-22 10:34:29] Set ATHENA_CORE_NUMBER=3
[2025-07-22 10:34:29] Starting ATLAS job with PandaID=6741742123
[2025-07-22 10:34:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 10:41:36]  *** The last 200 lines of the pilot log: ***
[2025-07-22 10:41:36]     process = subprocess.Popen(
[2025-07-22 10:41:36]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:41:36]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:41:36]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:41:36]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:41:36] Traceback (most recent call last):
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:41:36]     self._target(**self.kwargs)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 10:41:36]     if _stage_out_new(job, args):
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 10:41:36]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 10:41:36]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 10:41:36]     list_work_dir(workdir)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 10:41:36]     _, stdout, stderr = execute(cmd)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 10:41:36]     process = subprocess.Popen(
[2025-07-22 10:41:36]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:41:36]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:41:36]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:41:36]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:41:36] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:41:36] 
[2025-07-22 10:41:36] None
[2025-07-22 10:41:36] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 10:41:36] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:41:36] 2025-07-22 08:38:54,475 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:41:36] 2025-07-22 08:38:55,798 | INFO     | monitor loop #43: job 0:6741742123 is in state 'failed'
[2025-07-22 10:41:36] 2025-07-22 08:38:55,798 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:41:36] 2025-07-22 08:38:58,303 | INFO     | monitor loop #44: job 0:6741742123 is in state 'failed'
[2025-07-22 10:41:36] 2025-07-22 08:38:58,303 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:41:36] 2025-07-22 08:39:00,811 | INFO     | monitor loop #45: job 0:6741742123 is in state 'failed'
[2025-07-22 10:41:36] 2025-07-22 08:39:00,811 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:41:36] 2025-07-22 08:39:03,318 | INFO     | monitor loop #46: job 0:6741742123 is in state 'failed'
[2025-07-22 10:41:36] 2025-07-22 08:39:03,318 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:41:36] 2025-07-22 08:39:03,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:41:36] 2025-07-22 08:39:03,511 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 10:41:36] 2025-07-22 08:39:03,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 10:41:36] 2025-07-22 08:39:03,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:41:36] 2025-07-22 08:39:03,514 | INFO     | will abort loop
[2025-07-22 10:41:36] 2025-07-22 08:39:03,992 | INFO     | all job control threads have been joined
[2025-07-22 10:41:36] 2025-07-22 08:39:04,283 | INFO     | all data control threads have been joined
[2025-07-22 10:41:36] 2025-07-22 08:39:04,468 | INFO     | all payload control threads have been joined
[2025-07-22 10:41:36] 2025-07-22 08:39:04,519 | INFO     | [job] job monitor thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:04,532 | INFO     | PID=1092242 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 10:41:36] 2025-07-22 08:39:04,532 | INFO     | .. there are 2 such processes running
[2025-07-22 10:41:36] 2025-07-22 08:39:04,532 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 10:41:36] 2025-07-22 08:39:04,533 | INFO     | aborting job 6741742123
[2025-07-22 10:41:36] 2025-07-22 08:39:04,701 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:04,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 10:41:36] 2025-07-22 08:39:04,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 10:41:36] 2025-07-22 08:39:04,997 | INFO     | [job] control thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,076 | INFO     | [payload] validate_post thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,107 | INFO     | [job] validate thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,288 | INFO     | [data] control thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,335 | INFO     | [data] copytool_in thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,474 | INFO     | [payload] control thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,491 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,818 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:05,840 | INFO     | [job] retrieve thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:06,066 | INFO     | [payload] failed_post thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:07,519 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 10:41:36] 2025-07-22 08:39:24,613 | INFO     | job 6741742123 has state=failed
[2025-07-22 10:41:36] 2025-07-22 08:39:24,613 | INFO     | preparing for final server update for job 6741742123 in state='failed'
[2025-07-22 10:41:36] 2025-07-22 08:39:24,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 10:41:36] 2025-07-22 08:39:24,950 | INFO     | [monitor] control thread has ended
[2025-07-22 10:41:36] 2025-07-22 08:39:25,683 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:27,694 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:29,706 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:31,721 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:33,732 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:35,743 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:37,755 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:39,767 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:41,780 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:43,793 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:45,805 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:47,815 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:49,826 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:51,837 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:53,848 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:55,860 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:57,870 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:39:59,883 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:01,897 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:03,909 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:05,920 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:07,934 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:09,946 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:11,957 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:13,969 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:15,979 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:17,991 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:20,005 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:22,020 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:24,033 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:26,046 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:28,059 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:30,069 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:32,079 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:34,089 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:36,099 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:38,110 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:40,123 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:42,135 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:44,149 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:46,162 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:48,176 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:50,186 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:52,196 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:54,209 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:56,221 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:40:58,233 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:00,246 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:02,256 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:04,267 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:06,279 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:08,294 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:10,304 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:12,316 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:14,328 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:16,339 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:18,351 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | proceeding with final server update
