Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-22 12:26:57 (31596): Detected: vboxwrapper 26206
2025-07-22 12:26:57 (31596): Detected: BOINC client v7.14.2
2025-07-22 12:26:58 (31596): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2025-07-22 12:26:58 (31596): Successfully copied 'init_data.xml' to the shared directory.
2025-07-22 12:26:59 (31596): Create VM. (boinc_ccf167dd6c1364c9, slot#11)
2025-07-22 12:26:59 (31596): Setting Memory Size for VM. (4200MB)
2025-07-22 12:26:59 (31596): Setting CPU Count for VM. (2)
2025-07-22 12:27:00 (31596): Setting Chipset Options for VM.
2025-07-22 12:27:00 (31596): Setting Graphics Controller Options for VM.
2025-07-22 12:27:00 (31596): Setting Boot Options for VM.
2025-07-22 12:27:00 (31596): Setting Network Configuration for NAT.
2025-07-22 12:27:01 (31596): Enabling VM Network Access.
2025-07-22 12:27:01 (31596): Disabling USB Support for VM.
2025-07-22 12:27:01 (31596): Disabling COM Port Support for VM.
2025-07-22 12:27:01 (31596): Disabling LPT Port Support for VM.
2025-07-22 12:27:02 (31596): Disabling Audio Support for VM.
2025-07-22 12:27:02 (31596): Disabling Clipboard Support for VM.
2025-07-22 12:27:03 (31596): Disabling Drag and Drop Support for VM.
2025-07-22 12:27:04 (31596): Adding storage controller(s) to VM.
2025-07-22 12:27:04 (31596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-22 12:27:05 (31596): Adding VirtualBox Guest Additions to VM.
2025-07-22 12:27:05 (31596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-22 12:27:05 (31596): forwarding host port 60477 to guest port 80
2025-07-22 12:27:06 (31596): Enabling remote desktop for VM.
2025-07-22 12:27:06 (31596): Enabling shared directory for VM.
2025-07-22 12:27:07 (31596): Starting VM using VBoxManage interface. (boinc_ccf167dd6c1364c9, slot#11)
2025-07-22 12:27:16 (31596): Successfully started VM. (PID = '31428')
2025-07-22 12:27:16 (31596): Reporting VM Process ID to BOINC.
2025-07-22 12:27:16 (31596): Guest Log: BIOS: VirtualBox 6.1.40
2025-07-22 12:27:16 (31596): Guest Log: CPUID EDX: 0x178bfbff
2025-07-22 12:27:16 (31596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-22 12:27:16 (31596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-22 12:27:16 (31596): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-22 12:27:16 (31596): Detected: Web Application Enabled (http://localhost:60477)
2025-07-22 12:27:16 (31596): Detected: Remote Desktop Enabled (localhost:60478)
2025-07-22 12:27:16 (31596): Preference change detected
2025-07-22 12:27:16 (31596): Setting CPU throttle for VM. (100%)
2025-07-22 12:27:16 (31596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-22 12:27:18 (31596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-22 12:27:18 (31596): Guest Log: BIOS: Booting from Hard Disk...
2025-07-22 12:27:21 (31596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-22 12:27:21 (31596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-22 12:27:21 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-22 12:27:26 (31596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-22 12:27:26 (31596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-22 12:27:34 (31596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000205 main     Log opened 2025-07-22T12:27:32.168472000Z
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000313 main     OS Product: Linux
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000357 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000388 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000418 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000419 main     Process ID: 1262
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.000420 main     Package type: LINUX_64BITS_GENERIC
2025-07-22 12:27:34 (31596): Guest Log: 00:00:00.001128 main     5.2.32 r132073 started. Verbose level = 0
2025-07-22 12:27:34 (31596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-22 12:27:34 (31596): Guest Log: [INFO] Mounting shared directory
2025-07-22 12:27:34 (31596): Guest Log: [INFO] Checking for init_data.xml
2025-07-22 12:27:37 (31596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-22 12:27:37 (31596): Guest Log: [INFO] Detected branch: prod
2025-07-22 12:27:37 (31596): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-22 12:27:37 (31596): Guest Log: Copying input files
2025-07-22 12:27:39 (31596): Guest Log: Copied input files into RunAtlas.
