Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:33:08 (1564881): wrapper (7.7.26015): starting
23:33:08 (1564881): wrapper: running run_atlas (--nthreads 12)
[2025-07-21 23:33:08] Arguments: --nthreads 12
[2025-07-21 23:33:08] Threads: 12
[2025-07-21 23:33:08] Checking for CVMFS
[2025-07-21 23:33:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 23:33:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 23:33:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 23:33:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 23:33:09] 2.11.5.0 11019 17810 302996 148612 0 399 32282903 45568001 21633 130560 0 106977517 99.668 101902298 18805 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-21 23:33:09] CVMFS is ok
[2025-07-21 23:33:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 23:33:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 23:33:10] Further information can be found at the LHC@home message board.
[2025-07-21 23:33:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 23:33:10] Checking for apptainer binary...
[2025-07-21 23:33:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 23:33:10] Running /usr/bin/apptainer --version
[2025-07-21 23:33:10] apptainer version 1.4.1-1.el9
[2025-07-21 23:33:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 23:33:10] wns0042.triumf.lcg
[2025-07-21 23:33:10] apptainer works
[2025-07-21 23:33:10] Set ATHENA_PROC_NUMBER=12
[2025-07-21 23:33:10] Set ATHENA_CORE_NUMBER=12
[2025-07-21 23:33:10] Starting ATLAS job with PandaID=6741714720
[2025-07-21 23:33:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 23:38:27]  *** The last 200 lines of the pilot log: ***
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | WARNING  | wrong length of table data, x=[1753166087.0], y=[1785.0] (must be same and length>=4)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . Timing measurements:
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . get job = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . initial setup = 4 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload setup = 26 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-in = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload execution = 71 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-out = 1 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . log creation = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 23:38:27] 2025-07-22 06:37:54,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741714720/pilotlog.txt
[2025-07-21 23:38:27] 2025-07-22 06:37:55,014 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 23:38:27] - Log from pilotlog.txt -
[2025-07-21 23:38:27] 2025-07-22 06:37:54,933 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741714720/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,933 | INFO     | extracted standard info from prmon json
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | WARNING  | wrong length of table data, x=[1753166087.0], y=[1785.0] (must be same and length>=4)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . Timing measurements:
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . get job = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . initial setup = 4 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload setup = 26 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-in = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload execution = 71 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-out = 1 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . log creation = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 23:38:27] 2025-07-22 06:37:54,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741714720/pilotlog.txt
[2025-07-21 23:38:27] 2025-07-22 06:37:55,014 | WARNING  | 
[2025-07-21 23:38:27] [begin log extracts]
[2025-07-21 23:38:27] - Log from pilotlog.txt -
[2025-07-21 23:38:27] 2025-07-22 06:37:54,933 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741714720/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,933 | INFO     | extracted standard info from prmon json
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 23:38:27] 2025-07-22 06:37:54,934 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | WARNING  | wrong length of table data, x=[1753166087.0], y=[1785.0] (must be same and length>=4)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | could have reported an average CPU frequency of 2628 MHz (4 samples)
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . Timing measurements:
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . get job = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . initial setup = 4 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload setup = 26 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-in = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . payload execution = 71 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . stage-out = 1 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | . log creation = 0 s
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | ..............................
[2025-07-21 23:38:27] 2025-07-22 06:37:54,935 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 23:38:27] 2025-07-22 06:37:54,936 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741714720/pilotlog.txt
[2025-07-21 23:38:27] [end log extracts]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,014 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 23:38:27] 2025-07-22 06:37:55,015 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 23:38:27] 2025-07-22 06:37:55,228 | INFO     | 
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | job summary report
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | --------------------------------------------------
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | PanDA job id: 6741714720
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | task id: 45697453
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 23:35:30,956 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | pilot state: failed 
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | transexitcode: 65
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | exeerrorcode: 65
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | exitcode: 65
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | cpuconsumptiontime: 17 s
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | nevents: 0
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | neventsw: 0
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | pid: 1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | pgrp: 1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:55,229 | INFO     | corecount: 12
[2025-07-21 23:38:27] 2025-07-22 06:37:55,230 | INFO     | event service: False
[2025-07-21 23:38:27] 2025-07-22 06:37:55,230 | INFO     | sizes: {0: 2397560, 11: 2397850, 102: 2421116, 103: 2421092, 105: 2425412, 107: 2425440, 235: 2425734}
[2025-07-21 23:38:27] 2025-07-22 06:37:55,230 | INFO     | --------------------------------------------------
[2025-07-21 23:38:27] 2025-07-22 06:37:55,230 | INFO     | 
[2025-07-21 23:38:27] 2025-07-22 06:37:55,230 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | job 6741714720 has completed (purged errors)
[2025-07-21 23:38:27] 2025-07-22 06:37:55,248 | INFO     | overall cleanup function is called
[2025-07-21 23:38:27] 2025-07-22 06:37:56,255 | INFO     | --- collectZombieJob: --- 10, [1576596]
[2025-07-21 23:38:27] 2025-07-22 06:37:56,255 | INFO     | zombie collector waiting for pid 1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:56,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 23:38:27] 2025-07-22 06:37:56,255 | INFO     | collected zombie processes
[2025-07-21 23:38:27] 2025-07-22 06:37:56,255 | INFO     | will attempt to kill all subprocesses of pid=1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:56,822 | INFO     | process IDs to be killed: [1576596] (in reverse order)
[2025-07-21 23:38:27] 2025-07-22 06:37:57,258 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 23:38:27] 2025-07-22 06:37:57,258 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 23:38:27] 2025-07-22 06:37:57,301 | INFO     | did not find any defunct processes belonging to 1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:57,345 | INFO     | did not find any defunct processes belonging to 1576596
[2025-07-21 23:38:27] 2025-07-22 06:37:57,346 | INFO     | ready for new job
[2025-07-21 23:38:27] 2025-07-22 06:37:57,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 23:38:27] 2025-07-22 06:37:57,353 | INFO     | ***************************************
[2025-07-21 23:38:27] 2025-07-22 06:37:57,353 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 23:38:27] 2025-07-22 06:37:57,354 | INFO     | ***************************************
[2025-07-21 23:38:27] 2025-07-22 06:37:57,354 | INFO     | 
[2025-07-21 23:38:27] 2025-07-22 06:37:57,355 | INFO     | architecture information:
[2025-07-21 23:38:27] 2025-07-22 06:37:57,367 | INFO     | executing command: cat /etc/os-release
[2025-07-21 23:38:27] 2025-07-22 06:37:57,429 | INFO     | cat /etc/os-release:
[2025-07-21 23:38:27] NAME="CentOS Linux"
[2025-07-21 23:38:27] VERSION="7 (Core)"
[2025-07-21 23:38:27] ID="centos"
[2025-07-21 23:38:27] ID_LIKE="rhel fedora"
[2025-07-21 23:38:27] VERSION_ID="7"
[2025-07-21 23:38:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 23:38:27] ANSI_COLOR="0;31"
[2025-07-21 23:38:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 23:38:27] HOME_URL="https://www.centos.org/"
[2025-07-21 23:38:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 23:38:27] 
[2025-07-21 23:38:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 23:38:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 23:38:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 23:38:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 23:38:27] 
[2025-07-21 23:38:27] 2025-07-22 06:37:57,429 | INFO     | ***************************************
[2025-07-21 23:38:27] 2025-07-22 06:37:57,934 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 23:38:27] 2025-07-22 06:37:57,974 | INFO     | sufficient remaining disk space (1768049082368 B)
[2025-07-21 23:38:27] 2025-07-22 06:37:57,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 23:38:27] 2025-07-22 06:37:57,974 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 23:38:27] 2025-07-22 06:37:57,974 | INFO     | update_server=False
[2025-07-21 23:38:27] 2025-07-22 06:37:57,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 23:38:27] 2025-07-22 06:37:58,129 | INFO     | all job control threads have been joined
[2025-07-21 23:38:27] 2025-07-22 06:37:58,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 23:38:27] 2025-07-22 06:37:58,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 23:38:27] 2025-07-22 06:37:58,214 | INFO     | aborting loop
[2025-07-21 23:38:27] 2025-07-22 06:37:58,430 | INFO     | all data control threads have been joined
[2025-07-21 23:38:27] 2025-07-22 06:37:58,980 | INFO     | [job] retrieve thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,067 | INFO     | [data] copytool_in thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,079 | INFO     | [job] validate thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,082 | INFO     | all payload control threads have been joined
[2025-07-21 23:38:27] 2025-07-22 06:37:59,106 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,135 | INFO     | [job] control thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,220 | INFO     | [job] job monitor thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 23:38:27] 2025-07-22 06:37:59,380 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,436 | INFO     | [data] control thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,561 | INFO     | [payload] failed_post thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:37:59,582 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:00,087 | INFO     | [payload] control thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:00,176 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:00,202 | INFO     | [data] copytool_out thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:00,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 23:38:27] 2025-07-22 06:38:00,376 | INFO     | [payload] validate_post thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:01,252 | INFO     | [job] queue monitor thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:03,339 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 23:38:27] 2025-07-22 06:38:03,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239596570432)>', '<ExcThread(monitor, started 140238911424256)>']
[2025-07-21 23:38:27] 2025-07-22 06:38:08,609 | INFO     | all workflow threads have been joined
[2025-07-21 23:38:27] 2025-07-22 06:38:08,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 23:38:27] 2025-07-22 06:38:08,610 | INFO     | traces error code: 0
[2025-07-21 23:38:27] 2025-07-22 06:38:08,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 23:38:27] 2025-07-22 06:38:27,513 | INFO     | PID=1569048 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 23:38:27] 2025-07-22 06:38:27,513 | INFO     | .. there are 49 such processes running
[2025-07-21 23:38:27] 2025-07-22 06:38:27,513 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 23:38:27] 2025-07-22 06:38:27,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 23:38:27] 2025-07-22 06:38:27,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 23:38:27] 2025-07-22 06:38:27,514 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 23:38:27] 2025-07-22 06:38:27,514 | INFO     | [monitor] control thread has ended
[2025-07-21 23:38:27] 2025-07-22 06:38:27,629 [wrapper] ==== pilot stdout END ====
[2025-07-21 23:38:27] 2025-07-22 06:38:27,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 23:38:27] 2025-07-22 06:38:27,632 [wrapper] pilotpid: 1569048
[2025-07-21 23:38:27] 2025-07-22 06:38:27,634 [wrapper] Pilot exit status: 0
[2025-07-21 23:38:27] 2025-07-22 06:38:27,643 [wrapper] pandaids: 6741714720
[2025-07-21 23:38:27] 2025-07-22 06:38:27,701 [wrapper] cleanup supervisor_pilot 1569054 1569049
[2025-07-21 23:38:27] 2025-07-22 06:38:27,702 [wrapper] Test setup, not cleaning
[2025-07-21 23:38:27] 2025-07-22 06:38:27,705 [wrapper] apfmon messages muted
[2025-07-21 23:38:27] 2025-07-22 06:38:27,706 [wrapper] ==== wrapper stdout END ====
[2025-07-21 23:38:27] 2025-07-22 06:38:27,708 [wrapper] ==== wrapper stderr END ====
[2025-07-21 23:38:27]  *** Error codes and diagnostics ***
[2025-07-21 23:38:27]     "exeErrorCode": 65,
[2025-07-21 23:38:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 23:38:27]     "pilotErrorCode": 1305,
[2025-07-21 23:38:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 23:38:27]  *** Listing of results directory ***
[2025-07-21 23:38:27] total 315888
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc    530466 Jul 21 20:26 pilot3.tar.gz
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc      5112 Jul 21 20:46 queuedata.json
[2025-07-21 23:38:27] -rwx------. 1 boinc boinc     36292 Jul 21 20:47 runpilot2-wrapper.sh
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc       100 Jul 21 23:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 23:38:27] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 23:33 run_atlas
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc       105 Jul 21 23:33 job.xml
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc      6597 Jul 21 23:33 init_data.xml
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc 319386978 Jul 21 23:33 EVNT.45697451._000170.pool.root.1
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc     15095 Jul 21 23:33 start_atlas.sh
[2025-07-21 23:38:27] drwxrwx--x. 2 boinc boinc      4096 Jul 21 23:33 shared
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc    542905 Jul 21 23:33 input.tar.gz
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc         0 Jul 21 23:33 boinc_lockfile
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc      2633 Jul 21 23:33 pandaJob.out
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc    977326 Jul 21 23:33 agis_schedconf.cvmfs.json
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc   1593055 Jul 21 23:33 agis_ddmendpoints.agis.ALL.json
[2025-07-21 23:38:27] drwx------. 4 boinc boinc      4096 Jul 21 23:33 pilot3
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc       523 Jul 21 23:35 boinc_task_state.xml
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc       959 Jul 21 23:35 memory_monitor_summary.json
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc     21720 Jul 21 23:35 log.45697453._004242.job.log.tgz.1
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc        95 Jul 21 23:37 pilot_heartbeat.json
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc      8399 Jul 21 23:37 heartbeat.json
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc        22 Jul 21 23:38 wrapper_checkpoint.txt
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc      8192 Jul 21 23:38 boinc_mmap_file
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc       823 Jul 21 23:38 pilotlog.txt
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc     82044 Jul 21 23:38 log.45697453._004242.job.log.1
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc       188 Jul 21 23:38 output.list
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc       620 Jul 21 23:38 runtime_log
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc    122880 Jul 21 23:38 result.tar.gz
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc       644 Jul 21 23:38 VDiMDmR9Iy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4FILDmffSYTm.diag
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc      8485 Jul 21 23:38 runtime_log.err
[2025-07-21 23:38:27] -rw-r--r--. 1 boinc boinc     21797 Jul 21 23:38 stderr.txt
[2025-07-21 23:38:27] No HITS result produced
[2025-07-21 23:38:27]  *** Contents of shared directory: ***
[2025-07-21 23:38:27] total 312576
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc 319386978 Jul 21 23:33 ATLAS.root_0
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc     15095 Jul 21 23:33 start_atlas.sh
[2025-07-21 23:38:27] -rw-r--r--. 2 boinc boinc    542905 Jul 21 23:33 input.tar.gz
[2025-07-21 23:38:27] -rw-------. 1 boinc boinc    122880 Jul 21 23:38 result.tar.gz
23:38:29 (1564881): run_atlas exited; CPU time 27.293544
23:38:29 (1564881): called boinc_finish(0)

</stderr_txt>
]]>

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