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | this job has now completed (state=failed)
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | job 6741742123 has state 'failed' - writing heartbeat
[2025-07-22 10:41:36] 2025-07-22 08:41:19,831 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 10:41:36] 2025-07-22 08:41:19,832 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:41:36]     self._target(**self.kwargs)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:41:36]     update_server(job, args)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:41:36]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:41:36]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:41:36]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:41:36]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:41:36] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f145067d080>)
[2025-07-22 10:41:36] Traceback (most recent call last):
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:41:36]     self._target(**self.kwargs)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:41:36]     update_server(job, args)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:41:36]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:41:36]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:41:36]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:41:36]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:41:36]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:41:36] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 10:41:36] 
[2025-07-22 10:41:36] None
[2025-07-22 10:41:36] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 10:41:36] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:41:36] 2025-07-22 08:41:20,363 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:22,375 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:24,388 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:26,400 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:28,411 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139725279438656)>', '<ExcThread(queue_monitor, started 139724404549376)>']
[2025-07-22 10:41:36] 2025-07-22 08:41:30,423 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139725279438656)>'])
[2025-07-22 10:41:36] 2025-07-22 08:41:35,450 | INFO     | all workflow threads have been joined
[2025-07-22 10:41:36] 2025-07-22 08:41:35,450 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 10:41:36] 2025-07-22 08:41:35,450 | INFO     | traces error code: 0
[2025-07-22 10:41:36] 2025-07-22 08:41:35,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  ==== pilot stdout END ====
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  ==== wrapper stdout RESUME ====
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  pilotpid: 1092242
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  Pilot exit status: 0
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  pandaids: 
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  No supervise_pilot CHILD process found
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  Test setup, not cleaning
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  apfmon messages muted
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:41:36]  ==== wrapper stdout END ====
[2025-07-22 10:41:36] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 10:41:36]  ==== wrapper stderr END ====
[2025-07-22 10:41:36]  *** Error codes and diagnostics ***
[2025-07-22 10:41:36]  *** Listing of results directory ***
[2025-07-22 10:41:36] total 313172
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc    530466 Jul 22 07:32 pilot3.tar.gz
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc      5112 Jul 22 07:43 queuedata.json
[2025-07-22 10:41:36] -rwx------ 1 boinc boinc     36292 Jul 22 07:43 runpilot2-wrapper.sh
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc       100 Jul 22 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 10:41:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 10:34 run_atlas
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc       105 Jul 22 10:34 job.xml
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc 316713817 Jul 22 10:34 EVNT.45697451._000233.pool.root.1
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc    542913 Jul 22 10:34 input.tar.gz
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:34 start_atlas.sh
[2025-07-22 10:41:36] drwxrwx--x 2 boinc boinc      4096 Jul 22 10:34 shared
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:34 boinc_setup_complete
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc      6271 Jul 22 10:34 init_data.xml
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:34 boinc_lockfile
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc      2634 Jul 22 10:34 pandaJob.out
[2025-07-22 10:41:36] -rw------- 1 boinc boinc    976662 Jul 22 10:35 agis_schedconf.cvmfs.json
[2025-07-22 10:41:36] -rw------- 1 boinc boinc   1593031 Jul 22 10:35 agis_ddmendpoints.agis.ALL.json
[2025-07-22 10:41:36] drwx------ 4 boinc boinc      4096 Jul 22 10:35 pilot3
[2025-07-22 10:41:36] -rw------- 1 boinc boinc       736 Jul 22 10:38 heartbeat.json
[2025-07-22 10:41:36] -rw------- 1 boinc boinc        95 Jul 22 10:38 pilot_heartbeat.json
[2025-07-22 10:41:36] -rw------- 1 boinc boinc       936 Jul 22 10:38 memory_monitor_summary.json
[2025-07-22 10:41:36] drwxrwx--- 2 boinc boinc      4096 Jul 22 10:38 PanDA_Pilot-6741742123
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc       523 Jul 22 10:39 boinc_task_state.xml
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc      8192 Jul 22 10:41 boinc_mmap_file
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc        22 Jul 22 10:41 wrapper_checkpoint.txt
[2025-07-22 10:41:36] -rw------- 1 boinc boinc     54609 Jul 22 10:41 pilotlog.txt
[2025-07-22 10:41:36] -rw------- 1 boinc boinc     72332 Jul 22 10:41 log.45697453._005825.job.log.1
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc       428 Jul 22 10:41 runtime_log
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc      8610 Jul 22 10:41 runtime_log.err
[2025-07-22 10:41:36] -rw------- 1 boinc boinc       623 Jul 22 10:41 2NFLDmmxKy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhXuKDm7DtNZm.diag
[2025-07-22 10:41:36] -rw-r--r-- 1 boinc boinc     27851 Jul 22 10:41 stderr.txt
[2025-07-22 10:41:36] No HITS result produced
[2025-07-22 10:41:36]  *** Contents of shared directory: ***
[2025-07-22 10:41:36] total 309844
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc 316713817 Jul 22 10:34 ATLAS.root_0
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc    542913 Jul 22 10:34 input.tar.gz
[2025-07-22 10:41:36] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:34 start_atlas.sh
10:41:38 (963972): run_atlas exited; CPU time 18.441039
10:41:38 (963972): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>2NFLDmmxKy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmhXuKDm7DtNZm_0_r1786382565_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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