2025-07-22 12:27:39 (31596): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-22 12:27:39 (31596): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-22 12:27:39 (31596): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-22 12:27:39 (31596): Guest Log: Further information can be found at the LHC@home message board.
2025-07-22 12:27:44 (31596): Guest Log: 00:00:10.016625 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 437 996 000ns (GuestNow=1 753 201 663 610 410 000 ns GuestLast=1 753 187 252 172 414 000 ns fSetTimeLastLoop=true )
2025-07-22 12:27:50 (31596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-22 12:27:51 (31596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-22 12:27:51 (31596): Guest Log: 2.6.3.0 1541 0 32104 148627 3 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-22 12:27:52 (31596): Guest Log: copied the webapp to /var/www
2025-07-22 12:27:52 (31596): Guest Log: ATHENA_PROC_NUMBER=2
2025-07-22 12:27:52 (31596): Guest Log: ATHENA_CORE_NUMBER=2
2025-07-22 12:27:52 (31596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-22 12:27:52 (31596): Guest Log:  *** Starting ATLAS job. (PandaID=6741710471 taskID=45697453) ***
2025-07-22 14:07:44 (31596): Status Report: Elapsed Time: '6000.000000'
2025-07-22 14:07:44 (31596): Status Report: CPU Time: '11484.515625'
2025-07-22 15:48:25 (31596): Status Report: Elapsed Time: '12000.020885'
2025-07-22 15:48:25 (31596): Status Report: CPU Time: '23466.593750'
2025-07-22 17:28:51 (31596): Status Report: Elapsed Time: '18000.020885'
2025-07-22 17:28:51 (31596): Status Report: CPU Time: '35436.859375'
2025-07-22 19:09:04 (31596): Status Report: Elapsed Time: '24000.020885'
2025-07-22 19:09:04 (31596): Status Report: CPU Time: '47387.140625'
2025-07-22 20:49:16 (31596): Status Report: Elapsed Time: '30000.020885'
2025-07-22 20:49:16 (31596): Status Report: CPU Time: '59334.750000'
2025-07-22 22:29:28 (31596): Status Report: Elapsed Time: '36000.020885'
2025-07-22 22:29:28 (31596): Status Report: CPU Time: '71285.781250'
2025-07-22 22:58:50 (31596): Guest Log:  *** Job finished ***
2025-07-22 22:58:50 (31596): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:37,135 | INFO     | end of generic workflow (traces error code: 0)
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:37,135 | INFO     | traces error code: 0
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:37,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:38,356 [wrapper] supervise_pilot (15 min periods counter: 43)
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,961 | INFO     | PID=5838 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,962 | INFO     | found 0 job(s) in 20 queues
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:49,962 | INFO     | [monitor] control thread has ended
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,069 [wrapper] ==== pilot stdout END ====
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,076 [wrapper] ==== wrapper stdout RESUME ====
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,082 [wrapper] pilotpid: 5838
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,088 [wrapper] Pilot exit status: 0
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,135 [wrapper] pandaids: 6741710471
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,164 [wrapper] cleanup supervisor_pilot 23868 5839
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,169 [wrapper] Test setup, not cleaning
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,175 [wrapper] apfmon messages muted
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,180 [wrapper] ==== wrapper stdout END ====
2025-07-22 22:58:50 (31596): Guest Log: 2025-07-23 02:58:50,186 [wrapper] ==== wrapper stderr END ====
2025-07-22 22:58:50 (31596): Guest Log:  *** Error codes and diagnostics ***
2025-07-22 22:58:50 (31596): Guest Log:     "exeErrorCode": 0,
2025-07-22 22:58:50 (31596): Guest Log:     "exeErrorDiag": "",
2025-07-22 22:58:50 (31596): Guest Log:     "pilotErrorCode": 0,
2025-07-22 22:58:50 (31596): Guest Log:     "pilotErrorDiag": "",
2025-07-22 22:58:50 (31596): Guest Log:  *** Listing of results directory ***
2025-07-22 22:58:50 (31596): Guest Log: total 267552
