Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:08:34 (4101166): wrapper (7.7.26015): starting
02:08:34 (4101166): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 02:08:34] Arguments: --nthreads 8
[2025-07-22 02:08:34] Threads: 8
[2025-07-22 02:08:34] Checking for CVMFS
[2025-07-22 02:08:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 02:08:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 02:08:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 02:08:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 02:08:35] 2.13.1.0 665382 591 68004 148610 0 188 32511000 40960001 13169 16776704 0 8820759 99.999 21592 55937 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-22 02:08:35] CVMFS is ok
[2025-07-22 02:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 02:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 02:08:35] Further information can be found at the LHC@home message board.
[2025-07-22 02:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 02:08:35] Checking for apptainer binary...
[2025-07-22 02:08:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 02:08:35] Running /usr/bin/apptainer --version
[2025-07-22 02:08:35] apptainer version 1.4.1-1.el9
[2025-07-22 02:08:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 02:08:35] c-208-40.aglt2.org
[2025-07-22 02:08:35] apptainer works
[2025-07-22 02:08:35] Set ATHENA_PROC_NUMBER=8
[2025-07-22 02:08:35] Set ATHENA_CORE_NUMBER=8
[2025-07-22 02:08:35] Starting ATLAS job with PandaID=6741711968
[2025-07-22 02:08:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 03:19:21]  *** The last 200 lines of the pilot log: ***
[2025-07-22 03:19:21]  protocol_id=None
[2025-07-22 03:19:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 03:19:21]  replicas=None
[2025-07-22 03:19:21]  scope=mc23_13p6TeV
[2025-07-22 03:19:21]  status=None
[2025-07-22 03:19:21]  status_code=0
[2025-07-22 03:19:21]  storage_token=
[2025-07-22 03:19:21]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6741711968/log.45697453._003080.job.log.tgz.1
[2025-07-22 03:19:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/f7/log.45697453._003080.job.log.tgz.1
[2025-07-22 03:19:21]  workdir=None
[2025-07-22 03:19:21] ]
[2025-07-22 03:19:21] 2025-07-22 07:18:41,986 | INFO     | transferring file log.45697453._003080.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6741711968/log.45697453._003080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-22 03:19:21] 2025-07-22 07:18:41,986 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6741711968/log.45697453._003080.job.log.tgz.1 /tmp/boinchome/slots/1/log.45697453._003080.job
[2025-07-22 03:19:21] 2025-07-22 07:18:42,005 | INFO     | adding to output.list: log.45697453._003080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/f7/log.45697453._003080.job.log.tg
[2025-07-22 03:19:21] 2025-07-22 07:18:42,006 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 03:19:21] 2025-07-22 07:18:42,006 | INFO     | summary of transferred files:
[2025-07-22 03:19:21] 2025-07-22 07:18:42,006 | INFO     |  -- lfn=log.45697453._003080.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 03:19:21] 2025-07-22 07:18:42,006 | INFO     | stage-out finished correctly
[2025-07-22 03:19:21] 2025-07-22 07:18:42,025 | INFO     | monitor loop #307: job 0:6741711968 is in state 'finished'
[2025-07-22 03:19:21] 2025-07-22 07:18:42,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 03:19:21] 2025-07-22 07:18:44,312 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 03:19:21] 2025-07-22 07:18:44,559 | INFO     | monitor loop #308: job 0:6741711968 is in state 'finished'
[2025-07-22 03:19:21] 2025-07-22 07:18:44,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 03:19:21] 2025-07-22 07:18:45,416 | INFO     | job 6741711968 has state=finished
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | preparing for final server update for job 6741711968 in state='finished'
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | this job has now completed (state=finished)
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | log transfer has been attempted: DONE
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | job 6741711968 has finished - writing final server update
[2025-07-22 03:19:21] 2025-07-22 07:18:45,417 | INFO     | total number of processed events: 400 (read)
[2025-07-22 03:19:21] 2025-07-22 07:18:45,418 | INFO     | executing command: lscpu
[2025-07-22 03:19:21] 2025-07-22 07:18:45,474 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 03:19:21] 2025-07-22 07:18:47,063 | INFO     | monitor loop #309: job 0:6741711968 is in state 'finished'
[2025-07-22 03:19:21] 2025-07-22 07:18:47,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,377 | INFO     | PID=4104767 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 03:19:21] 2025-07-22 07:18:48,377 | INFO     | .. there are 15 such processes running
[2025-07-22 03:19:21] 2025-07-22 07:18:48,870 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-22 03:19:21] 2025-07-22 07:18:48,875 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3653.429640625004
[2025-07-22 03:19:21] 2025-07-22 07:18:48,889 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6741711968/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,889 | INFO     | extracted standard info from prmon json
[2025-07-22 03:19:21] 2025-07-22 07:18:48,890 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 03:19:21] 2025-07-22 07:18:48,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 03:19:21] 2025-07-22 07:18:48,890 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 03:19:21] 2025-07-22 07:18:48,890 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | fitting pss+swap vs Time
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | sum of square deviations: 73882315.5
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | sum of deviations: 552941545.5
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | mean x: 1753166712.5
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | mean y: 2558105.080645161
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | -- intersect: -13118290977.253601
[2025-07-22 03:19:21] 2025-07-22 07:18:48,891 | INFO     | intersect: -13118290977.253601
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | chi2: 0.0031113234986993124
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | -- intersect: -13118290977.253601
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | current memory leak: 7.48 B/s (using 62 data points, chi2=0.00)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | could have reported an average CPU frequency of 3731 MHz (6 samples)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | ..............................
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . Timing measurements:
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . get job = 0 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . initial setup = 2 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . payload setup = 5 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . stage-in = 0 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . payload execution = 4174 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . stage-out = 0 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | . log creation = 0 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,892 | INFO     | ..............................
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | 
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | job summary report
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | --------------------------------------------------
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | PanDA job id: 6741711968
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | task id: 45697453
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | errors: (none)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | pilot state: finished 
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | transexitcode: 0
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | exeerrorcode: 0
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | exeerrordiag: 
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | exitcode: 0
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | exitmsg: OK
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | cpuconsumptiontime: 30754 s
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | nevents: 400
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | neventsw: 0
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | pid: 4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | pgrp: 4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | corecount: 8
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | event service: False
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | sizes: {0: 2397564, 4: 2397826, 11: 2397854, 4183: 2423874, 4184: 2432927, 4186: 2432927, 4191: 2433249}
[2025-07-22 03:19:21] 2025-07-22 07:18:48,949 | INFO     | --------------------------------------------------
[2025-07-22 03:19:21] 2025-07-22 07:18:48,950 | INFO     | 
[2025-07-22 03:19:21] 2025-07-22 07:18:48,950 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-22 03:19:21] 2025-07-22 07:18:48,968 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,968 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,968 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,968 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | job 6741711968 has completed (purged errors)
[2025-07-22 03:19:21] 2025-07-22 07:18:48,969 | INFO     | overall cleanup function is called
[2025-07-22 03:19:21] 2025-07-22 07:18:49,977 | INFO     | --- collectZombieJob: --- 10, [4112653]
[2025-07-22 03:19:21] 2025-07-22 07:18:49,977 | INFO     | zombie collector waiting for pid 4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:49,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 03:19:21] 2025-07-22 07:18:49,977 | INFO     | collected zombie processes
[2025-07-22 03:19:21] 2025-07-22 07:18:49,977 | INFO     | will attempt to kill all subprocesses of pid=4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:50,332 | INFO     | process IDs to be killed: [4112653] (in reverse order)
[2025-07-22 03:19:21] 2025-07-22 07:18:50,447 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 03:19:21] 2025-07-22 07:18:50,447 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 03:19:21] 2025-07-22 07:18:50,463 | INFO     | did not find any defunct processes belonging to 4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:50,475 | INFO     | did not find any defunct processes belonging to 4112653
[2025-07-22 03:19:21] 2025-07-22 07:18:50,476 | INFO     | ready for new job
[2025-07-22 03:19:21] 2025-07-22 07:18:50,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 03:19:21] 2025-07-22 07:18:50,477 | INFO     | ***************************************
[2025-07-22 03:19:21] 2025-07-22 07:18:50,477 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 03:19:21] 2025-07-22 07:18:50,477 | INFO     | ***************************************
[2025-07-22 03:19:21] 2025-07-22 07:18:50,477 | INFO     | 
[2025-07-22 03:19:21] 2025-07-22 07:18:50,482 | INFO     | architecture information:
[2025-07-22 03:19:21] 2025-07-22 07:18:50,482 | INFO     | executing command: cat /etc/os-release
[2025-07-22 03:19:21] 2025-07-22 07:18:50,496 | INFO     | cat /etc/os-release:
[2025-07-22 03:19:21] NAME="CentOS Linux"
[2025-07-22 03:19:21] VERSION="7 (Core)"
[2025-07-22 03:19:21] ID="centos"
[2025-07-22 03:19:21] ID_LIKE="rhel fedora"
[2025-07-22 03:19:21] VERSION_ID="7"
[2025-07-22 03:19:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 03:19:21] ANSI_COLOR="0;31"
[2025-07-22 03:19:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 03:19:21] HOME_URL="https://www.centos.org/"
[2025-07-22 03:19:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 03:19:21] 
[2025-07-22 03:19:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 03:19:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 03:19:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 03:19:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 03:19:21] 
[2025-07-22 03:19:21] 2025-07-22 07:18:50,497 | INFO     | ***************************************
[2025-07-22 03:19:21] 2025-07-22 07:18:50,999 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | INFO     | sufficient remaining disk space (160109166592 B)
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | INFO     | update_server=False
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 03:19:21] 2025-07-22 07:18:51,014 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 03:19:21] 2025-07-22 07:18:51,015 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 03:19:21] 2025-07-22 07:18:51,015 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 03:19:21] 2025-07-22 07:18:51,015 | INFO     | aborting loop
[2025-07-22 03:19:21] 2025-07-22 07:18:51,484 | INFO     | all payload control threads have been joined
[2025-07-22 03:19:21] 2025-07-22 07:18:51,590 | INFO     | all data control threads have been joined
[2025-07-22 03:19:21] 2025-07-22 07:18:52,020 | INFO     | [job] retrieve thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,021 | INFO     | [job] job monitor thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,079 | INFO     | [payload] validate_post thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,196 | INFO     | all job control threads have been joined
[2025-07-22 03:19:21] 2025-07-22 07:18:52,279 | INFO     | [job] validate thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,302 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,379 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,453 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,490 | INFO     | [payload] control thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,596 | INFO     | [data] control thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:52,915 | INFO     | [data] copytool_in thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:53,016 | INFO     | [data] copytool_out thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:53,026 | INFO     | [payload] failed_post thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:53,202 | INFO     | [job] control thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:53,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 03:19:21] 2025-07-22 07:18:54,965 | INFO     | [job] queue monitor thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:18:55,021 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:19:01,871 | INFO     | job.realtimelogging is not enabled
[2025-07-22 03:19:21] 2025-07-22 07:19:02,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 03:19:21] 2025-07-22 07:19:04,418 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701989586752)>', '<ExcThread(monitor, started 140700905629440)>']
[2025-07-22 03:19:21] 2025-07-22 07:19:09,443 | INFO     | all workflow threads have been joined
[2025-07-22 03:19:21] 2025-07-22 07:19:09,443 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 03:19:21] 2025-07-22 07:19:09,443 | INFO     | traces error code: 0
[2025-07-22 03:19:21] 2025-07-22 07:19:09,443 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 03:19:21] 2025-07-22 07:19:20,854 | INFO     | PID=4104767 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | INFO     | .. there are 15 such processes running
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 03:19:21] 2025-07-22 07:19:20,855 | INFO     | [monitor] control thread has ended
[2025-07-22 03:19:21] 2025-07-22 07:19:20,944 [wrapper] ==== pilot stdout END ====
[2025-07-22 03:19:21] 2025-07-22 07:19:20,946 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 03:19:21] 2025-07-22 07:19:20,948 [wrapper] pilotpid: 4104767
[2025-07-22 03:19:21] 2025-07-22 07:19:20,951 [wrapper] Pilot exit status: 0
[2025-07-22 03:19:21] 2025-07-22 07:19:20,958 [wrapper] pandaids: 6741711968
[2025-07-22 03:19:21] 2025-07-22 07:19:21,035 [wrapper] cleanup supervisor_pilot  166862 4104768
[2025-07-22 03:19:21] 2025-07-22 07:19:21,037 [wrapper] Test setup, not cleaning
[2025-07-22 03:19:21] 2025-07-22 07:19:21,040 [wrapper] apfmon messages muted
[2025-07-22 03:19:21] 2025-07-22 07:19:21,043 [wrapper] ==== wrapper stdout END ====
[2025-07-22 03:19:21] 2025-07-22 07:19:21,045 [wrapper] ==== wrapper stderr END ====
[2025-07-22 03:19:21]  *** Error codes and diagnostics ***
[2025-07-22 03:19:21]     "exeErrorCode": 0,
[2025-07-22 03:19:21]     "exeErrorDiag": "",
[2025-07-22 03:19:21]     "pilotErrorCode": 0,
[2025-07-22 03:19:21]     "pilotErrorDiag": "",
[2025-07-22 03:19:21]  *** Listing of results directory ***
[2025-07-22 03:19:21] total 560940
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 21 21:48 pilot3.tar.gz
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 21 21:51 queuedata.json
[2025-07-22 03:19:21] -rwx------. 1 boincer umatlas     36292 Jul 21 21:52 runpilot2-wrapper.sh
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas       100 Jul 22 02:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 03:19:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 22 02:08 run_atlas
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas       105 Jul 22 02:08 job.xml
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas 316403828 Jul 22 02:08 EVNT.45697451._000124.pool.root.1
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 02:08 start_atlas.sh
[2025-07-22 03:19:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 22 02:08 shared
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas    542906 Jul 22 02:08 input.tar.gz
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas         0 Jul 22 02:08 boinc_lockfile
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas      2634 Jul 22 02:08 pandaJob.out
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas    977334 Jul 22 02:08 agis_schedconf.cvmfs.json
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas   1593055 Jul 22 02:08 agis_ddmendpoints.agis.ALL.json
[2025-07-22 03:19:21] drwx------. 4 boincer umatlas      4096 Jul 22 02:08 pilot3
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas 252701359 Jul 22 03:18 HITS.45697453._003080.pool.root.1
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas       529 Jul 22 03:18 boinc_task_state.xml
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas      1029 Jul 22 03:18 memory_monitor_summary.json
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas    293234 Jul 22 03:18 log.45697453._003080.job.log.tgz.1
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas      7767 Jul 22 03:18 heartbeat.json
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas      7171 Jul 22 03:19 init_data.xml
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas       823 Jul 22 03:19 pilotlog.txt
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas        95 Jul 22 03:19 pilot_heartbeat.json
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 03:19 boinc_mmap_file
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas    419688 Jul 22 03:19 log.45697453._003080.job.log.1
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas        27 Jul 22 03:19 wrapper_checkpoint.txt
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas       357 Jul 22 03:19 output.list
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas       620 Jul 22 03:19 runtime_log
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas    727040 Jul 22 03:19 result.tar.gz
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas       652 Jul 22 03:19 Z9xLDmTMHy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuvHLDmPY11vm.diag
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas      8660 Jul 22 03:19 runtime_log.err
[2025-07-22 03:19:21] -rw-r--r--. 1 boincer umatlas     21877 Jul 22 03:19 stderr.txt
[2025-07-22 03:19:21] HITS file was successfully produced:
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas 252701359 Jul 22 03:18 shared/HITS.pool.root.1
[2025-07-22 03:19:21]  *** Contents of shared directory: ***
[2025-07-22 03:19:21] total 557040
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas 316403828 Jul 22 02:08 ATLAS.root_0
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 22 02:08 start_atlas.sh
[2025-07-22 03:19:21] -rw-r--r--. 2 boincer umatlas    542906 Jul 22 02:08 input.tar.gz
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas 252701359 Jul 22 03:18 HITS.pool.root.1
[2025-07-22 03:19:21] -rw-------. 1 boincer umatlas    727040 Jul 22 03:19 result.tar.gz
03:19:23 (4101166): run_atlas exited; CPU time 30867.114906
03:19:23 (4101166): called boinc_finish(0)

</stderr_txt>
]]>

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