Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:18:59 (3170059): wrapper (7.7.26015): starting
10:18:59 (3170059): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 10:18:59] Arguments: --nthreads 3
[2025-07-22 10:18:59] Threads: 3
[2025-07-22 10:18:59] Checking for CVMFS
[2025-07-22 10:19:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 10:19:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 10:19:01] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 10:19:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 10:19:02] 2.9.2.0 2057221 8 31972 148614 3 1 8823014 36864001 0 130560 0 1 85.714 1293 4015 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 10:19:02] CVMFS is ok
[2025-07-22 10:19:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 10:19:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 10:19:02] Further information can be found at the LHC@home message board.
[2025-07-22 10:19:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 10:19:02] Checking for apptainer binary...
[2025-07-22 10:19:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 10:19:02] Running /usr/bin/apptainer --version
[2025-07-22 10:19:02] apptainer version 1.4.1-1.1
[2025-07-22 10:19:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 10:19:03] thA373
[2025-07-22 10:19:03] apptainer works
[2025-07-22 10:19:03] Set ATHENA_PROC_NUMBER=3
[2025-07-22 10:19:03] Set ATHENA_CORE_NUMBER=3
[2025-07-22 10:19:03] Starting ATLAS job with PandaID=6741946072
[2025-07-22 10:19:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 10:26:07]  *** The last 200 lines of the pilot log: ***
[2025-07-22 10:26:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:26:07] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f426cec5840>)
[2025-07-22 10:26:07] Traceback (most recent call last):
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:26:07]     self._target(**self.kwargs)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 10:26:07]     if _stage_out_new(job, args):
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 10:26:07]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 10:26:07]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 10:26:07]     list_work_dir(workdir)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 10:26:07]     _, stdout, stderr = execute(cmd)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 10:26:07]     process = subprocess.Popen(
[2025-07-22 10:26:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 10:26:07]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 10:26:07]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 10:26:07]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 10:26:07] OSError: [Errno 116] Stale file handle: '/bin/bash'
[2025-07-22 10:26:07] 
[2025-07-22 10:26:07] None
[2025-07-22 10:26:07] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 10:26:07] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:26:07] 2025-07-22 08:23:23,327 | INFO     | monitor loop #42: job 0:6741946072 is in state 'failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:23,327 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:26:07] 2025-07-22 08:23:23,566 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 116] Stale file handle: '/bin/bash'
[2025-07-22 10:26:07] 2025-07-22 08:23:25,834 | INFO     | monitor loop #43: job 0:6741946072 is in state 'failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:25,834 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:26:07] 2025-07-22 08:23:28,344 | INFO     | monitor loop #44: job 0:6741946072 is in state 'failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:28,344 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:26:07] 2025-07-22 08:23:30,848 | INFO     | monitor loop #45: job 0:6741946072 is in state 'failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:30,848 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:26:07] 2025-07-22 08:23:32,762 | INFO     | PID=3297249 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 10:26:07] 2025-07-22 08:23:32,763 | INFO     | .. there are 2 such processes running
[2025-07-22 10:26:07] 2025-07-22 08:23:32,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 10:26:07] 2025-07-22 08:23:32,986 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-22 10:26:07] 2025-07-22 08:23:32,986 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 10:26:07] 2025-07-22 08:23:32,986 | INFO     | aborting job 6741946072
[2025-07-22 10:26:07] 2025-07-22 08:23:33,378 | INFO     | monitor loop #46: job 0:6741946072 is in state 'failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:33,378 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 10:26:07] 2025-07-22 08:23:33,378 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:26:07] 2025-07-22 08:23:33,378 | INFO     | will abort loop
[2025-07-22 10:26:07] 2025-07-22 08:23:33,438 | INFO     | all data control threads have been joined
[2025-07-22 10:26:07] 2025-07-22 08:23:33,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 10:26:07] 2025-07-22 08:23:33,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 10:26:07] 2025-07-22 08:23:33,569 | INFO     | all job control threads have been joined
[2025-07-22 10:26:07] 2025-07-22 08:23:33,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 10:26:07] 2025-07-22 08:23:33,707 | WARNING  | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2025-07-22 10:26:07] 2025-07-22 08:23:33,712 | INFO     | all payload control threads have been joined
