Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:52:59 (459835): wrapper (7.7.26015): starting
22:52:59 (459835): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 22:52:59] Arguments: --nthreads 8
[2025-07-21 22:52:59] Threads: 8
[2025-07-21 22:52:59] Checking for CVMFS
[2025-07-21 22:52:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 22:53:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 22:53:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 22:53:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 22:53:01] 2.11.3.0 22626 471290 265924 148610 0 363 45511419 45568001 13440 130560 0 2441189406 99.755 1997288902 20137 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-21 22:53:01] CVMFS is ok
[2025-07-21 22:53:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 22:53:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 22:53:01] Further information can be found at the LHC@home message board.
[2025-07-21 22:53:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 22:53:01] Checking for apptainer binary...
[2025-07-21 22:53:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 22:53:01] Running /usr/bin/apptainer --version
[2025-07-21 22:53:01] apptainer version 1.3.3-1.el9
[2025-07-21 22:53:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 22:53:02] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0003.triumf.lcg
[2025-07-21 22:53:02] apptainer works
[2025-07-21 22:53:02] Set ATHENA_PROC_NUMBER=8
[2025-07-21 22:53:02] Set ATHENA_CORE_NUMBER=8
[2025-07-21 22:53:02] Starting ATLAS job with PandaID=6741949562
[2025-07-21 22:53:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 22:59:08]  *** The last 200 lines of the pilot log: ***
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | wrong length of table data, x=[1753163710.0, 1753163771.0], y=[1954.0, 465463.0] (must be same and length>=4)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . Timing measurements:
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . get job = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . initial setup = 5 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . payload setup = 23 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . stage-in = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . payload execution = 84 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . stage-out = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . log creation = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741949562/pilotlog.txt
[2025-07-21 22:59:08] 2025-07-22 05:58:34,116 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 22:59:08] - Log from pilotlog.txt -
[2025-07-21 22:59:08] 2025-07-22 05:58:33,963 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741949562/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | INFO     | extracted standard info from prmon json
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | wrong length of table data, x=[1753163710.0, 1753163771.0], y=[1954.0, 465463.0] (must be same and length>=4)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . Timing measurements:
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . get job = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . initial setup = 5 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . payload setup = 23 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . stage-in = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . payload execution = 84 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . stage-out = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . log creation = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741949562/pilotlog.txt
[2025-07-21 22:59:08] 2025-07-22 05:58:34,117 | WARNING  | 
[2025-07-21 22:59:08] [begin log extracts]
[2025-07-21 22:59:08] - Log from pilotlog.txt -
[2025-07-21 22:59:08] 2025-07-22 05:58:33,963 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741949562/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | INFO     | extracted standard info from prmon json
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 22:59:08] 2025-07-22 05:58:33,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | WARNING  | wrong length of table data, x=[1753163710.0, 1753163771.0], y=[1954.0, 465463.0] (must be same and length>=4)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 22:59:08] 2025-07-22 05:58:33,965 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . Timing measurements:
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . get job = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . initial setup = 5 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . payload setup = 23 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,966 | INFO     | . stage-in = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . payload execution = 84 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . stage-out = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | . log creation = 0 s
[2025-07-21 22:59:08] 2025-07-22 05:58:33,988 | INFO     | ..............................
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 22:59:08] 2025-07-22 05:58:33,989 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741949562/pilotlog.txt
[2025-07-21 22:59:08] [end log extracts]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,117 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 22:59:08] 2025-07-22 05:58:34,118 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 22:59:08] 2025-07-22 05:58:34,411 | INFO     | 
[2025-07-21 22:59:08] 2025-07-22 05:58:34,411 | INFO     | job summary report
[2025-07-21 22:59:08] 2025-07-22 05:58:34,411 | INFO     | --------------------------------------------------
[2025-07-21 22:59:08] 2025-07-22 05:58:34,411 | INFO     | PanDA job id: 6741949562
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | task id: 45697523
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 22:56:01,532 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | pilot state: failed 
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | transexitcode: 65