2025-07-22 22:58:50 (31596): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 22 00:55 pilot3.tar.gz
2025-07-22 22:58:50 (31596): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 22 00:58 runpilot2-wrapper.sh
2025-07-22 22:58:50 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 22 00:59 queuedata.json
2025-07-22 22:58:50 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas      9013 Jul 22 16:27 init_data.xml
2025-07-22 22:58:50 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas    542905 Jul 22 16:27 input.tar.gz
2025-07-22 22:58:50 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 22 16:27 start_atlas.sh
2025-07-22 22:58:50 (31596): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 22 16:27 EVNT.45697451._000080.pool.root.1 -> /data/./ATLAS.root_0
2025-07-22 22:58:50 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      2633 Jul 22 16:27 pandaJob.out
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas    977696 Jul 22 16:28 agis_schedconf.cvmfs.json
2025-07-22 22:58:50 (31596): Guest Log: drwx------. 4 atlas atlas      4096 Jul 22 16:28 pilot3
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas 262710332 Jul 23 02:57 HITS.45697453._001955.pool.root.1
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas        95 Jul 23 02:57 pilot_heartbeat.json
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas      1026 Jul 23 02:58 memory_monitor_summary.json
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas   1593031 Jul 23 02:58 agis_ddmendpoints.agis.ALL.json
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas    486945 Jul 23 02:58 log.45697453._001955.job.log.tgz.1
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas      7810 Jul 23 02:58 heartbeat.json
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas       744 Jul 23 02:58 pilotlog.txt
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas   3245161 Jul 23 02:58 log.45697453._001955.job.log.1
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas       357 Jul 23 02:58 output.list
2025-07-22 22:58:50 (31596): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 23 02:58 runtime_log
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas   3747840 Jul 23 02:58 result.tar.gz
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas       653 Jul 23 02:58 Y2cMDmUWGy7n9Rq4apOajLDm4fhM0noT9bVof3QYDm33tKDmdAeeom.diag
2025-07-22 22:58:50 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      8579 Jul 23 02:58 runtime_log.err
2025-07-22 22:58:50 (31596): Guest Log: Looking for outputfile HITS.45697453._001955.pool.root.1
2025-07-22 22:58:50 (31596): Guest Log: HITS file was successfully produced
2025-07-22 22:58:50 (31596): Guest Log: -rw-------. 1 atlas atlas 262710332 Jul 23 02:57 /home/atlas/RunAtlas/HITS.45697453._001955.pool.root.1
2025-07-22 22:58:52 (31596): Guest Log: Successfully finished the ATLAS job!
2025-07-22 22:58:52 (31596): Guest Log: Copying the results back to the shared directory!
2025-07-22 22:58:52 (31596): Guest Log:  *** Contents of shared directory: ***
2025-07-22 22:58:52 (31596): Guest Log: total 575824
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root 322607054 Jul 22 16:26 ATLAS.root_0
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root 262710332 Jul 23 02:58 HITS.pool.root.1
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root      9013 Jul 22 16:26 init_data.xml
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root    542905 Jul 22 04:52 input.tar.gz
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root   3747840 Jul 23 02:58 result.tar.gz
2025-07-22 22:58:52 (31596): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 22 04:52 start_atlas.sh
2025-07-22 22:58:52 (31596): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-22 22:58:52 (31596): VM Completion File Detected.
2025-07-22 22:58:52 (31596): Powering off VM.
2025-07-22 22:58:53 (31596): Successfully stopped VM.
2025-07-22 22:58:53 (31596): Deregistering VM. (boinc_ccf167dd6c1364c9, slot#11)
2025-07-22 22:58:53 (31596): Removing network bandwidth throttle group from VM.
2025-07-22 22:58:54 (31596): Removing VM from VirtualBox.
22:58:59 (31596): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN