Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-22 03:59:59 (8492): Detected: vboxwrapper 26206
2025-07-22 03:59:59 (8492): Detected: BOINC client v7.16.20
2025-07-22 04:00:02 (8492): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-07-22 04:00:03 (8492): Successfully copied 'init_data.xml' to the shared directory.
2025-07-22 04:00:03 (8492): Create VM. (boinc_cf51c4f47310b1ff, slot#0)
2025-07-22 04:00:04 (8492): Setting Memory Size for VM. (4400MB)
2025-07-22 04:00:04 (8492): Setting CPU Count for VM. (4)
2025-07-22 04:00:05 (8492): Setting Chipset Options for VM.
2025-07-22 04:00:05 (8492): Setting Graphics Controller Options for VM.
2025-07-22 04:00:05 (8492): Setting Boot Options for VM.
2025-07-22 04:00:05 (8492): Setting Network Configuration for NAT.
2025-07-22 04:00:06 (8492): Enabling VM Network Access.
2025-07-22 04:00:06 (8492): Disabling USB Support for VM.
2025-07-22 04:00:06 (8492): Disabling COM Port Support for VM.
2025-07-22 04:00:07 (8492): Disabling LPT Port Support for VM.
2025-07-22 04:00:07 (8492): Disabling Audio Support for VM.
2025-07-22 04:00:07 (8492): Disabling Clipboard Support for VM.
2025-07-22 04:00:07 (8492): Disabling Drag and Drop Support for VM.
2025-07-22 04:00:08 (8492): Adding storage controller(s) to VM.
2025-07-22 04:00:08 (8492): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-22 04:00:12 (8492): Adding VirtualBox Guest Additions to VM.
2025-07-22 04:00:14 (8492): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-22 04:00:15 (8492): forwarding host port 56754 to guest port 80
2025-07-22 04:00:17 (8492): Enabling remote desktop for VM.
2025-07-22 04:00:18 (8492): Required extension pack not installed, remote desktop not enabled.
2025-07-22 04:00:18 (8492): Enabling shared directory for VM.
2025-07-22 04:00:20 (8492): Starting VM using VBoxManage interface. (boinc_cf51c4f47310b1ff, slot#0)
2025-07-22 04:00:27 (8492): Successfully started VM. (PID = '13920')
2025-07-22 04:00:27 (8492): Reporting VM Process ID to BOINC.
2025-07-22 04:00:27 (8492): Guest Log: BIOS: VirtualBox 6.1.32
2025-07-22 04:00:27 (8492): Guest Log: CPUID EDX: 0x178bfbff
2025-07-22 04:00:27 (8492): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-22 04:00:27 (8492): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-22 04:00:27 (8492): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-22 04:00:27 (8492): Detected: Web Application Enabled (http://localhost:56754)
2025-07-22 04:00:27 (8492): Preference change detected
2025-07-22 04:00:27 (8492): Setting CPU throttle for VM. (50%)
2025-07-22 04:00:28 (8492): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-22 04:00:29 (8492): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-22 04:00:29 (8492): Guest Log: BIOS: Booting from Hard Disk...
2025-07-22 04:01:11 (8492): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-22 04:01:11 (8492): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-22 04:01:11 (8492): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-22 04:01:24 (8492): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-22 04:01:24 (8492): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-22 04:01:43 (8492): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000395 main     Log opened 2025-07-22T04:01:39.459816000Z
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000621 main     OS Product: Linux
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000742 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000808 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000863 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000864 main     Process ID: 1270
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.000865 main     Package type: LINUX_64BITS_GENERIC
2025-07-22 04:01:43 (8492): Guest Log: 00:00:00.002462 main     5.2.32 r132073 started. Verbose level = 0
2025-07-22 04:01:43 (8492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-22 04:01:43 (8492): Guest Log: [INFO] Mounting shared directory
2025-07-22 04:01:43 (8492): Guest Log: [INFO] Checking for init_data.xml
2025-07-22 04:01:53 (8492): Guest Log: 00:00:10.008553 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 161 457 000ns (GuestNow=1 753 171 311 625 623 000 ns GuestLast=1 753 156 899 464 166 000 ns fSetTimeLastLoop=true )
2025-07-22 04:03:43 (8492): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-22 04:03:43 (8492): Guest Log: [INFO] Detected branch: prod
2025-07-22 04:03:45 (8492): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-22 04:03:45 (8492): Guest Log: Copying input files
2025-07-22 04:03:51 (8492): Guest Log: Copied input files into RunAtlas.
