Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:26:31 (4162594): wrapper (7.7.26015): starting
10:26:31 (4162594): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 10:26:31] Arguments: --nthreads 3
[2025-07-22 10:26:31] Threads: 3
[2025-07-22 10:26:31] Checking for CVMFS
[2025-07-22 10:26:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:26:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:26:33] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:26:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:26:34] 2.9.2.0 3739029 3 30336 148614 0 5 8823967 36864000 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 10:26:34] CVMFS is ok
[2025-07-22 10:26:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:26:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:26:34] Further information can be found at the LHC@home message board.
[2025-07-22 10:26:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:26:34] Checking for apptainer binary...
[2025-07-22 10:26:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:26:34] Running /usr/bin/apptainer --version
[2025-07-22 10:26:34] apptainer version 1.4.1-1.1
[2025-07-22 10:26:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:26:34] thA373
[2025-07-22 10:26:34] apptainer works
[2025-07-22 10:26:35] Set ATHENA_PROC_NUMBER=3
[2025-07-22 10:26:35] Set ATHENA_CORE_NUMBER=3
[2025-07-22 10:26:35] Starting ATLAS job with PandaID=6741945984
[2025-07-22 10:26:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 10:33:54]  *** The last 200 lines of the pilot log: ***
[2025-07-22 10:33:54]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:33:54]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:33:54]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:33:54]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:33:54] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fd4795f7cc0>)
[2025-07-22 10:33:54] Traceback (most recent call last):
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:33:54]     self._target(**self.kwargs)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 10:33:54]     if _stage_out_new(job, args):
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 10:33:54]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 10:33:54]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 10:33:54]     list_work_dir(workdir)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 10:33:54]     _, stdout, stderr = execute(cmd)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 10:33:54]     process = subprocess.Popen(
[2025-07-22 10:33:54]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:33:54]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:33:54]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:33:54]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:33:54] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:33:54] 
[2025-07-22 10:33:54] None
[2025-07-22 10:33:54] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 10:33:54] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:33:54] 2025-07-22 08:31:11,836 | INFO     | monitor loop #46: job 0:6741945984 is in state 'failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:11,836 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:33:54] 2025-07-22 08:31:12,765 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 10:33:54] 2025-07-22 08:31:14,340 | INFO     | monitor loop #47: job 0:6741945984 is in state 'failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:14,340 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:33:54] 2025-07-22 08:31:16,845 | INFO     | monitor loop #48: job 0:6741945984 is in state 'failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:16,845 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:33:54] 2025-07-22 08:31:19,349 | INFO     | monitor loop #49: job 0:6741945984 is in state 'failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:19,349 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:33:54] 2025-07-22 08:31:21,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:33:54] 2025-07-22 08:31:21,745 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 10:33:54] 2025-07-22 08:31:21,856 | INFO     | monitor loop #50: job 0:6741945984 is in state 'failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:21,856 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:33:54] 2025-07-22 08:31:21,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:33:54] 2025-07-22 08:31:21,856 | INFO     | will abort loop
[2025-07-22 10:33:54] 2025-07-22 08:31:21,944 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 10:33:54] 2025-07-22 08:31:21,944 | INFO     | aborting job 6741945984
[2025-07-22 10:33:54] 2025-07-22 08:31:22,412 | INFO     | all job control threads have been joined
[2025-07-22 10:33:54] 2025-07-22 08:31:22,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 10:33:54] 2025-07-22 08:31:22,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 10:33:54] 2025-07-22 08:31:22,576 | INFO     | all data control threads have been joined
[2025-07-22 10:33:54] 2025-07-22 08:31:22,742 | INFO     | all payload control threads have been joined
[2025-07-22 10:33:54] 2025-07-22 08:31:22,810 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:22,863 | INFO     | [job] validate thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:22,863 | INFO     | [job] job monitor thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:22,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 10:33:54] 2025-07-22 08:31:23,195 | INFO     | [payload] failed_post thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,245 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,417 | INFO     | [job] control thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,466 | INFO     | [data] copytool_in thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,582 | INFO     | [data] control thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,748 | INFO     | [payload] control thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,809 | INFO     | [payload] validate_post thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,845 | INFO     | [job] retrieve thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,883 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:23,917 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:26,904 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 10:33:54] 2025-07-22 08:31:42,849 | INFO     | job 6741945984 has state=failed
[2025-07-22 10:33:54] 2025-07-22 08:31:42,849 | INFO     | preparing for final server update for job 6741945984 in state='failed'
[2025-07-22 10:33:54] 2025-07-22 08:31:43,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 10:33:54] 2025-07-22 08:31:43,679 | INFO     | [monitor] control thread has ended
[2025-07-22 10:33:54] 2025-07-22 08:31:43,885 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:45,898 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:47,911 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:49,925 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:51,940 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:53,952 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:55,963 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:57,973 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:31:59,984 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:01,995 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:04,007 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:06,021 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:08,031 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:10,043 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:12,055 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:14,066 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:16,080 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:18,092 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:20,104 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:22,117 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:24,127 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:26,139 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:28,153 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:30,163 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:32,175 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:34,190 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:36,203 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:38,213 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:40,224 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:42,237 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:44,247 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:46,258 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:48,271 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:50,285 