Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:13:05 (3600344): wrapper (7.7.26015): starting
13:13:05 (3600344): wrapper: running run_atlas (--nthreads 12)
[2025-07-22 13:13:05] Arguments: --nthreads 12
[2025-07-22 13:13:05] Threads: 12
[2025-07-22 13:13:05] Checking for CVMFS
[2025-07-22 13:13:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 13:13:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 13:13:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 13:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 13:13:06] 2.13.1.0 8995 25590 251224 148619 1 196 35885226 46080001 7401 130560 0 236277154 99.902 62303398 23747 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-07-22 13:13:06] CVMFS is ok
[2025-07-22 13:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 13:13:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 13:13:06] Further information can be found at the LHC@home message board.
[2025-07-22 13:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 13:13:06] Checking for apptainer binary...
[2025-07-22 13:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 13:13:06] Running /usr/bin/apptainer --version
[2025-07-22 13:13:06] apptainer version 1.4.1-1.el9
[2025-07-22 13:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 13:13:06] mff2103.farm.particle.cz
[2025-07-22 13:13:06] apptainer works
[2025-07-22 13:13:06] Set ATHENA_PROC_NUMBER=12
[2025-07-22 13:13:06] Set ATHENA_CORE_NUMBER=12
[2025-07-22 13:13:06] Starting ATLAS job with PandaID=6741711255
[2025-07-22 13:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 14:34:49]  *** The last 200 lines of the pilot log: ***
[2025-07-22 14:34:49]  is_tar=False
[2025-07-22 14:34:49]  lfn=log.45697453._002462.job.log.tgz.1
[2025-07-22 14:34:49]  mtime=0
[2025-07-22 14:34:49]  protocol_id=None
[2025-07-22 14:34:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-22 14:34:49]  replicas=None
[2025-07-22 14:34:49]  scope=mc23_13p6TeV
[2025-07-22 14:34:49]  status=None
[2025-07-22 14:34:49]  status_code=0
[2025-07-22 14:34:49]  storage_token=
[2025-07-22 14:34:49]  surl=/scratch/.boinc/slots/1/PanDA_Pilot-6741711255/log.45697453._002462.job.log.tgz.1
[2025-07-22 14:34:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/38/log.45697453._002462.job.log.tgz.1
[2025-07-22 14:34:49]  workdir=None
[2025-07-22 14:34:49] ]
[2025-07-22 14:34:49] 2025-07-22 12:34:11,923 | INFO     | transferring file log.45697453._002462.job.log.tgz.1 from /scratch/.boinc/slots/1/PanDA_Pilot-6741711255/log.45697453._002462.job.log.tgz.1 to /scratch/.boinc/slot
[2025-07-22 14:34:49] 2025-07-22 12:34:11,924 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/1/PanDA_Pilot-6741711255/log.45697453._002462.job.log.tgz.1 /scratch/.boinc/slots/1/log.45697453._002462.j
[2025-07-22 14:34:49] 2025-07-22 12:34:11,949 | INFO     | adding to output.list: log.45697453._002462.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/38/log.45697453._002462.job.log.tg
[2025-07-22 14:34:49] 2025-07-22 12:34:11,950 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-22 14:34:49] 2025-07-22 12:34:11,950 | INFO     | summary of transferred files:
[2025-07-22 14:34:49] 2025-07-22 12:34:11,950 | INFO     |  -- lfn=log.45697453._002462.job.log.tgz.1, status_code=0, status=transferred
[2025-07-22 14:34:49] 2025-07-22 12:34:11,950 | INFO     | stage-out finished correctly
[2025-07-22 14:34:49] 2025-07-22 12:34:12,042 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-22 14:34:49] 2025-07-22 12:34:12,318 | INFO     | job 6741711255 has state=finished
[2025-07-22 14:34:49] 2025-07-22 12:34:12,319 | INFO     | preparing for final server update for job 6741711255 in state='finished'
[2025-07-22 14:34:49] 2025-07-22 12:34:12,319 | INFO     | this job has now completed (state=finished)
[2025-07-22 14:34:49] 2025-07-22 12:34:12,319 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 14:34:49] 2025-07-22 12:34:12,319 | INFO     | log transfer has been attempted: DONE
[2025-07-22 14:34:49] 2025-07-22 12:34:12,319 | INFO     | job 6741711255 has finished - writing final server update
[2025-07-22 14:34:49] 2025-07-22 12:34:12,320 | INFO     | total number of processed events: 400 (read)
[2025-07-22 14:34:49] 2025-07-22 12:34:12,321 | INFO     | executing command: lscpu
[2025-07-22 14:34:49] 2025-07-22 12:34:12,395 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-22 14:34:49] 2025-07-22 12:34:12,807 | INFO     | PID=3604355 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-22 14:34:49] 2025-07-22 12:34:12,807 | INFO     | .. there are 10 such processes running
[2025-07-22 14:34:49] 2025-07-22 12:34:12,970 | INFO     | monitor loop #346: job 0:6741711255 is in state 'finished'
[2025-07-22 14:34:49] 2025-07-22 12:34:12,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 14:34:49] 2025-07-22 12:34:15,474 | INFO     | monitor loop #347: job 0:6741711255 is in state 'finished'
[2025-07-22 14:34:49] 2025-07-22 12:34:15,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,701 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-22 14:34:49] 2025-07-22 12:34:16,714 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2775.422583333333
[2025-07-22 14:34:49] 2025-07-22 12:34:16,729 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6741711255/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,729 | INFO     | extracted standard info from prmon json
[2025-07-22 14:34:49] 2025-07-22 12:34:16,730 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 14:34:49] 2025-07-22 12:34:16,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 14:34:49] 2025-07-22 12:34:16,730 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 14:34:49] 2025-07-22 12:34:16,730 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 14:34:49] 2025-07-22 12:34:16,731 | INFO     | fitting pss+swap vs Time
[2025-07-22 14:34:49] 2025-07-22 12:34:16,731 | INFO     | sum of square deviations: 120605052.0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | sum of deviations: 332862299.0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | mean x: 1753185322.0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | mean y: 2783201.383561644
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | -- intersect: -4835897162.13865
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | intersect: -4835897162.13865
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | chi2: 0.002344914940573716
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | -- intersect: -4835897162.13865
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | current memory leak: 2.76 B/s (using 73 data points, chi2=0.00)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | could have reported an average CPU frequency of 2744 MHz (6 samples)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | ..............................
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | . Timing measurements:
[2025-07-22 14:34:49] 2025-07-22 12:34:16,732 | INFO     | . get job = 0 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . initial setup = 1 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . payload setup = 6 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . stage-in = 0 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . payload execution = 4831 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . stage-out = 0 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | . log creation = 0 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,733 | INFO     | ..............................
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | 
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | job summary report
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | --------------------------------------------------
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | PanDA job id: 6741711255
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | task id: 45697453
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | errors: (none)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 14:34:49] 2025-07-22 12:34:16,797 | INFO     | pilot state: finished 
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | transexitcode: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | exeerrorcode: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | exeerrordiag: 
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | exitcode: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | exitmsg: OK
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | cpuconsumptiontime: 52077 s
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | nevents: 400
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | neventsw: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | pid: 3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | pgrp: 3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:16,798 | INFO     | corecount: 12
[2025-07-22 14:34:49] 2025-07-22 12:34:16,799 | INFO     | event service: False
[2025-07-22 14:34:49] 2025-07-22 12:34:16,799 | INFO     | sizes: {0: 2397551, 1: 2397579, 4: 2397841, 11: 2397869, 4841: 2424273, 4842: 2433457, 4847: 2433595}
[2025-07-22 14:34:49] 2025-07-22 12:34:16,799 | INFO     | --------------------------------------------------
[2025-07-22 14:34:49] 2025-07-22 12:34:16,799 | INFO     | 
[2025-07-22 14:34:49] 2025-07-22 12:34:16,799 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,821 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,821 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,821 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 14:34:49] 2025-07-22 12:34:16,821 | INFO     | job 6741711255 has completed (purged errors)
[2025-07-22 14:34:49] 2025-07-22 12:34:16,821 | INFO     | overall cleanup function is called
[2025-07-22 14:34:49] 2025-07-22 12:34:17,830 | INFO     | --- collectZombieJob: --- 10, [3611570]
[2025-07-22 14:34:49] 2025-07-22 12:34:17,831 | INFO     | zombie collector waiting for pid 3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:17,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 14:34:49] 2025-07-22 12:34:17,831 | INFO     | collected zombie processes
[2025-07-22 14:34:49] 2025-07-22 12:34:17,831 | INFO     | will attempt to kill all subprocesses of pid=3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:18,139 | INFO     | process IDs to be killed: [3611570] (in reverse order)
[2025-07-22 14:34:49] 2025-07-22 12:34:18,224 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 14:34:49] 2025-07-22 12:34:18,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 14:34:49] 2025-07-22 12:34:18,237 | INFO     | did not find any defunct processes belonging to 3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:18,247 | INFO     | did not find any defunct processes belonging to 3611570
[2025-07-22 14:34:49] 2025-07-22 12:34:18,247 | INFO     | ready for new job
[2025-07-22 14:34:49] 2025-07-22 12:34:18,247 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 14:34:49] 2025-07-22 12:34:18,249 | INFO     | ***************************************
[2025-07-22 14:34:49] 2025-07-22 12:34:18,249 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 14:34:49] 2025-07-22 12:34:18,250 | INFO     | ***************************************
[2025-07-22 14:34:49] 2025-07-22 12:34:18,250 | INFO     | 
[2025-07-22 14:34:49] 2025-07-22 12:34:18,255 | INFO     | architecture information:
[2025-07-22 14:34:49] 2025-07-22 12:34:18,256 | INFO     | executing command: cat /etc/os-release
[2025-07-22 14:34:49] 2025-07-22 12:34:18,274 | INFO     | cat /etc/os-release:
[2025-07-22 14:34:49] NAME="CentOS Linux"
[2025-07-22 14:34:49] VERSION="7 (Core)"
[2025-07-22 14:34:49] ID="centos"
[2025-07-22 14:34:49] ID_LIKE="rhel fedora"
[2025-07-22 14:34:49] VERSION_ID="7"
[2025-07-22 14:34:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 14:34:49] ANSI_COLOR="0;31"
[2025-07-22 14:34:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 14:34:49] HOME_URL="https://www.centos.org/"
[2025-07-22 14:34:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 14:34:49] 
[2025-07-22 14:34:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 14:34:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 14:34:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 14:34:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 14:34:49] 
[2025-07-22 14:34:49] 2025-07-22 12:34:18,274 | INFO     | ***************************************
[2025-07-22 14:34:49] 2025-07-22 12:34:18,778 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-07-22 14:34:49] 2025-07-22 12:34:18,793 | INFO     | sufficient remaining disk space (1675854086144 B)
[2025-07-22 14:34:49] 2025-07-22 12:34:18,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 14:34:49] 2025-07-22 12:34:18,793 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 14:34:49] 2025-07-22 12:34:18,794 | INFO     | update_server=False
[2025-07-22 14:34:49] 2025-07-22 12:34:18,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 14:34:49] 2025-07-22 12:34:18,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 14:34:49] 2025-07-22 12:34:18,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 14:34:49] 2025-07-22 12:34:18,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 14:34:49] 2025-07-22 12:34:18,982 | INFO     | aborting loop
[2025-07-22 14:34:49] 2025-07-22 12:34:19,249 | INFO     | all data control threads have been joined
[2025-07-22 14:34:49] 2025-07-22 12:34:19,259 | INFO     | all job control threads have been joined
[2025-07-22 14:34:49] 2025-07-22 12:34:19,798 | INFO     | [job] retrieve thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:19,800 | INFO     | [job] queue monitor thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:19,977 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:19,988 | INFO     | [job] job monitor thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,053 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 14:34:49] 2025-07-22 12:34:20,177 | INFO     | [data] copytool_in thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,202 | INFO     | [payload] validate_post thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,248 | INFO     | all payload control threads have been joined
[2025-07-22 14:34:49] 2025-07-22 12:34:20,255 | INFO     | [data] control thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,265 | INFO     | [job] control thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,724 | INFO     | [job] validate thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,809 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:20,847 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:21,004 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:21,164 | INFO     | [payload] failed_post thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:21,254 | INFO     | [payload] control thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:22,058 | INFO     | [data] copytool_out thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:22,801 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 14:34:49] 2025-07-22 12:34:24,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513161217856)>', '<ExcThread(monitor, started 140512539440896)>']
[2025-07-22 14:34:49] 2025-07-22 12:34:29,927 | INFO     | all workflow threads have been joined
[2025-07-22 14:34:49] 2025-07-22 12:34:29,927 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 14:34:49] 2025-07-22 12:34:29,927 | INFO     | traces error code: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:29,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 14:34:49] 2025-07-22 12:34:49,167 | INFO     | PID=3604355 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | INFO     | .. there are 10 such processes running