2025-07-22 04:03:51 (8492): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-22 04:03:51 (8492): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-22 04:03:51 (8492): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-22 04:03:51 (8492): Guest Log: Further information can be found at the LHC@home message board.
2025-07-22 04:05:53 (8492): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-22 04:05:56 (8492): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-22 04:05:56 (8492): Guest Log: 2.6.3.0 1589 3 32188 148613 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-22 04:05:59 (8492): Guest Log: copied the webapp to /var/www
2025-07-22 04:05:59 (8492): Guest Log: ATHENA_PROC_NUMBER=4
2025-07-22 04:05:59 (8492): Guest Log: ATHENA_CORE_NUMBER=4
2025-07-22 04:06:01 (8492): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-22 04:06:01 (8492): Guest Log:  *** Starting ATLAS job. (PandaID=6741801426 taskID=45697532) ***
2025-07-22 05:40:29 (8492): Status Report: Elapsed Time: '6000.189001'
2025-07-22 05:40:29 (8492): Status Report: CPU Time: '10531.814711'
2025-07-22 07:20:31 (8492): Status Report: Elapsed Time: '12000.189001'
2025-07-22 07:20:31 (8492): Status Report: CPU Time: '24922.407758'
2025-07-22 09:00:34 (8492): Status Report: Elapsed Time: '18000.189001'
2025-07-22 09:00:34 (8492): Status Report: CPU Time: '39317.368833'
2025-07-22 10:40:37 (8492): Status Report: Elapsed Time: '24000.189001'
2025-07-22 10:40:37 (8492): Status Report: CPU Time: '53711.019499'
2025-07-22 12:20:39 (8492): Status Report: Elapsed Time: '30000.189001'
2025-07-22 12:20:39 (8492): Status Report: CPU Time: '68106.713779'
2025-07-22 14:00:42 (8492): Status Report: Elapsed Time: '36000.189001'
2025-07-22 14:00:42 (8492): Status Report: CPU Time: '82495.934017'
2025-07-22 15:40:44 (8492): Status Report: Elapsed Time: '42000.189001'
2025-07-22 15:40:44 (8492): Status Report: CPU Time: '96892.954305'
2025-07-22 17:20:48 (8492): Status Report: Elapsed Time: '48000.189001'
2025-07-22 17:20:48 (8492): Status Report: CPU Time: '111150.135296'
2025-07-22 19:00:52 (8492): Status Report: Elapsed Time: '54000.333731'
2025-07-22 19:00:52 (8492): Status Report: CPU Time: '125514.020972'
2025-07-22 20:40:55 (8492): Status Report: Elapsed Time: '60000.333731'
2025-07-22 20:40:55 (8492): Status Report: CPU Time: '139913.552876'
2025-07-22 22:20:57 (8492): Status Report: Elapsed Time: '66000.333731'
2025-07-22 22:20:57 (8492): Status Report: CPU Time: '148134.056771'
2025-07-23 00:00:58 (8492): Status Report: Elapsed Time: '72000.333731'
2025-07-23 00:00:58 (8492): Status Report: CPU Time: '148270.261244'
2025-07-23 01:37:56 (8492): Guest Log:  *** Job finished ***
2025-07-23 01:37:56 (8492): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:33:59,978 | INFO     | [data] copytool_out thread has finished
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:03,838 | INFO     | [data] queue_monitor thread has finished
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:05,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621400864576)>', '<ExcThread(monitor, started 139620494849792)>']
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:05,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:05,849 | INFO     | [monitor] control thread has ended
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:10,816 | INFO     | all workflow threads have been joined
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:10,817 | INFO     | end of generic workflow (traces error code: 0)
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:10,817 | INFO     | traces error code: 0
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:10,817 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:11,066 [wrapper] ==== pilot stdout END ====
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:11,076 [wrapper] ==== wrapper stdout RESUME ====
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:11,085 [wrapper] pilotpid: 6023
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:34:11,094 [wrapper] Pilot exit status: 0
2025-07-23 01:37:56 (8492): Guest Log: ./runpilot2-wrapper.sh: line 1018: /usr/bin/xargs: Input/output error
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,414 [wrapper] pandaids: 
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,523 [wrapper] cleanup supervisor_pilot  1504 6024
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,533 [wrapper] Test setup, not cleaning
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,543 [wrapper] apfmon messages muted
