Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:35:41 (588304): wrapper (7.7.26015): starting
00:35:41 (588304): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 00:35:41] Arguments: --nthreads 12
[2025-07-22 00:35:41] Threads: 12
[2025-07-22 00:35:41] Checking for CVMFS
[2025-07-22 00:35:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 00:35:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 00:35:41] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 00:35:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 00:35:42] 2.11.5.0 7364 29648 225356 148613 0 443 26049049 45568001 22172 130560 0 207704472 99.731 167582703 25625 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-22 00:35:42] CVMFS is ok
[2025-07-22 00:35:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 00:35:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 00:35:42] Further information can be found at the LHC@home message board.
[2025-07-22 00:35:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 00:35:42] Checking for apptainer binary...
[2025-07-22 00:35:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 00:35:42] Running /usr/bin/apptainer --version
[2025-07-22 00:35:42] apptainer version 1.4.1-1.el9
[2025-07-22 00:35:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 00:35:42] wns0080.triumf.lcg
[2025-07-22 00:35:42] apptainer works
[2025-07-22 00:35:42] Set ATHENA_PROC_NUMBER=12
[2025-07-22 00:35:42] Set ATHENA_CORE_NUMBER=12
[2025-07-22 00:35:42] Starting ATLAS job with PandaID=6741740392
[2025-07-22 00:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 00:40:15]  *** The last 200 lines of the pilot log: ***
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | WARNING  | wrong length of table data, x=[1753169821.0], y=[2260.0] (must be same and length>=4)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . Timing measurements:
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . get job = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . initial setup = 4 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload setup = 15 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-in = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload execution = 49 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-out = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . log creation = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 00:40:15] 2025-07-22 07:39:43,270 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741740392/pilotlog.txt
[2025-07-22 00:40:15] 2025-07-22 07:39:43,281 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-22 00:40:15] - Log from pilotlog.txt -
[2025-07-22 00:40:15] 2025-07-22 07:39:43,267 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741740392/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | INFO     | extracted standard info from prmon json
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | WARNING  | wrong length of table data, x=[1753169821.0], y=[2260.0] (must be same and length>=4)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . Timing measurements:
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . get job = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . initial setup = 4 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload setup = 15 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-in = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload execution = 49 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-out = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . log creation = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 00:40:15] 2025-07-22 07:39:43,270 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741740392/pilotlog.txt
[2025-07-22 00:40:15] 2025-07-22 07:39:43,281 | WARNING  | 
[2025-07-22 00:40:15] [begin log extracts]
[2025-07-22 00:40:15] - Log from pilotlog.txt -
[2025-07-22 00:40:15] 2025-07-22 07:39:43,267 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741740392/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | INFO     | extracted standard info from prmon json
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 00:40:15] 2025-07-22 07:39:43,268 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | WARNING  | wrong length of table data, x=[1753169821.0], y=[2260.0] (must be same and length>=4)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | could have reported an average CPU frequency of 2677 MHz (4 samples)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . Timing measurements:
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . get job = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . initial setup = 4 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload setup = 15 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-in = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . payload execution = 49 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . stage-out = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | . log creation = 0 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | ..............................
[2025-07-22 00:40:15] 2025-07-22 07:39:43,269 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-22 00:40:15] 2025-07-22 07:39:43,270 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741740392/pilotlog.txt
[2025-07-22 00:40:15] [end log extracts]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,282 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,282 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-22 00:40:15] 2025-07-22 07:39:43,337 | INFO     | 
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | job summary report
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | --------------------------------------------------
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | PanDA job id: 6741740392
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | task id: 45697453
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-22 00:37:28,813 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | pilot state: failed 
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | transexitcode: 65
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | exeerrorcode: 65
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | exitcode: 65
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | cpuconsumptiontime: 17 s
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | nevents: 0
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | neventsw: 0
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | pid: 615626
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | pgrp: 615626
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | corecount: 12
[2025-07-22 00:40:15] 2025-07-22 07:39:43,338 | INFO     | event service: False
[2025-07-22 00:40:15] 2025-07-22 07:39:43,339 | INFO     | sizes: {0: 2396736, 1: 2397589, 2: 2397617, 12: 2397879, 13: 2397907, 68: 2421312, 69: 2421416, 70: 2425764, 195: 2425902}
[2025-07-22 00:40:15] 2025-07-22 07:39:43,339 | INFO     | --------------------------------------------------
[2025-07-22 00:40:15] 2025-07-22 07:39:43,339 | INFO     | 
[2025-07-22 00:40:15] 2025-07-22 07:39:43,339 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-22 00:40:15] 2025-07-22 07:39:43,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,359 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 00:40:15] 2025-07-22 07:39:43,360 | INFO     | job 6741740392 has completed (purged errors)
[2025-07-22 00:40:15] 2025-07-22 07:39:43,360 | INFO     | overall cleanup function is called
[2025-07-22 00:40:15] 2025-07-22 07:39:44,366 | INFO     | --- collectZombieJob: --- 10, [615626]
[2025-07-22 00:40:15] 2025-07-22 07:39:44,366 | INFO     | zombie collector waiting for pid 615626
[2025-07-22 00:40:15] 2025-07-22 07:39:44,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 00:40:15] 2025-07-22 07:39:44,366 | INFO     | collected zombie processes
[2025-07-22 00:40:15] 2025-07-22 07:39:44,366 | INFO     | will attempt to kill all subprocesses of pid=615626
[2025-07-22 00:40:15] 2025-07-22 07:39:44,740 | INFO     | process IDs to be killed: [615626] (in reverse order)
[2025-07-22 00:40:15] 2025-07-22 07:39:44,915 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 00:40:15] 2025-07-22 07:39:44,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 00:40:15] 2025-07-22 07:39:44,932 | INFO     | did not find any defunct processes belonging to 615626
[2025-07-22 00:40:15] 2025-07-22 07:39:44,943 | INFO     | did not find any defunct processes belonging to 615626
[2025-07-22 00:40:15] 2025-07-22 07:39:44,944 | INFO     | ready for new job
[2025-07-22 00:40:15] 2025-07-22 07:39:44,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 00:40:15] 2025-07-22 07:39:44,945 | INFO     | ***************************************
[2025-07-22 00:40:15] 2025-07-22 07:39:44,945 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 00:40:15] 2025-07-22 07:39:44,945 | INFO     | ***************************************
[2025-07-22 00:40:15] 2025-07-22 07:39:44,945 | INFO     | 
[2025-07-22 00:40:15] 2025-07-22 07:39:44,947 | INFO     | architecture information:
[2025-07-22 00:40:15] 2025-07-22 07:39:44,947 | INFO     | executing command: cat /etc/os-release
[2025-07-22 00:40:15] 2025-07-22 07:39:44,960 | INFO     | cat /etc/os-release:
[2025-07-22 00:40:15] NAME="CentOS Linux"
[2025-07-22 00:40:15] VERSION="7 (Core)"
[2025-07-22 00:40:15] ID="centos"
[2025-07-22 00:40:15] ID_LIKE="rhel fedora"
[2025-07-22 00:40:15] VERSION_ID="7"
[2025-07-22 00:40:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 00:40:15] ANSI_COLOR="0;31"
[2025-07-22 00:40:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 00:40:15] HOME_URL="https://www.centos.org/"
[2025-07-22 00:40:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 00:40:15] 
[2025-07-22 00:40:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 00:40:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 00:40:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 00:40:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 00:40:15] 
[2025-07-22 00:40:15] 2025-07-22 07:39:44,960 | INFO     | ***************************************
[2025-07-22 00:40:15] 2025-07-22 07:39:45,465 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-22 00:40:15] 2025-07-22 07:39:45,569 | INFO     | sufficient remaining disk space (1696240500736 B)
[2025-07-22 00:40:15] 2025-07-22 07:39:45,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 00:40:15] 2025-07-22 07:39:45,569 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 00:40:15] 2025-07-22 07:39:45,569 | INFO     | update_server=False
[2025-07-22 00:40:15] 2025-07-22 07:39:45,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 00:40:15] 2025-07-22 07:39:45,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 00:40:15] 2025-07-22 07:39:45,570 | INFO     | aborting loop
[2025-07-22 00:40:15] 2025-07-22 07:39:45,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 00:40:15] 2025-07-22 07:39:46,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 00:40:15] 2025-07-22 07:39:46,287 | INFO     | all data control threads have been joined
[2025-07-22 00:40:15] 2025-07-22 07:39:46,293 | INFO     | all payload control threads have been joined
[2025-07-22 00:40:15] 2025-07-22 07:39:46,557 | INFO     | all job control threads have been joined
[2025-07-22 00:40:15] 2025-07-22 07:39:46,584 | INFO     | [job] job monitor thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:46,584 | INFO     | [job] retrieve thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:46,629 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:46,675 | INFO     | [job] validate thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:46,751 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,294 | INFO     | [data] control thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,300 | INFO     | [payload] control thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,343 | INFO     | [payload] validate_post thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,529 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,569 | INFO     | [job] control thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,651 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:47,888 | INFO     | [data] copytool_in thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:48,076 | INFO     | [payload] failed_post thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:48,086 | INFO     | [data] copytool_out thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:48,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 00:40:15] 2025-07-22 07:39:49,362 | INFO     | [job] queue monitor thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:49,578 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 00:40:15] 2025-07-22 07:39:50,679 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649968736064)>', '<ExcThread(monitor, started 139648915470080)>']
