Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:18:02 (1194369): wrapper (7.7.26015): starting
19:18:02 (1194369): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 19:18:02] Arguments: --nthreads 8
[2025-07-21 19:18:02] Threads: 8
[2025-07-21 19:18:02] Checking for CVMFS
[2025-07-21 19:18:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 19:18:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 19:18:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 19:18:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 19:18:03] 2.11.3.0 22447 471095 306812 148605 2 60 27984539 45568001 16689 130560 0 2436674845 99.758 1961723463 20109 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-07-21 19:18:03] CVMFS is ok
[2025-07-21 19:18:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 19:18:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 19:18:03] Further information can be found at the LHC@home message board.
[2025-07-21 19:18:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 19:18:03] Checking for apptainer binary...
[2025-07-21 19:18:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 19:18:03] Running /usr/bin/apptainer --version
[2025-07-21 19:18:04] apptainer version 1.3.3-1.el9
[2025-07-21 19:18:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 19:18:04] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0007.triumf.lcg
[2025-07-21 19:18:04] apptainer works
[2025-07-21 19:18:04] Set ATHENA_PROC_NUMBER=8
[2025-07-21 19:18:04] Set ATHENA_CORE_NUMBER=8
[2025-07-21 19:18:05] Starting ATLAS job with PandaID=6741710491
[2025-07-21 19:18:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 19:23:21]  *** The last 200 lines of the pilot log: ***
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . Timing measurements:
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . get job = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . initial setup = 4 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . payload setup = 14 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-in = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . payload execution = 63 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-out = 1 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . log creation = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741710491/pilotlog.txt
[2025-07-21 19:23:21] 2025-07-22 02:22:46,379 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 19:23:21] - Log from pilotlog.txt -
[2025-07-21 19:23:21] 2025-07-22 02:22:46,342 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741710491/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,342 | INFO     | extracted standard info from prmon json
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | WARNING  | wrong length of table data, x=[1753150777.0], y=[1827.0] (must be same and length>=4)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . Timing measurements:
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . get job = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . initial setup = 4 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . payload setup = 14 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-in = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . payload execution = 63 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-out = 1 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . log creation = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741710491/pilotlog.txt
[2025-07-21 19:23:21] 2025-07-22 02:22:46,379 | WARNING  | 
[2025-07-21 19:23:21] [begin log extracts]
[2025-07-21 19:23:21] - Log from pilotlog.txt -
[2025-07-21 19:23:21] 2025-07-22 02:22:46,342 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741710491/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,342 | INFO     | extracted standard info from prmon json
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 19:23:21] 2025-07-22 02:22:46,343 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | WARNING  | wrong length of table data, x=[1753150777.0], y=[1827.0] (must be same and length>=4)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . Timing measurements:
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . get job = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . initial setup = 4 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,344 | INFO     | . payload setup = 14 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-in = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . payload execution = 63 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . stage-out = 1 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | . log creation = 0 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | ..............................
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 19:23:21] 2025-07-22 02:22:46,345 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741710491/pilotlog.txt
[2025-07-21 19:23:21] [end log extracts]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,380 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,380 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 19:23:21] 2025-07-22 02:22:46,494 | INFO     | PID=1197946 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 19:23:21] 2025-07-22 02:22:46,494 | INFO     | .. there are 33 such processes running
[2025-07-21 19:23:21] 2025-07-22 02:22:46,506 | INFO     | 
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | job summary report
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | --------------------------------------------------
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | PanDA job id: 6741710491
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | task id: 45697453
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 19:20:18,633 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | pilot state: failed 
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | transexitcode: 65
[2025-07-21 19:23:21] 2025-07-22 02:22:46,507 | INFO     | exeerrorcode: 65
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | exitcode: 65
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | cpuconsumptiontime: 18 s
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | nevents: 0