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | exeerrorcode: 65
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | exitcode: 65
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | cpuconsumptiontime: 18 s
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | nevents: 0
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | neventsw: 0
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | pid: 469768
[2025-07-21 22:59:08] 2025-07-22 05:58:34,412 | INFO     | pgrp: 469768
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | corecount: 8
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | event service: False
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | sizes: {0: 2397460, 1: 2397460, 11: 2397488, 17: 2397778, 23: 2397806, 112: 2420982, 113: 2425434, 116: 2425462, 246: 2425656}
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | --------------------------------------------------
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | 
[2025-07-21 22:59:08] 2025-07-22 05:58:34,413 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 22:59:08] 2025-07-22 05:58:34,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | job 6741949562 has completed (purged errors)
[2025-07-21 22:59:08] 2025-07-22 05:58:34,631 | INFO     | overall cleanup function is called
[2025-07-21 22:59:08] 2025-07-22 05:58:35,676 | INFO     | --- collectZombieJob: --- 10, [469768]
[2025-07-21 22:59:08] 2025-07-22 05:58:35,676 | INFO     | zombie collector waiting for pid 469768
[2025-07-21 22:59:08] 2025-07-22 05:58:35,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 22:59:08] 2025-07-22 05:58:35,676 | INFO     | collected zombie processes
[2025-07-21 22:59:08] 2025-07-22 05:58:35,676 | INFO     | will attempt to kill all subprocesses of pid=469768
[2025-07-21 22:59:08] 2025-07-22 05:58:36,722 | INFO     | process IDs to be killed: [469768] (in reverse order)
[2025-07-21 22:59:08] 2025-07-22 05:58:37,114 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 22:59:08] 2025-07-22 05:58:37,115 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 22:59:08] 2025-07-22 05:58:37,166 | INFO     | did not find any defunct processes belonging to 469768
[2025-07-21 22:59:08] 2025-07-22 05:58:37,196 | INFO     | did not find any defunct processes belonging to 469768
[2025-07-21 22:59:08] 2025-07-22 05:58:37,196 | INFO     | ready for new job
[2025-07-21 22:59:08] 2025-07-22 05:58:37,196 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 22:59:08] 2025-07-22 05:58:37,219 | INFO     | ***************************************
[2025-07-21 22:59:08] 2025-07-22 05:58:37,220 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 22:59:08] 2025-07-22 05:58:37,220 | INFO     | ***************************************
[2025-07-21 22:59:08] 2025-07-22 05:58:37,220 | INFO     | 
[2025-07-21 22:59:08] 2025-07-22 05:58:37,234 | INFO     | architecture information:
[2025-07-21 22:59:08] 2025-07-22 05:58:37,253 | INFO     | executing command: cat /etc/os-release
[2025-07-21 22:59:08] 2025-07-22 05:58:37,405 | INFO     | cat /etc/os-release:
[2025-07-21 22:59:08] NAME="CentOS Linux"
[2025-07-21 22:59:08] VERSION="7 (Core)"
[2025-07-21 22:59:08] ID="centos"
[2025-07-21 22:59:08] ID_LIKE="rhel fedora"
[2025-07-21 22:59:08] VERSION_ID="7"
[2025-07-21 22:59:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 22:59:08] ANSI_COLOR="0;31"
[2025-07-21 22:59:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 22:59:08] HOME_URL="https://www.centos.org/"
[2025-07-21 22:59:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 22:59:08] 
[2025-07-21 22:59:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 22:59:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 22:59:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 22:59:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 22:59:08] 
[2025-07-21 22:59:08] 2025-07-22 05:58:37,405 | INFO     | ***************************************
[2025-07-21 22:59:08] 2025-07-22 05:58:37,909 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 22:59:08] 2025-07-22 05:58:38,124 | INFO     | sufficient remaining disk space (1204915535872 B)
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | INFO     | update_server=False
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 22:59:08] 2025-07-22 05:58:38,125 | INFO     | aborting loop
[2025-07-21 22:59:08] 2025-07-22 05:58:38,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 22:59:08] 2025-07-22 05:58:38,348 | INFO     | all payload control threads have been joined
[2025-07-21 22:59:08] 2025-07-22 05:58:38,436 | INFO     | all data control threads have been joined
[2025-07-21 22:59:08] 2025-07-22 05:58:39,132 | INFO     | [job] retrieve thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,132 | INFO     | [job] job monitor thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,332 | INFO     | [job] validate thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,354 | INFO     | [payload] control thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 22:59:08] 2025-07-22 05:58:39,443 | INFO     | [data] control thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,482 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,502 | INFO     | [payload] validate_post thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,533 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,551 | INFO     | all job control threads have been joined
[2025-07-21 22:59:08] 2025-07-22 05:58:39,845 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:39,940 | INFO     | [data] copytool_in thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:40,151 | INFO     | [data] copytool_out thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:40,374 | INFO     | [payload] failed_post thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:40,427 | INFO     | [job] queue monitor thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:40,557 | INFO     | [job] control thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:42,138 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 22:59:08] 2025-07-22 05:58:42,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481384642368)>', '<ExcThread(monitor, started 140480813700864)>']