[2025-07-22 10:26:07] 2025-07-22 08:23:34,046 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,096 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,386 | INFO     | [job] job monitor thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,444 | INFO     | [data] control thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,547 | INFO     | [payload] validate_post thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,574 | INFO     | [job] control thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,718 | INFO     | [payload] control thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,813 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,814 | INFO     | [data] copytool_in thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:34,860 | INFO     | [job] retrieve thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:35,343 | INFO     | [payload] failed_post thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:35,384 | INFO     | [job] validate thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:36,990 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 10:26:07] 2025-07-22 08:23:54,810 | INFO     | job 6741946072 has state=failed
[2025-07-22 10:26:07] 2025-07-22 08:23:54,810 | INFO     | preparing for final server update for job 6741946072 in state='failed'
[2025-07-22 10:26:07] 2025-07-22 08:23:55,657 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 10:26:07] 2025-07-22 08:23:55,657 | INFO     | [monitor] control thread has ended
[2025-07-22 10:26:07] 2025-07-22 08:23:57,218 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:23:59,229 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:01,239 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:03,249 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:05,260 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:07,271 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:09,284 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:11,294 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:13,304 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:15,315 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:17,329 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:19,341 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:21,354 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:23,366 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:25,378 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:27,389 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:29,402 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:31,414 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:33,425 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:35,436 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:37,448 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:39,458 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:41,469 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:43,482 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:45,496 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:47,511 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:49,522 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:51,535 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:53,545 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:55,559 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:57,572 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:24:59,585 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:01,596 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:03,607 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:05,617 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:07,627 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:09,638 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:11,649 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:13,663 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:15,674 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:17,687 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:19,698 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:21,710 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:23,722 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:25,735 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:27,748 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:29,759 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:31,770 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:33,782 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:35,795 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:37,806 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:39,816 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:41,828 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:43,839 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:45,850 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:47,862 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:49,876 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | proceeding with final server update
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | this job has now completed (state=failed)
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | job 6741946072 has state 'failed' - writing heartbeat
[2025-07-22 10:26:07] 2025-07-22 08:25:50,027 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 10:26:07] 2025-07-22 08:25:50,028 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:26:07]     self._target(**self.kwargs)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:26:07]     update_server(job, args)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:26:07]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:26:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:26:07]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:26:07]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:26:07] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f426ea906c0>)
[2025-07-22 10:26:07] Traceback (most recent call last):
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 10:26:07]     self._target(**self.kwargs)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 10:26:07]     update_server(job, args)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 10:26:07]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 10:26:07]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 10:26:07]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 10:26:07]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 10:26:07]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 10:26:07] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 10:26:07] 
[2025-07-22 10:26:07] None
[2025-07-22 10:26:07] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 10:26:07] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 10:26:07] 2025-07-22 08:25:51,888 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:53,901 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:55,913 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:57,924 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:25:59,937 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139923359225664)>', '<ExcThread(queue_monitor, started 139922602170112)>']
[2025-07-22 10:26:07] 2025-07-22 08:26:01,948 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139923359225664)>'])
[2025-07-22 10:26:07] 2025-07-22 08:26:06,973 | INFO     | all workflow threads have been joined
[2025-07-22 10:26:07] 2025-07-22 08:26:06,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 10:26:07] 2025-07-22 08:26:06,973 | INFO     | traces error code: 0
[2025-07-22 10:26:07] 2025-07-22 08:26:06,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  ==== pilot stdout END ====
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  ==== wrapper stdout RESUME ====
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  pilotpid: 3297249
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  Pilot exit status: 0
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  pandaids: 
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  No supervise_pilot CHILD process found
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  Test setup, not cleaning
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  apfmon messages muted
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 10:26:07]  ==== wrapper stdout END ====
[2025-07-22 10:26:07] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 10:26:07]  ==== wrapper stderr END ====
[2025-07-22 10:26:07]  *** Error codes and diagnostics ***
[2025-07-22 10:26:07]  *** Listing of results directory ***
[2025-07-22 10:26:07] total 317172
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc    530466 Jul 22 04:46 pilot3.tar.gz
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc      5112 Jul 22 05:00 queuedata.json
[2025-07-22 10:26:07] -rwx------ 1 boinc boinc     36292 Jul 22 05:01 runpilot2-wrapper.sh
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc       100 Jul 22 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 10:26:07] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 10:18 run_atlas
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc       105 Jul 22 10:18 job.xml
[2025-07-22 10:26:07] -rw-r--r-- 2 boinc boinc 320812342 Jul 22 10:18 EVNT.45697521._000175.pool.root.1
[2025-07-22 10:26:07] -rw-r--r-- 2 boinc boinc    542912 Jul 22 10:18 input.tar.gz
[2025-07-22 10:26:07] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:18 start_atlas.sh
[2025-07-22 10:26:07] drwxrwx--x 2 boinc boinc      4096 Jul 22 10:18 shared
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:18 boinc_setup_complete
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc      6271 Jul 22 10:18 init_data.xml
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc         0 Jul 22 10:18 boinc_lockfile
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc      2634 Jul 22 10:19 pandaJob.out
[2025-07-22 10:26:07] -rw------- 1 boinc boinc    976662 Jul 22 10:20 agis_schedconf.cvmfs.json
[2025-07-22 10:26:07] -rw------- 1 boinc boinc   1593055 Jul 22 10:20 agis_ddmendpoints.agis.ALL.json
[2025-07-22 10:26:07] drwx------ 4 boinc boinc      4096 Jul 22 10:20 pilot3
[2025-07-22 10:26:07] -rw------- 1 boinc boinc       736 Jul 22 10:22 heartbeat.json
[2025-07-22 10:26:07] -rw------- 1 boinc boinc        95 Jul 22 10:23 pilot_heartbeat.json
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc       523 Jul 22 10:23 boinc_task_state.xml
[2025-07-22 10:26:07] -rw------- 1 boinc boinc       936 Jul 22 10:23 memory_monitor_summary.json
[2025-07-22 10:26:07] drwxrwx--- 2 boinc boinc      4096 Jul 22 10:23 PanDA_Pilot-6741946072
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc      8192 Jul 22 10:25 boinc_mmap_file
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc        22 Jul 22 10:25 wrapper_checkpoint.txt
[2025-07-22 10:26:07] -rw------- 1 boinc boinc     54567 Jul 22 10:26 pilotlog.txt
[2025-07-22 10:26:07] -rw------- 1 boinc boinc     72254 Jul 22 10:26 log.45697523._004394.job.log.1
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc       428 Jul 22 10:26 runtime_log
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc      8610 Jul 22 10:26 runtime_log.err
[2025-07-22 10:26:07] -rw------- 1 boinc boinc       623 Jul 22 10:26 XzJLDmZRIy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPLuKDmj6EsTo.diag
[2025-07-22 10:26:07] -rw-r--r-- 1 boinc boinc     27915 Jul 22 10:26 stderr.txt
[2025-07-22 10:26:08] No HITS result produced
[2025-07-22 10:26:08]  *** Contents of shared directory: ***
[2025-07-22 10:26:08] total 313844
[2025-07-22 10:26:08] -rw-r--r-- 2 boinc boinc 320812342 Jul 22 10:18 ATLAS.root_0
[2025-07-22 10:26:08] -rw-r--r-- 2 boinc boinc    542912 Jul 22 10:18 input.tar.gz
[2025-07-22 10:26:08] -rw-r--r-- 2 boinc boinc     15095 Jul 22 10:18 start_atlas.sh
10:26:09 (3170059): run_atlas exited; CPU time 18.574667
10:26:09 (3170059): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>XzJLDmZRIy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPLuKDmj6EsTo_1_r863111155_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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