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | neventsw: 0
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | pid: 1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | pgrp: 1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | corecount: 8
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | event service: False
[2025-07-21 19:23:21] 2025-07-22 02:22:46,508 | INFO     | sizes: {0: 2396734, 1: 2397416, 2: 2397615, 13: 2397615, 17: 2397933, 24: 2397961, 82: 2421478, 83: 2425770, 85: 2425826, 218: 2425992}
[2025-07-21 19:23:21] 2025-07-22 02:22:46,509 | INFO     | --------------------------------------------------
[2025-07-21 19:23:21] 2025-07-22 02:22:46,509 | INFO     | 
[2025-07-21 19:23:21] 2025-07-22 02:22:46,509 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 19:23:21] 2025-07-22 02:22:46,533 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | job 6741710491 has completed (purged errors)
[2025-07-21 19:23:21] 2025-07-22 02:22:46,536 | INFO     | overall cleanup function is called
[2025-07-21 19:23:21] 2025-07-22 02:22:47,559 | INFO     | --- collectZombieJob: --- 10, [1204332]
[2025-07-21 19:23:21] 2025-07-22 02:22:47,559 | INFO     | zombie collector waiting for pid 1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:47,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 19:23:21] 2025-07-22 02:22:47,560 | INFO     | collected zombie processes
[2025-07-21 19:23:21] 2025-07-22 02:22:47,560 | INFO     | will attempt to kill all subprocesses of pid=1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:48,055 | INFO     | process IDs to be killed: [1204332] (in reverse order)
[2025-07-21 19:23:21] 2025-07-22 02:22:48,128 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 19:23:21] 2025-07-22 02:22:48,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 19:23:21] 2025-07-22 02:22:48,168 | INFO     | did not find any defunct processes belonging to 1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:48,206 | INFO     | did not find any defunct processes belonging to 1204332
[2025-07-21 19:23:21] 2025-07-22 02:22:48,207 | INFO     | ready for new job
[2025-07-21 19:23:21] 2025-07-22 02:22:48,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 19:23:21] 2025-07-22 02:22:48,209 | INFO     | ***************************************
[2025-07-21 19:23:21] 2025-07-22 02:22:48,209 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 19:23:21] 2025-07-22 02:22:48,209 | INFO     | ***************************************
[2025-07-21 19:23:21] 2025-07-22 02:22:48,209 | INFO     | 
[2025-07-21 19:23:21] 2025-07-22 02:22:48,222 | INFO     | architecture information:
[2025-07-21 19:23:21] 2025-07-22 02:22:48,223 | INFO     | executing command: cat /etc/os-release
[2025-07-21 19:23:21] 2025-07-22 02:22:48,235 | INFO     | cat /etc/os-release:
[2025-07-21 19:23:21] NAME="CentOS Linux"
[2025-07-21 19:23:21] VERSION="7 (Core)"
[2025-07-21 19:23:21] ID="centos"
[2025-07-21 19:23:21] ID_LIKE="rhel fedora"
[2025-07-21 19:23:21] VERSION_ID="7"
[2025-07-21 19:23:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 19:23:21] ANSI_COLOR="0;31"
[2025-07-21 19:23:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 19:23:21] HOME_URL="https://www.centos.org/"
[2025-07-21 19:23:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 19:23:21] 
[2025-07-21 19:23:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 19:23:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 19:23:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 19:23:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 19:23:21] 
[2025-07-21 19:23:21] 2025-07-22 02:22:48,235 | INFO     | ***************************************
[2025-07-21 19:23:21] 2025-07-22 02:22:48,745 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 19:23:21] 2025-07-22 02:22:48,852 | INFO     | sufficient remaining disk space (1071951904768 B)
[2025-07-21 19:23:21] 2025-07-22 02:22:48,853 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 19:23:21] 2025-07-22 02:22:48,853 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 19:23:21] 2025-07-22 02:22:48,853 | INFO     | update_server=False
[2025-07-21 19:23:21] 2025-07-22 02:22:48,853 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 19:23:21] 2025-07-22 02:22:48,881 | INFO     | all payload control threads have been joined
[2025-07-21 19:23:21] 2025-07-22 02:22:48,988 | INFO     | all job control threads have been joined
[2025-07-21 19:23:21] 2025-07-22 02:22:49,112 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-21 19:23:21] 2025-07-22 02:22:49,112 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-21 19:23:21] 2025-07-22 02:22:49,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 19:23:21] 2025-07-22 02:22:49,113 | INFO     | will abort loop
[2025-07-21 19:23:21] 2025-07-22 02:22:49,859 | INFO     | [job] retrieve thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:49,886 | INFO     | [payload] control thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:49,896 | INFO     | all data control threads have been joined
[2025-07-21 19:23:21] 2025-07-22 02:22:49,917 | INFO     | [payload] failed_post thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:49,994 | INFO     | [job] control thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 19:23:21] 2025-07-22 02:22:50,032 | INFO     | [job] validate thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 19:23:21] 2025-07-22 02:22:50,118 | INFO     | [job] job monitor thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,748 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,901 | INFO     | [data] control thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:50,970 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:51,135 | INFO     | [data] copytool_in thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:51,219 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:51,304 | INFO     | [payload] validate_post thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:51,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 19:23:21] 2025-07-22 02:22:52,119 | INFO     | [data] copytool_out thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:52,533 | INFO     | [job] queue monitor thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:54,033 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 19:23:21] 2025-07-22 02:22:55,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140585213376320)>', '<ExcThread(monitor, started 140584893257472)>']