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:52,298 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:54,309 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:56,319 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:32:58,329 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:00,341 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:02,351 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:04,362 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:06,374 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:08,386 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:10,402 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:12,412 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:14,424 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:16,435 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:18,448 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:20,458 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:22,472 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:24,484 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:26,497 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:28,510 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:30,523 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:32,535 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:34,551 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:36,561 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:38,060 | INFO     | proceeding with final server update
[2025-07-22 10:33:54] 2025-07-22 08:33:38,060 | INFO     | this job has now completed (state=failed)
[2025-07-22 10:33:54] 2025-07-22 08:33:38,060 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 10:33:54] 2025-07-22 08:33:38,060 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 10:33:54] 2025-07-22 08:33:38,060 | INFO     | job 6741945984 has state 'failed' - writing heartbeat
[2025-07-22 10:33:54] 2025-07-22 08:33:38,061 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 10:33:54] 2025-07-22 08:33:38,061 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:33:54]     self._target(**self.kwargs)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:33:54]     update_server(job, args)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:33:54]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:33:54]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:33:54]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:33:54]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:33:54] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7fd47b4c4f80>)
[2025-07-22 10:33:54] Traceback (most recent call last):
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:33:54]     self._target(**self.kwargs)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:33:54]     update_server(job, args)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:33:54]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:33:54]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:33:54]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:33:54]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:33:54]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:33:54] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 10:33:54] 
[2025-07-22 10:33:54] None
[2025-07-22 10:33:54] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 10:33:54] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:33:54] 2025-07-22 08:33:38,574 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:40,585 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:42,597 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:44,608 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:46,620 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140550631769920)>', '<ExcThread(queue_monitor, started 140549709358848)>']
[2025-07-22 10:33:54] 2025-07-22 08:33:48,630 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140550631769920)>'])
[2025-07-22 10:33:54] 2025-07-22 08:33:53,659 | INFO     | all workflow threads have been joined
[2025-07-22 10:33:54] 2025-07-22 08:33:53,659 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 10:33:54] 2025-07-22 08:33:53,659 | INFO     | traces error code: 0
[2025-07-22 10:33:54] 2025-07-22 08:33:53,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  ==== pilot stdout END ====
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  ==== wrapper stdout RESUME ====
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  pilotpid: 104070
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  Pilot exit status: 0
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  pandaids: 
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  No supervise_pilot CHILD process found
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  Test setup, not cleaning
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  apfmon messages muted
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:33:54]  ==== wrapper stdout END ====
[2025-07-22 10:33:54] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 10:33:54]  ==== wrapper stderr END ====
[2025-07-22 10:33:54]  *** Error codes and diagnostics ***
[2025-07-22 10:33:54]  *** Listing of results directory ***
[2025-07-22 10:33:54] total 313968
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc    530466 Jul 22 04:46 pilot3.tar.gz
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc      5112 Jul 22 04:54 queuedata.json
[2025-07-22 10:33:54] -rwx------ 1 boinc boinc     36292 Jul 22 04:55 runpilot2-wrapper.sh
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc       100 Jul 22 10:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 10:33:54] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 10:26 run_atlas
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc       105 Jul 22 10:26 job.xml
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc 317526526 Jul 22 10:26 EVNT.45697521._000172.pool.root.1
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc    542910 Jul 22 10:26 input.tar.gz
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:26 start_atlas.sh
[2025-07-22 10:33:54] drwxrwx--x 2 boinc boinc      4096 Jul 22 10:26 shared
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:26 boinc_setup_complete
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc      6271 Jul 22 10:26 init_data.xml
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:26 boinc_lockfile
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc      2630 Jul 22 10:26 pandaJob.out
[2025-07-22 10:33:54] -rw------- 1 boinc boinc    976662 Jul 22 10:27 agis_schedconf.cvmfs.json
[2025-07-22 10:33:54] -rw------- 1 boinc boinc   1593055 Jul 22 10:27 agis_ddmendpoints.agis.ALL.json
[2025-07-22 10:33:54] drwx------ 4 boinc boinc      4096 Jul 22 10:27 pilot3
[2025-07-22 10:33:54] -rw------- 1 boinc boinc       736 Jul 22 10:30 heartbeat.json
[2025-07-22 10:33:54] -rw------- 1 boinc boinc        95 Jul 22 10:30 pilot_heartbeat.json
[2025-07-22 10:33:54] -rw------- 1 boinc boinc       964 Jul 22 10:31 memory_monitor_summary.json
[2025-07-22 10:33:54] drwxrwx--- 2 boinc boinc      4096 Jul 22 10:31 PanDA_Pilot-6741945984
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc      8192 Jul 22 10:33 boinc_mmap_file
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc        22 Jul 22 10:33 wrapper_checkpoint.txt
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc       523 Jul 22 10:33 boinc_task_state.xml
[2025-07-22 10:33:54] -rw------- 1 boinc boinc     54777 Jul 22 10:33 pilotlog.txt
[2025-07-22 10:33:54] -rw------- 1 boinc boinc     72497 Jul 22 10:33 log.45697523._004306.job.log.1
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc       428 Jul 22 10:33 runtime_log
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc      8610 Jul 22 10:33 runtime_log.err
[2025-07-22 10:33:54] -rw------- 1 boinc boinc       622 Jul 22 10:33 6ECMDmYLIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ8HLDm62vUNo.diag
[2025-07-22 10:33:54] -rw-r--r-- 1 boinc boinc     27918 Jul 22 10:33 stderr.txt
[2025-07-22 10:33:54] No HITS result produced
[2025-07-22 10:33:54]  *** Contents of shared directory: ***
[2025-07-22 10:33:54] total 310640
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc 317526526 Jul 22 10:26 ATLAS.root_0
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc    542910 Jul 22 10:26 input.tar.gz
[2025-07-22 10:33:54] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:26 start_atlas.sh
10:33:55 (4162594): run_atlas exited; CPU time 18.783579
10:33:55 (4162594): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>6ECMDmYLIy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ8HLDm62vUNo_1_r1456762801_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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