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 14:34:49] 2025-07-22 12:34:49,168 | INFO     | [monitor] control thread has ended
[2025-07-22 14:34:49] 2025-07-22 12:34:49,246 [wrapper] ==== pilot stdout END ====
[2025-07-22 14:34:49] 2025-07-22 12:34:49,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 14:34:49] 2025-07-22 12:34:49,250 [wrapper] pilotpid: 3604355
[2025-07-22 14:34:49] 2025-07-22 12:34:49,252 [wrapper] Pilot exit status: 0
[2025-07-22 14:34:49] 2025-07-22 12:34:49,261 [wrapper] pandaids: 6741711255
[2025-07-22 14:34:49] 2025-07-22 12:34:49,321 [wrapper] cleanup supervisor_pilot 3760705 3604356
[2025-07-22 14:34:49] 2025-07-22 12:34:49,324 [wrapper] Test setup, not cleaning
[2025-07-22 14:34:49] 2025-07-22 12:34:49,326 [wrapper] apfmon messages muted
[2025-07-22 14:34:49] 2025-07-22 12:34:49,328 [wrapper] ==== wrapper stdout END ====
[2025-07-22 14:34:49] 2025-07-22 12:34:49,330 [wrapper] ==== wrapper stderr END ====
[2025-07-22 14:34:49]  *** Error codes and diagnostics ***
[2025-07-22 14:34:49]     "exeErrorCode": 0,
[2025-07-22 14:34:49]     "exeErrorDiag": "",
[2025-07-22 14:34:49]     "pilotErrorCode": 0,
[2025-07-22 14:34:49]     "pilotErrorDiag": "",
[2025-07-22 14:34:49]  *** Listing of results directory ***
[2025-07-22 14:34:49] total 570588
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc    530466 Jul 22 03:19 pilot3.tar.gz
[2025-07-22 14:34:49] -rwx------ 1 boinc boinc     36292 Jul 22 03:25 runpilot2-wrapper.sh
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc      5112 Jul 22 03:25 queuedata.json
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc       100 Jul 22 13:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 14:34:49] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 13:13 run_atlas
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc       105 Jul 22 13:13 job.xml
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc      6664 Jul 22 13:13 init_data.xml
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc 319191544 Jul 22 13:13 EVNT.45697451._000099.pool.root.1
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc     15095 Jul 22 13:13 start_atlas.sh
[2025-07-22 14:34:49] drwxrwx--x 2 boinc boinc      4096 Jul 22 13:13 shared
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc    542900 Jul 22 13:13 input.tar.gz
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc         0 Jul 22 13:13 boinc_lockfile
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc      2633 Jul 22 13:13 pandaJob.out
[2025-07-22 14:34:49] -rw------- 1 boinc boinc    976654 Jul 22 13:13 agis_schedconf.cvmfs.json
[2025-07-22 14:34:49] -rw------- 1 boinc boinc   1593031 Jul 22 13:13 agis_ddmendpoints.agis.ALL.json
[2025-07-22 14:34:49] drwx------ 4 boinc boinc      4096 Jul 22 13:13 pilot3
[2025-07-22 14:34:49] -rw------- 1 boinc boinc 259540654 Jul 22 14:33 HITS.45697453._002462.pool.root.1
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc       530 Jul 22 14:33 boinc_task_state.xml
[2025-07-22 14:34:49] -rw------- 1 boinc boinc      1023 Jul 22 14:34 memory_monitor_summary.json
[2025-07-22 14:34:49] -rw------- 1 boinc boinc    365243 Jul 22 14:34 log.45697453._002462.job.log.tgz.1
[2025-07-22 14:34:49] -rw------- 1 boinc boinc      7766 Jul 22 14:34 heartbeat.json
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc      8192 Jul 22 14:34 boinc_mmap_file
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc        27 Jul 22 14:34 wrapper_checkpoint.txt
[2025-07-22 14:34:49] -rw------- 1 boinc boinc       823 Jul 22 14:34 pilotlog.txt
[2025-07-22 14:34:49] -rw------- 1 boinc boinc        95 Jul 22 14:34 pilot_heartbeat.json
[2025-07-22 14:34:49] -rw------- 1 boinc boinc    470830 Jul 22 14:34 log.45697453._002462.job.log.1
[2025-07-22 14:34:49] -rw------- 1 boinc boinc       357 Jul 22 14:34 output.list
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc       620 Jul 22 14:34 runtime_log
[2025-07-22 14:34:49] -rw------- 1 boinc boinc    860160 Jul 22 14:34 result.tar.gz
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc      8721 Jul 22 14:34 runtime_log.err
[2025-07-22 14:34:49] -rw------- 1 boinc boinc       663 Jul 22 14:34 MJ3NDmdwGy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmd8tKDmMIrDwm.diag
[2025-07-22 14:34:49] -rw-r--r-- 1 boinc boinc     21673 Jul 22 14:34 stderr.txt
[2025-07-22 14:34:49] HITS file was successfully produced:
[2025-07-22 14:34:49] -rw------- 1 boinc boinc 259540654 Jul 22 14:33 shared/HITS.pool.root.1
[2025-07-22 14:34:49]  *** Contents of shared directory: ***
[2025-07-22 14:34:49] total 566568
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc 319191544 Jul 22 13:13 ATLAS.root_0
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc     15095 Jul 22 13:13 start_atlas.sh
[2025-07-22 14:34:49] -rw-r--r-- 2 boinc boinc    542900 Jul 22 13:13 input.tar.gz
[2025-07-22 14:34:49] -rw------- 1 boinc boinc 259540654 Jul 22 14:33 HITS.pool.root.1
[2025-07-22 14:34:49] -rw------- 1 boinc boinc    860160 Jul 22 14:34 result.tar.gz
14:34:51 (3600344): run_atlas exited; CPU time 52159.211627
14:34:51 (3600344): called boinc_finish(0)

</stderr_txt>
]]>

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