[2025-07-21 19:23:21] 2025-07-22 02:23:00,354 | INFO     | all workflow threads have been joined
[2025-07-21 19:23:21] 2025-07-22 02:23:00,355 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 19:23:21] 2025-07-22 02:23:00,356 | INFO     | traces error code: 0
[2025-07-21 19:23:21] 2025-07-22 02:23:00,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 19:23:21] 2025-07-22 02:23:17,567 | INFO     | 259s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-21 19:23:21] 2025-07-22 02:23:19,862 | INFO     | PID=1197946 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 19:23:21] 2025-07-22 02:23:19,862 | INFO     | .. there are 33 such processes running
[2025-07-21 19:23:21] 2025-07-22 02:23:19,863 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 19:23:21] 2025-07-22 02:23:19,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 19:23:21] 2025-07-22 02:23:19,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 19:23:21] 2025-07-22 02:23:19,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 19:23:21] 2025-07-22 02:23:19,863 | INFO     | [monitor] control thread has ended
[2025-07-21 19:23:21] 2025-07-22 02:23:20,364 [wrapper] ==== pilot stdout END ====
[2025-07-21 19:23:21] 2025-07-22 02:23:20,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 19:23:21] 2025-07-22 02:23:20,369 [wrapper] pilotpid: 1197946
[2025-07-21 19:23:21] 2025-07-22 02:23:20,370 [wrapper] Pilot exit status: 0
[2025-07-21 19:23:21] 2025-07-22 02:23:20,390 [wrapper] pandaids: 6741710491
[2025-07-21 19:23:21] 2025-07-22 02:23:20,594 [wrapper] cleanup supervisor_pilot 1197952 1197947
[2025-07-21 19:23:21] 2025-07-22 02:23:20,615 [wrapper] Test setup, not cleaning
[2025-07-21 19:23:21] 2025-07-22 02:23:20,663 [wrapper] apfmon messages muted
[2025-07-21 19:23:21] 2025-07-22 02:23:20,678 [wrapper] ==== wrapper stdout END ====
[2025-07-21 19:23:21] 2025-07-22 02:23:20,689 [wrapper] ==== wrapper stderr END ====
[2025-07-21 19:23:21]  *** Error codes and diagnostics ***
[2025-07-21 19:23:21]     "exeErrorCode": 65,
[2025-07-21 19:23:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 19:23:21]     "pilotErrorCode": 1305,
[2025-07-21 19:23:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 19:23:21]  *** Listing of results directory ***
[2025-07-21 19:23:21] total 319024
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc    530466 Jul 21 17:55 pilot3.tar.gz
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc      5112 Jul 21 17:59 queuedata.json
[2025-07-21 19:23:21] -rwx------. 1 boinc boinc     36292 Jul 21 17:59 runpilot2-wrapper.sh
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc       100 Jul 21 19:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 19:23:21] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 19:18 run_atlas
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc       105 Jul 21 19:18 job.xml
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc      6448 Jul 21 19:18 init_data.xml
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc 322607054 Jul 21 19:18 EVNT.45697451._000080.pool.root.1
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc     15095 Jul 21 19:18 start_atlas.sh
[2025-07-21 19:23:21] drwxrwx--x. 2 boinc boinc      4096 Jul 21 19:18 shared
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc    542906 Jul 21 19:18 input.tar.gz
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc         0 Jul 21 19:18 boinc_lockfile
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc      2633 Jul 21 19:18 pandaJob.out
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc    977326 Jul 21 19:18 agis_schedconf.cvmfs.json
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc   1593055 Jul 21 19:18 agis_ddmendpoints.agis.ALL.json
[2025-07-21 19:23:21] drwx------. 4 boinc boinc      4096 Jul 21 19:18 pilot3
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc       524 Jul 21 19:20 boinc_task_state.xml
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc       942 Jul 21 19:20 memory_monitor_summary.json
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc     21379 Jul 21 19:20 log.45697453._001975.job.log.tgz.1
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc        95 Jul 21 19:22 pilot_heartbeat.json
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc      8400 Jul 21 19:22 heartbeat.json
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc       937 Jul 21 19:23 pilotlog.txt
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc        23 Jul 21 19:23 wrapper_checkpoint.txt
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc      8192 Jul 21 19:23 boinc_mmap_file
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc     81615 Jul 21 19:23 log.45697453._001975.job.log.1
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc       188 Jul 21 19:23 output.list
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc       620 Jul 21 19:23 runtime_log
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc    122880 Jul 21 19:23 result.tar.gz
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc      8648 Jul 21 19:23 runtime_log.err
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc       647 Jul 21 19:23 5soLDmfWGy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN4tKDmlgUlSo.diag
[2025-07-21 19:23:21] -rw-r--r--. 1 boinc boinc     22124 Jul 21 19:23 stderr.txt
[2025-07-21 19:23:21] No HITS result produced
[2025-07-21 19:23:21]  *** Contents of shared directory: ***
[2025-07-21 19:23:21] total 315716
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc 322607054 Jul 21 19:18 ATLAS.root_0
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc     15095 Jul 21 19:18 start_atlas.sh
[2025-07-21 19:23:21] -rw-r--r--. 2 boinc boinc    542906 Jul 21 19:18 input.tar.gz
[2025-07-21 19:23:21] -rw-------. 1 boinc boinc    122880 Jul 21 19:23 result.tar.gz
19:23:22 (1194369): run_atlas exited; CPU time 28.752556
19:23:22 (1194369): called boinc_finish(0)

</stderr_txt>
]]>

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