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,553 [wrapper] ==== wrapper stdout END ====
2025-07-23 01:37:56 (8492): Guest Log: 2025-07-23 05:37:54,562 [wrapper] ==== wrapper stderr END ====
2025-07-23 01:37:56 (8492): Guest Log:  *** Error codes and diagnostics ***
2025-07-23 01:37:56 (8492): Guest Log:     "exeErrorCode": 68,
2025-07-23 01:37:56 (8492): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-07-23 01:37:56 (8492): Guest Log:     "pilotErrorCode": 1305,
2025-07-23 01:37:56 (8492): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-07-23 01:37:56 (8492): Guest Log:  *** Listing of results directory ***
2025-07-23 01:37:56 (8492): Guest Log: total 11664
2025-07-23 01:37:56 (8492): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 21 23:18 pilot3.tar.gz
2025-07-23 01:37:56 (8492): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 21 23:48 queuedata.json
2025-07-23 01:37:56 (8492): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 21 23:49 runpilot2-wrapper.sh
2025-07-23 01:37:56 (8492): Guest Log: -rwxr-xr-x. 1 atlas atlas    6050 Jul 22 08:03 init_data.xml
2025-07-23 01:37:56 (8492): Guest Log: -rwxr-xr-x. 1 atlas atlas  542904 Jul 22 08:03 input.tar.gz
2025-07-23 01:37:56 (8492): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 22 08:03 start_atlas.sh
2025-07-23 01:37:56 (8492): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 22 08:03 EVNT.45697530._000129.pool.root.1 -> /data/./ATLAS.root_0
2025-07-23 01:37:56 (8492): Guest Log: -rw-r--r--. 1 atlas atlas    2612 Jul 22 08:05 pandaJob.out
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas  977339 Jul 22 08:11 agis_schedconf.cvmfs.json
2025-07-23 01:37:56 (8492): Guest Log: drwx------. 4 atlas atlas    4096 Jul 22 08:11 pilot3
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas    1037 Jul 23 02:10 memory_monitor_summary.json
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas  567340 Jul 23 02:14 log.45697532._003215.job.log.tgz.1
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas       0 Jul 23 02:18 agis_ddmendpoints.agis.ALL.json
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas      95 Jul 23 05:33 pilot_heartbeat.json
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas   10736 Jul 23 05:33 heartbeat.json
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas    4540 Jul 23 05:34 pilotlog.txt
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas 4295471 Jul 23 05:37 log.45697532._003215.job.log.1
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas     188 Jul 23 05:37 output.list
2025-07-23 01:37:56 (8492): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 23 05:37 runtime_log
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas 4884480 Jul 23 05:37 result.tar.gz
2025-07-23 01:37:56 (8492): Guest Log: -rw-r--r--. 1 atlas atlas    8457 Jul 23 05:37 runtime_log.err
2025-07-23 01:37:56 (8492): Guest Log: -rw-------. 1 atlas atlas     665 Jul 23 05:37 FVaMDmORFy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhMHLDm1xOiRo.diag
2025-07-23 01:37:56 (8492): Guest Log: Looking for outputfile HITS.45697532._003215.pool.root.1
2025-07-23 01:37:56 (8492): Guest Log: No HITS file was produced
2025-07-23 01:37:56 (8492): Guest Log: Successfully finished the ATLAS job!
2025-07-23 01:37:56 (8492): Guest Log: Copying the results back to the shared directory!
2025-07-23 01:37:56 (8492): Guest Log:  *** Contents of shared directory: ***
2025-07-23 01:37:56 (8492): Guest Log: total 329512
2025-07-23 01:37:56 (8492): Guest Log: -rwxrwxrwx. 1 root root 331963912 Jul 22 07:59 ATLAS.root_0
2025-07-23 01:37:56 (8492): Guest Log: -rwxrwxrwx. 1 root root      6050 Jul 22 07:59 init_data.xml
2025-07-23 01:37:56 (8492): Guest Log: -rwxrwxrwx. 1 root root    542904 Jul 22 03:05 input.tar.gz
2025-07-23 01:37:56 (8492): Guest Log: -rwxrwxrwx. 1 root root   4884480 Jul 23 05:37 result.tar.gz
2025-07-23 01:37:56 (8492): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 22 03:05 start_atlas.sh
2025-07-23 01:37:56 (8492): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-23 01:37:56 (8492): VM Completion File Detected.
2025-07-23 01:37:56 (8492): Powering off VM.
2025-07-23 01:37:58 (8492): Successfully stopped VM.
2025-07-23 01:37:58 (8492): Deregistering VM. (boinc_cf51c4f47310b1ff, slot#0)
2025-07-23 01:37:58 (8492): Removing network bandwidth throttle group from VM.
2025-07-23 01:38:00 (8492): Removing VM from VirtualBox.
01:38:06 (8492): called boinc_finish(0)

</stderr_txt>
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