[2025-07-21 22:59:08] 2025-07-22 05:58:47,963 | INFO     | all workflow threads have been joined
[2025-07-21 22:59:08] 2025-07-22 05:58:47,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 22:59:08] 2025-07-22 05:58:47,963 | INFO     | traces error code: 0
[2025-07-21 22:59:08] 2025-07-22 05:58:47,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 22:59:08] 2025-07-22 05:59:07,191 | INFO     | PID=463426 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-21 22:59:08] 2025-07-22 05:59:07,191 | INFO     | .. there are 26 such processes running
[2025-07-21 22:59:08] 2025-07-22 05:59:07,202 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 22:59:08] 2025-07-22 05:59:07,202 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 22:59:08] 2025-07-22 05:59:07,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 22:59:08] 2025-07-22 05:59:07,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 22:59:08] 2025-07-22 05:59:07,203 | INFO     | [monitor] control thread has ended
[2025-07-21 22:59:08] 2025-07-22 05:59:07,353 [wrapper] ==== pilot stdout END ====
[2025-07-21 22:59:08] 2025-07-22 05:59:07,453 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 22:59:08] 2025-07-22 05:59:07,475 [wrapper] pilotpid: 463426
[2025-07-21 22:59:08] 2025-07-22 05:59:07,498 [wrapper] Pilot exit status: 0
[2025-07-21 22:59:08] 2025-07-22 05:59:07,624 [wrapper] pandaids: 6741949562
[2025-07-21 22:59:08] 2025-07-22 05:59:07,957 [wrapper] cleanup supervisor_pilot  463432 463427
[2025-07-21 22:59:08] 2025-07-22 05:59:07,978 [wrapper] Test setup, not cleaning
[2025-07-21 22:59:08] 2025-07-22 05:59:07,981 [wrapper] apfmon messages muted
[2025-07-21 22:59:08] 2025-07-22 05:59:07,982 [wrapper] ==== wrapper stdout END ====
[2025-07-21 22:59:08] 2025-07-22 05:59:07,984 [wrapper] ==== wrapper stderr END ====
[2025-07-21 22:59:08]  *** Error codes and diagnostics ***
[2025-07-21 22:59:08]     "exeErrorCode": 65,
[2025-07-21 22:59:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 22:59:08]     "pilotErrorCode": 1305,
[2025-07-21 22:59:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 22:59:08]  *** Listing of results directory ***
[2025-07-21 22:59:08] total 313064
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc    530466 Jul 21 20:01 pilot3.tar.gz
[2025-07-21 22:59:08] -rwx------. 1 boinc boinc     36292 Jul 21 20:24 runpilot2-wrapper.sh
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc      5112 Jul 21 20:24 queuedata.json
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc       100 Jul 21 22:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 22:59:08] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 22:52 run_atlas
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc       105 Jul 21 22:52 job.xml
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc      6448 Jul 21 22:52 init_data.xml
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc 316495772 Jul 21 22:52 EVNT.45697521._000139.pool.root.1
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc     15095 Jul 21 22:52 start_atlas.sh
[2025-07-21 22:59:08] drwxrwx--x. 2 boinc boinc      4096 Jul 21 22:52 shared
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc    542913 Jul 21 22:52 input.tar.gz
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc         0 Jul 21 22:52 boinc_lockfile
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc      2633 Jul 21 22:53 pandaJob.out
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc    977334 Jul 21 22:53 agis_schedconf.cvmfs.json
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc   1593055 Jul 21 22:53 agis_ddmendpoints.agis.ALL.json
[2025-07-21 22:59:08] drwx------. 4 boinc boinc      4096 Jul 21 22:53 pilot3
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc       525 Jul 21 22:55 boinc_task_state.xml
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc       980 Jul 21 22:56 memory_monitor_summary.json
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc     21561 Jul 21 22:56 log.45697523._004771.job.log.tgz.1
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc      8359 Jul 21 22:58 heartbeat.json
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc      8192 Jul 21 22:59 boinc_mmap_file
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc        23 Jul 21 22:59 wrapper_checkpoint.txt
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc       822 Jul 21 22:59 pilotlog.txt
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc        95 Jul 21 22:59 pilot_heartbeat.json
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc     83452 Jul 21 22:59 log.45697523._004771.job.log.1
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc       188 Jul 21 22:59 output.list
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc       620 Jul 21 22:59 runtime_log
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc    122880 Jul 21 22:59 result.tar.gz
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc      8648 Jul 21 22:59 runtime_log.err
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc       645 Jul 21 22:59 jCMLDmVnIy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5OuKDmyHpQMo.diag
[2025-07-21 22:59:08] -rw-r--r--. 1 boinc boinc     22043 Jul 21 22:59 stderr.txt
[2025-07-21 22:59:08] No HITS result produced
[2025-07-21 22:59:08]  *** Contents of shared directory: ***
[2025-07-21 22:59:08] total 309752
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc 316495772 Jul 21 22:52 ATLAS.root_0
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc     15095 Jul 21 22:52 start_atlas.sh
[2025-07-21 22:59:08] -rw-r--r--. 2 boinc boinc    542913 Jul 21 22:52 input.tar.gz
[2025-07-21 22:59:08] -rw-------. 1 boinc boinc    122880 Jul 21 22:59 result.tar.gz
22:59:10 (459835): run_atlas exited; CPU time 29.696014
22:59:10 (459835): called boinc_finish(0)

</stderr_txt>
]]>

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