Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:53:51 (2812996): wrapper (7.7.26015): starting
19:53:51 (2812996): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 19:53:51] Arguments: --nthreads 8
[2025-07-21 19:53:51] Threads: 8
[2025-07-21 19:53:51] Checking for CVMFS
[2025-07-21 19:53:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 19:53:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 19:53:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 19:53:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 19:53:52] 2.11.3.0 21153 471131 306224 148605 1 262 22935585 45568001 10802 130560 0 2518972625 99.767 1912150426 20031 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-07-21 19:53:52] CVMFS is ok
[2025-07-21 19:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 19:53:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 19:53:52] Further information can be found at the LHC@home message board.
[2025-07-21 19:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 19:53:52] Checking for apptainer binary...
[2025-07-21 19:53:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 19:53:52] Running /usr/bin/apptainer --version
[2025-07-21 19:53:52] apptainer version 1.3.3-1.el9
[2025-07-21 19:53:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 19:53:53] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0023.triumf.lcg
[2025-07-21 19:53:53] apptainer works
[2025-07-21 19:53:53] Set ATHENA_PROC_NUMBER=8
[2025-07-21 19:53:53] Set ATHENA_CORE_NUMBER=8
[2025-07-21 19:53:53] Starting ATLAS job with PandaID=6741711248
[2025-07-21 19:53:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 19:59:01]  *** The last 200 lines of the pilot log: ***
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 19:59:01] 2025-07-22 02:58:27,573 | WARNING  | wrong length of table data, x=[1753152951.0], y=[850.0] (must be same and length>=4)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . Timing measurements:
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . get job = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . initial setup = 6 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload setup = 23 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . stage-in = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload execution = 43 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . stage-out = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . log creation = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741711248/pilotlog.txt
[2025-07-21 19:59:01] 2025-07-22 02:58:27,608 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 19:59:01] - Log from pilotlog.txt -
[2025-07-21 19:59:01] 2025-07-22 02:58:27,551 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741711248/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | INFO     | extracted standard info from prmon json
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 19:59:01] 2025-07-22 02:58:27,573 | WARNING  | wrong length of table data, x=[1753152951.0], y=[850.0] (must be same and length>=4)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . Timing measurements:
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . get job = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . initial setup = 6 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload setup = 23 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . stage-in = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload execution = 43 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . stage-out = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . log creation = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741711248/pilotlog.txt
[2025-07-21 19:59:01] 2025-07-22 02:58:27,609 | WARNING  | 
[2025-07-21 19:59:01] [begin log extracts]
[2025-07-21 19:59:01] - Log from pilotlog.txt -
[2025-07-21 19:59:01] 2025-07-22 02:58:27,551 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741711248/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | INFO     | extracted standard info from prmon json
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 19:59:01] 2025-07-22 02:58:27,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 19:59:01] 2025-07-22 02:58:27,573 | WARNING  | wrong length of table data, x=[1753152951.0], y=[850.0] (must be same and length>=4)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . Timing measurements:
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . get job = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . initial setup = 6 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload setup = 23 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . stage-in = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,574 | INFO     | . payload execution = 43 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . stage-out = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | . log creation = 0 s
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | ..............................
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:59:01] 2025-07-22 02:58:27,575 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741711248/pilotlog.txt
[2025-07-21 19:59:01] [end log extracts]
[2025-07-21 19:59:01] 2025-07-22 02:58:27,609 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 19:59:01] 2025-07-22 02:58:27,610 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 19:59:01] 2025-07-22 02:58:28,102 | INFO     | 
[2025-07-21 19:59:01] 2025-07-22 02:58:28,102 | INFO     | job summary report
[2025-07-21 19:59:01] 2025-07-22 02:58:28,102 | INFO     | --------------------------------------------------
[2025-07-21 19:59:01] 2025-07-22 02:58:28,102 | INFO     | PanDA job id: 6741711248
[2025-07-21 19:59:01] 2025-07-22 02:58:28,102 | INFO     | task id: 45697453
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 19:56:10,801 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | pilot state: failed 
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | transexitcode: 65
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | exeerrorcode: 65
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | exitcode: 65
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | cpuconsumptiontime: 17 s
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | nevents: 0
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | neventsw: 0
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | pid: 2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | pgrp: 2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | corecount: 8
[2025-07-21 19:59:01] 2025-07-22 02:58:28,103 | INFO     | event service: False
[2025-07-21 19:59:01] 2025-07-22 02:58:28,104 | INFO     | sizes: {0: 2397332, 1: 2397388, 2: 2397444, 3: 2397444, 4: 2397643, 15: 2397643, 22: 2398061, 26: 2398089, 71: 2421594, 73: 2425886, 76: 2425914, 200: 2426388}
[2025-07-21 19:59:01] 2025-07-22 02:58:28,104 | INFO     | --------------------------------------------------
[2025-07-21 19:59:01] 2025-07-22 02:58:28,104 | INFO     | 
[2025-07-21 19:59:01] 2025-07-22 02:58:28,104 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 19:59:01] 2025-07-22 02:58:28,192 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | job 6741711248 has completed (purged errors)
[2025-07-21 19:59:01] 2025-07-22 02:58:28,194 | INFO     | overall cleanup function is called
[2025-07-21 19:59:01] 2025-07-22 02:58:29,200 | INFO     | --- collectZombieJob: --- 10, [2828773]
[2025-07-21 19:59:01] 2025-07-22 02:58:29,200 | INFO     | zombie collector waiting for pid 2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:29,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 19:59:01] 2025-07-22 02:58:29,200 | INFO     | collected zombie processes
[2025-07-21 19:59:01] 2025-07-22 02:58:29,200 | INFO     | will attempt to kill all subprocesses of pid=2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:29,453 | INFO     | process IDs to be killed: [2828773] (in reverse order)
[2025-07-21 19:59:01] 2025-07-22 02:58:29,513 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 19:59:01] 2025-07-22 02:58:29,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 19:59:01] 2025-07-22 02:58:29,520 | INFO     | did not find any defunct processes belonging to 2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:29,526 | INFO     | did not find any defunct processes belonging to 2828773
[2025-07-21 19:59:01] 2025-07-22 02:58:29,526 | INFO     | ready for new job
[2025-07-21 19:59:01] 2025-07-22 02:58:29,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 19:59:01] 2025-07-22 02:58:29,528 | INFO     | ***************************************
[2025-07-21 19:59:01] 2025-07-22 02:58:29,528 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 19:59:01] 2025-07-22 02:58:29,528 | INFO     | ***************************************
[2025-07-21 19:59:01] 2025-07-22 02:58:29,528 | INFO     | 
[2025-07-21 19:59:01] 2025-07-22 02:58:29,542 | INFO     | architecture information:
[2025-07-21 19:59:01] 2025-07-22 02:58:29,543 | INFO     | executing command: cat /etc/os-release
[2025-07-21 19:59:01] 2025-07-22 02:58:29,553 | INFO     | cat /etc/os-release:
[2025-07-21 19:59:01] NAME="CentOS Linux"
[2025-07-21 19:59:01] VERSION="7 (Core)"
[2025-07-21 19:59:01] ID="centos"
[2025-07-21 19:59:01] ID_LIKE="rhel fedora"
[2025-07-21 19:59:01] VERSION_ID="7"
[2025-07-21 19:59:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 19:59:01] ANSI_COLOR="0;31"
[2025-07-21 19:59:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 19:59:01] HOME_URL="https://www.centos.org/"
[2025-07-21 19:59:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 19:59:01] 
[2025-07-21 19:59:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 19:59:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 19:59:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 19:59:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 19:59:01] 
[2025-07-21 19:59:01] 2025-07-22 02:58:29,553 | INFO     | ***************************************
[2025-07-21 19:59:01] 2025-07-22 02:58:30,057 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 19:59:01] 2025-07-22 02:58:30,133 | INFO     | sufficient remaining disk space (1359806988288 B)
[2025-07-21 19:59:01] 2025-07-22 02:58:30,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 19:59:01] 2025-07-22 02:58:30,133 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 19:59:01] 2025-07-22 02:58:30,133 | INFO     | update_server=False
[2025-07-21 19:59:01] 2025-07-22 02:58:30,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 19:59:01] 2025-07-22 02:58:30,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 19:59:01] 2025-07-22 02:58:30,167 | INFO     | all job control threads have been joined
[2025-07-21 19:59:01] 2025-07-22 02:58:30,556 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-21 19:59:01] 2025-07-22 02:58:30,556 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-21 19:59:01] 2025-07-22 02:58:30,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 19:59:01] 2025-07-22 02:58:30,556 | INFO     | will abort loop
[2025-07-21 19:59:01] 2025-07-22 02:58:30,730 | INFO     | all payload control threads have been joined
[2025-07-21 19:59:01] 2025-07-22 02:58:31,009 | INFO     | all data control threads have been joined
[2025-07-21 19:59:01] 2025-07-22 02:58:31,141 | INFO     | [job] retrieve thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,173 | INFO     | [job] control thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,361 | INFO     | [payload] validate_post thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,447 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,560 | INFO     | [data] copytool_in thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,562 | INFO     | [job] job monitor thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,705 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,738 | INFO     | [payload] control thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:31,758 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 19:59:01] 2025-07-22 02:58:32,015 | INFO     | [data] control thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:32,103 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:32,141 | INFO     | [data] copytool_out thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:32,271 | INFO     | [payload] failed_post thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:32,272 | INFO     | [job] validate thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:32,280 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:33,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 19:59:01] 2025-07-22 02:58:34,101 | INFO     | [job] queue monitor thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:35,766 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 19:59:01] 2025-07-22 02:58:36,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325189125952)>', '<ExcThread(monitor, started 140323745421056)>']
[2025-07-21 19:59:01] 2025-07-22 02:58:41,578 | INFO     | all workflow threads have been joined
[2025-07-21 19:59:01] 2025-07-22 02:58:41,578 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 19:59:01] 2025-07-22 02:58:41,578 | INFO     | traces error code: 0
[2025-07-21 19:59:01] 2025-07-22 02:58:41,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 19:59:01] 2025-07-22 02:59:00,491 | INFO     | PID=2818691 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | INFO     | .. there are 26 such processes running
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 19:59:01] 2025-07-22 02:59:00,492 | INFO     | [monitor] control thread has ended
[2025-07-21 19:59:01] 2025-07-22 02:59:00,619 [wrapper] ==== pilot stdout END ====
[2025-07-21 19:59:01] 2025-07-22 02:59:00,656 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 19:59:01] 2025-07-22 02:59:00,705 [wrapper] pilotpid: 2818691
[2025-07-21 19:59:01] 2025-07-22 02:59:00,752 [wrapper] Pilot exit status: 0
[2025-07-21 19:59:01] 2025-07-22 02:59:00,897 [wrapper] pandaids: 6741711248
[2025-07-21 19:59:01] 2025-07-22 02:59:00,949 [wrapper] cleanup supervisor_pilot 2818704 2818692
[2025-07-21 19:59:01] 2025-07-22 02:59:00,952 [wrapper] Test setup, not cleaning
[2025-07-21 19:59:01] 2025-07-22 02:59:00,954 [wrapper] apfmon messages muted
[2025-07-21 19:59:01] 2025-07-22 02:59:00,956 [wrapper] ==== wrapper stdout END ====
[2025-07-21 19:59:01] 2025-07-22 02:59:00,964 [wrapper] ==== wrapper stderr END ====
[2025-07-21 19:59:01]  *** Error codes and diagnostics ***
[2025-07-21 19:59:01]     "exeErrorCode": 65,
[2025-07-21 19:59:01]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 19:59:01]     "pilotErrorCode": 1305,
[2025-07-21 19:59:01]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 19:59:01]  *** Listing of results directory ***
[2025-07-21 19:59:01] total 315692
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc    530466 Jul 21 18:19 pilot3.tar.gz
[2025-07-21 19:59:01] -rwx------. 1 boinc boinc     36292 Jul 21 18:25 runpilot2-wrapper.sh
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc      5112 Jul 21 18:25 queuedata.json
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc       100 Jul 21 19:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 19:59:01] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 19:53 run_atlas
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc       105 Jul 21 19:53 job.xml
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc      6448 Jul 21 19:53 init_data.xml
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc 319191544 Jul 21 19:53 EVNT.45697451._000099.pool.root.1
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc     15095 Jul 21 19:53 start_atlas.sh
[2025-07-21 19:59:01] drwxrwx--x. 2 boinc boinc      4096 Jul 21 19:53 shared
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc    542898 Jul 21 19:53 input.tar.gz
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc         0 Jul 21 19:53 boinc_lockfile
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc      2633 Jul 21 19:53 pandaJob.out
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc    977326 Jul 21 19:54 agis_schedconf.cvmfs.json
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc   1593055 Jul 21 19:54 agis_ddmendpoints.agis.ALL.json
[2025-07-21 19:59:01] drwx------. 4 boinc boinc      4096 Jul 21 19:54 pilot3
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc       525 Jul 21 19:56 boinc_task_state.xml
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc       949 Jul 21 19:56 memory_monitor_summary.json
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc     22055 Jul 21 19:56 log.45697453._002455.job.log.tgz.1
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc        95 Jul 21 19:58 pilot_heartbeat.json
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc      8399 Jul 21 19:58 heartbeat.json
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc       823 Jul 21 19:59 pilotlog.txt
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc      8192 Jul 21 19:59 boinc_mmap_file
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc        23 Jul 21 19:59 wrapper_checkpoint.txt
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc     80867 Jul 21 19:59 log.45697453._002455.job.log.1
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc       188 Jul 21 19:59 output.list
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc       620 Jul 21 19:59 runtime_log
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc    122880 Jul 21 19:59 result.tar.gz
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc      8648 Jul 21 19:59 runtime_log.err
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc       647 Jul 21 19:59 GZrNDmdwGy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmW8tKDmydqFnm.diag
[2025-07-21 19:59:01] -rw-r--r--. 1 boinc boinc     22036 Jul 21 19:59 stderr.txt
[2025-07-21 19:59:01] No HITS result produced
[2025-07-21 19:59:01]  *** Contents of shared directory: ***
[2025-07-21 19:59:01] total 312384
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc 319191544 Jul 21 19:53 ATLAS.root_0
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc     15095 Jul 21 19:53 start_atlas.sh
[2025-07-21 19:59:01] -rw-r--r--. 2 boinc boinc    542898 Jul 21 19:53 input.tar.gz
[2025-07-21 19:59:01] -rw-------. 1 boinc boinc    122880 Jul 21 19:59 result.tar.gz
19:59:02 (2812996): run_atlas exited; CPU time 27.116621
19:59:02 (2812996): called boinc_finish(0)

</stderr_txt>
]]>

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