[2025-07-22 00:40:15] 2025-07-22 07:39:55,704 | INFO     | all workflow threads have been joined
[2025-07-22 00:40:15] 2025-07-22 07:39:55,705 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 00:40:15] 2025-07-22 07:39:55,705 | INFO     | traces error code: 0
[2025-07-22 00:40:15] 2025-07-22 07:39:55,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 00:40:15] 2025-07-22 07:40:14,922 | INFO     | PID=596127 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 00:40:15] 2025-07-22 07:40:14,922 | INFO     | .. there are 48 such processes running
[2025-07-22 00:40:15] 2025-07-22 07:40:14,922 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 00:40:15] 2025-07-22 07:40:14,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 00:40:15] 2025-07-22 07:40:14,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 00:40:15] 2025-07-22 07:40:14,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 00:40:15] 2025-07-22 07:40:14,923 | CRITICAL | thread 'MainThread' is not alive
[2025-07-22 00:40:15] 2025-07-22 07:40:14,923 | INFO     | [monitor] control thread has ended
[2025-07-22 00:40:15] 2025-07-22 07:40:15,075 [wrapper] ==== pilot stdout END ====
[2025-07-22 00:40:15] 2025-07-22 07:40:15,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 00:40:15] 2025-07-22 07:40:15,110 [wrapper] pilotpid: 596127
[2025-07-22 00:40:15] 2025-07-22 07:40:15,118 [wrapper] Pilot exit status: 0
[2025-07-22 00:40:15] 2025-07-22 07:40:15,159 [wrapper] pandaids: 6741740392
[2025-07-22 00:40:15] 2025-07-22 07:40:15,218 [wrapper] cleanup supervisor_pilot  596133 596128
[2025-07-22 00:40:15] 2025-07-22 07:40:15,221 [wrapper] Test setup, not cleaning
[2025-07-22 00:40:15] 2025-07-22 07:40:15,223 [wrapper] apfmon messages muted
[2025-07-22 00:40:15] 2025-07-22 07:40:15,224 [wrapper] ==== wrapper stdout END ====
[2025-07-22 00:40:15] 2025-07-22 07:40:15,226 [wrapper] ==== wrapper stderr END ====
[2025-07-22 00:40:15]  *** Error codes and diagnostics ***
[2025-07-22 00:40:15]     "exeErrorCode": 65,
[2025-07-22 00:40:15]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 00:40:15]     "pilotErrorCode": 1305,
[2025-07-22 00:40:15]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-22 00:40:15]  *** Listing of results directory ***
[2025-07-22 00:40:15] total 315596
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc    530466 Jul 21 21:38 pilot3.tar.gz
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc      5112 Jul 21 21:41 queuedata.json
[2025-07-22 00:40:15] -rwx------. 1 boinc boinc     36292 Jul 21 21:42 runpilot2-wrapper.sh
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc       100 Jul 22 00:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 00:40:15] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 00:35 run_atlas
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc       105 Jul 22 00:35 job.xml
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc      6596 Jul 22 00:35 init_data.xml
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc 319092779 Jul 22 00:35 EVNT.45697451._000201.pool.root.1
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc     15095 Jul 22 00:35 start_atlas.sh
[2025-07-22 00:40:15] drwxrwx--x. 2 boinc boinc      4096 Jul 22 00:35 shared
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc    542908 Jul 22 00:35 input.tar.gz
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc         0 Jul 22 00:35 boinc_lockfile
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc      2634 Jul 22 00:35 pandaJob.out
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc    977339 Jul 22 00:36 agis_schedconf.cvmfs.json
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc   1593055 Jul 22 00:36 agis_ddmendpoints.agis.ALL.json
[2025-07-22 00:40:15] drwx------. 4 boinc boinc      4096 Jul 22 00:36 pilot3
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc       990 Jul 22 00:37 memory_monitor_summary.json
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc     21612 Jul 22 00:37 log.45697453._005024.job.log.tgz.1
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc      8435 Jul 22 00:39 heartbeat.json
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc       524 Jul 22 00:40 boinc_task_state.xml
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc      8192 Jul 22 00:40 boinc_mmap_file
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc        22 Jul 22 00:40 wrapper_checkpoint.txt
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc        95 Jul 22 00:40 pilot_heartbeat.json
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc       892 Jul 22 00:40 pilotlog.txt
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc     79297 Jul 22 00:40 log.45697453._005024.job.log.1
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc       188 Jul 22 00:40 output.list
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc       620 Jul 22 00:40 runtime_log
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc    122880 Jul 22 00:40 result.tar.gz
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc      8485 Jul 22 00:40 runtime_log.err
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc       644 Jul 22 00:40 9VvMDma0Jy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0PILDmrkSdOo.diag
[2025-07-22 00:40:15] -rw-r--r--. 1 boinc boinc     21788 Jul 22 00:40 stderr.txt
[2025-07-22 00:40:15] No HITS result produced
[2025-07-22 00:40:15]  *** Contents of shared directory: ***
[2025-07-22 00:40:15] total 312288
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc 319092779 Jul 22 00:35 ATLAS.root_0
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc     15095 Jul 22 00:35 start_atlas.sh
[2025-07-22 00:40:15] -rw-r--r--. 2 boinc boinc    542908 Jul 22 00:35 input.tar.gz
[2025-07-22 00:40:15] -rw-------. 1 boinc boinc    122880 Jul 22 00:40 result.tar.gz
00:40:16 (588304): run_atlas exited; CPU time 25.928625
00:40:16 (588304): called boinc_finish(0)

</stderr_txt>
]]>

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