Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:11 (5810): wrapper (7.7.26015): starting
13:43:11 (5810): wrapper: running run_atlas (--nthreads 8)
[2025-07-22 13:43:11] Arguments: --nthreads 8
[2025-07-22 13:43:11] Threads: 8
[2025-07-22 13:43:11] Checking for CVMFS
[2025-07-22 13:43:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 13:43:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 13:43:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 13:43:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 13:43:15] 2.11.2.0 15878 102282 136404 148620 2 60 19698793 25165825 2116 130560 0 66168027 99.821 49478195 3286 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-22 13:43:15] CVMFS is ok
[2025-07-22 13:43:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 13:43:15] Checking for apptainer binary...
[2025-07-22 13:43:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 13:43:15] Running /usr/bin/apptainer --version
[2025-07-22 13:43:15] apptainer version 1.3.2-1.el7
[2025-07-22 13:45:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 13:45:27] cg-vwn433.simple-grid.lan
[2025-07-22 13:45:27] apptainer works
[2025-07-22 13:45:27] Set ATHENA_PROC_NUMBER=8
[2025-07-22 13:45:27] Set ATHENA_CORE_NUMBER=8
[2025-07-22 13:45:27] Starting ATLAS job with PandaID=6741800679
[2025-07-22 13:45:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 21:26:46]  *** The last 200 lines of the pilot log: ***
[2025-07-22 21:26:46] 2025-07-22 17:27:28,974 | INFO     | sum of square deviations: 11553509647.5
[2025-07-22 21:26:46] 2025-07-22 17:27:28,978 | INFO     | sum of deviations: 8879155119.999992
[2025-07-22 21:26:46] 2025-07-22 17:27:28,978 | INFO     | mean x: 1753194956.5
[2025-07-22 21:26:46] 2025-07-22 17:27:28,978 | INFO     | mean y: 2550291.389221557
[2025-07-22 21:26:46] 2025-07-22 17:27:28,978 | INFO     | -- intersect: -1344822970.0104928
[2025-07-22 21:26:46] 2025-07-22 17:27:28,978 | INFO     | intersect: -1344822970.0104928
[2025-07-22 21:26:46] 2025-07-22 17:27:28,979 | INFO     | chi2: 2.37792878087592
[2025-07-22 21:26:46] 2025-07-22 17:27:28,979 | INFO     | sum of square deviations: 11042365180.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,983 | INFO     | sum of deviations: 30744594811.000004
[2025-07-22 21:26:46] 2025-07-22 17:27:28,983 | INFO     | mean x: 1753194804.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,983 | INFO     | mean y: 2556733.0182370823
[2025-07-22 21:26:46] 2025-07-22 17:27:28,983 | INFO     | -- intersect: -4878758365.250463
[2025-07-22 21:26:46] 2025-07-22 17:27:28,983 | INFO     | intersect: -4878758365.250463
[2025-07-22 21:26:46] 2025-07-22 17:27:28,984 | INFO     | chi2: 1.609446853771772
[2025-07-22 21:26:46] 2025-07-22 17:27:28,984 | INFO     | current chi2=1.609446853771772 (change=32.317281042415175 %)
[2025-07-22 21:26:46] 2025-07-22 17:27:28,985 | INFO     | sum of square deviations: 10546523325.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,988 | INFO     | sum of deviations: 29719119236.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,988 | INFO     | mean x: 1753194651.5
[2025-07-22 21:26:46] 2025-07-22 17:27:28,988 | INFO     | mean y: 2556417.62345679
[2025-07-22 21:26:46] 2025-07-22 17:27:28,989 | INFO     | -- intersect: -4937782619.82384
[2025-07-22 21:26:46] 2025-07-22 17:27:28,989 | INFO     | intersect: -4937782619.82384
[2025-07-22 21:26:46] 2025-07-22 17:27:28,989 | INFO     | chi2: 1.609679282897314
[2025-07-22 21:26:46] 2025-07-22 17:27:28,989 | INFO     | current chi2=1.609679282897314 (change=-0.014441553319843845 %)
[2025-07-22 21:26:46] 2025-07-22 17:27:28,989 | INFO     | right removable region: 323
[2025-07-22 21:26:46] 2025-07-22 17:27:28,990 | INFO     | sum of square deviations: 11042365180.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,993 | INFO     | sum of deviations: -44990629056.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,993 | INFO     | mean x: 1753195109.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,993 | INFO     | mean y: 2566260.6565349544
[2025-07-22 21:26:46] 2025-07-22 17:27:28,993 | INFO     | -- intersect: 7145723503.334547
[2025-07-22 21:26:46] 2025-07-22 17:27:28,994 | INFO     | intersect: 7145723503.334547
[2025-07-22 21:26:46] 2025-07-22 17:27:28,994 | INFO     | chi2: 0.9201501071267385
[2025-07-22 21:26:46] 2025-07-22 17:27:28,994 | INFO     | current chi2=0.9201501071267385 (change=61.30455569036018 %)
[2025-07-22 21:26:46] 2025-07-22 17:27:28,995 | INFO     | sum of square deviations: 10546523325.0
[2025-07-22 21:26:46] 2025-07-22 17:27:28,998 | INFO     | sum of deviations: -43226981775.5
[2025-07-22 21:26:46] 2025-07-22 17:27:28,999 | INFO     | mean x: 1753195261.5
[2025-07-22 21:26:46] 2025-07-22 17:27:28,999 | INFO     | mean y: 2565700.8364197533
[2025-07-22 21:26:46] 2025-07-22 17:27:28,999 | INFO     | -- intersect: 7188378246.105072
[2025-07-22 21:26:46] 2025-07-22 17:27:28,999 | INFO     | intersect: 7188378246.105072
[2025-07-22 21:26:46] 2025-07-22 17:27:29,000 | INFO     | chi2: 0.9041602532059145
[2025-07-22 21:26:46] 2025-07-22 17:27:29,000 | INFO     | current chi2=0.9041602532059145 (change=1.7377440699054965 %)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,000 | INFO     | left removable region: 20
[2025-07-22 21:26:46] 2025-07-22 17:27:29,000 | INFO     | sum of square deviations: 8625843592.0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,003 | INFO     | sum of deviations: -2366524036.000002
[2025-07-22 21:26:46] 2025-07-22 17:27:29,004 | INFO     | mean x: 1753195231.0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,004 | INFO     | mean y: 2565873.663366337
[2025-07-22 21:26:46] 2025-07-22 17:27:29,004 | INFO     | -- intersect: 483559832.0757386
[2025-07-22 21:26:46] 2025-07-22 17:27:29,004 | INFO     | intersect: 483559832.0757386
[2025-07-22 21:26:46] 2025-07-22 17:27:29,005 | INFO     | chi2: 0.06692540544665783
[2025-07-22 21:26:46] 2025-07-22 17:27:29,005 | INFO     | -- intersect: 483559832.0757386
[2025-07-22 21:26:46] 2025-07-22 17:27:29,005 | INFO     | current memory leak: -0.27 B/s (using 303 data points, chi2=0.07)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | ..............................
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . Timing measurements:
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . get job = 0 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . initial setup = 2 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . payload setup = 13 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . stage-in = 0 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,006 | INFO     | . payload execution = 20354 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,007 | INFO     | . stage-out = 2 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,007 | INFO     | . log creation = 1 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,007 | INFO     | ..............................
[2025-07-22 21:26:46] 2025-07-22 17:27:29,142 | INFO     | 
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | job summary report
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | --------------------------------------------------
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | PanDA job id: 6741800679
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | task id: 45697532
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | errors: (none)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 21:26:46] 2025-07-22 17:27:29,143 | INFO     | pilot state: finished 
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | transexitcode: 0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | exeerrorcode: 0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | exeerrordiag: 
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | exitcode: 0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | exitmsg: OK
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | cpuconsumptiontime: 79350 s
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | nevents: 400
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | neventsw: 0
[2025-07-22 21:26:46] 2025-07-22 17:27:29,144 | INFO     | pid: 16487
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | pgrp: 16487
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | corecount: 8
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | event service: False
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | sizes: {0: 2396706, 1: 2397562, 8: 2397824, 12: 2397852, 20371: 2430706, 20374: 2439888, 20479: 2440026}
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | --------------------------------------------------
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | 
[2025-07-22 21:26:46] 2025-07-22 17:27:29,145 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-07-22 21:26:46] 2025-07-22 17:27:29,168 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,168 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,168 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,168 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,168 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,169 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 21:26:46] 2025-07-22 17:27:29,170 | INFO     | job 6741800679 has completed (purged errors)
[2025-07-22 21:26:46] 2025-07-22 17:27:29,171 | INFO     | overall cleanup function is called
[2025-07-22 21:26:46] 2025-07-22 17:27:30,179 | INFO     | --- collectZombieJob: --- 10, [16487]
[2025-07-22 21:26:46] 2025-07-22 17:27:30,180 | INFO     | zombie collector waiting for pid 16487
[2025-07-22 21:26:46] 2025-07-22 17:27:30,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 21:26:46] 2025-07-22 17:27:30,180 | INFO     | collected zombie processes
[2025-07-22 21:26:46] 2025-07-22 17:27:30,180 | INFO     | will attempt to kill all subprocesses of pid=16487
[2025-07-22 21:26:46] 2025-07-22 17:27:30,276 | INFO     | process IDs to be killed: [16487] (in reverse order)
[2025-07-22 21:26:46] 2025-07-22 17:27:30,330 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 21:26:46] 2025-07-22 17:27:30,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 21:26:46] 2025-07-22 17:27:30,333 | INFO     | did not find any defunct processes belonging to 16487
[2025-07-22 21:26:46] 2025-07-22 17:27:30,335 | INFO     | did not find any defunct processes belonging to 16487
[2025-07-22 21:26:46] 2025-07-22 17:27:30,336 | INFO     | ready for new job
[2025-07-22 21:26:46] 2025-07-22 17:27:30,336 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 21:26:46] 2025-07-22 17:27:30,338 | INFO     | ***************************************
[2025-07-22 21:26:46] 2025-07-22 17:27:30,338 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 21:26:46] 2025-07-22 17:27:30,338 | INFO     | ***************************************
[2025-07-22 21:26:46] 2025-07-22 17:27:30,338 | INFO     | 
[2025-07-22 21:26:46] 2025-07-22 17:27:30,340 | INFO     | pilot is running in a VM
[2025-07-22 21:26:46] 2025-07-22 17:27:30,340 | INFO     | architecture information:
[2025-07-22 21:26:46] 2025-07-22 17:27:30,340 | INFO     | executing command: cat /etc/os-release
[2025-07-22 21:26:46] 2025-07-22 17:27:30,446 | INFO     | cat /etc/os-release:
[2025-07-22 21:26:46] NAME="CentOS Linux"
[2025-07-22 21:26:46] VERSION="7 (Core)"
[2025-07-22 21:26:46] ID="centos"
[2025-07-22 21:26:46] ID_LIKE="rhel fedora"
[2025-07-22 21:26:46] VERSION_ID="7"
[2025-07-22 21:26:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 21:26:46] ANSI_COLOR="0;31"
[2025-07-22 21:26:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 21:26:46] HOME_URL="https://www.centos.org/"
[2025-07-22 21:26:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 21:26:46] 
[2025-07-22 21:26:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 21:26:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 21:26:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 21:26:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 21:26:46] 
[2025-07-22 21:26:46] 2025-07-22 17:27:30,447 | INFO     | ***************************************
[2025-07-22 21:26:46] 2025-07-22 17:27:30,951 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-07-22 21:26:46] 2025-07-22 17:27:31,122 | INFO     | sufficient remaining disk space (497021878272 B)
[2025-07-22 21:26:46] 2025-07-22 17:27:31,123 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 21:26:46] 2025-07-22 17:27:31,123 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 21:26:46] 2025-07-22 17:27:31,123 | INFO     | update_server=False
[2025-07-22 21:26:46] 2025-07-22 17:27:31,123 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 21:26:46] 2025-07-22 17:27:31,123 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 21:26:46] 2025-07-22 17:27:31,547 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-22 21:26:46] 2025-07-22 17:27:31,548 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-22 21:26:46] 2025-07-22 17:27:31,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 21:26:46] 2025-07-22 17:27:31,548 | INFO     | will abort loop
[2025-07-22 21:26:46] 2025-07-22 17:27:31,931 | INFO     | all payload control threads have been joined
[2025-07-22 21:26:46] 2025-07-22 17:27:31,970 | INFO     | all data control threads have been joined
[2025-07-22 21:26:46] 2025-07-22 17:27:32,129 | INFO     | [job] retrieve thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:32,129 | INFO     | [job] queue monitor thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:32,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 21:26:46] 2025-07-22 17:27:32,288 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:32,554 | INFO     | [job] job monitor thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:32,742 | INFO     | all job control threads have been joined
[2025-07-22 21:26:46] 2025-07-22 17:27:32,938 | INFO     | [payload] control thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:32,977 | INFO     | [data] control thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,016 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,038 | INFO     | [job] validate thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,116 | INFO     | [payload] validate_post thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,447 | INFO     | [payload] failed_post thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,502 | INFO     | [data] copytool_in thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,538 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,749 | INFO     | [job] control thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:33,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 21:26:46] 2025-07-22 17:27:34,250 | INFO     | [data] copytool_out thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:37,837 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:42,067 | INFO     | job.realtimelogging is not enabled
[2025-07-22 21:26:46] 2025-07-22 17:27:43,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 21:26:46] 2025-07-22 17:27:45,146 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513342572352)>', '<ExcThread(monitor, started 140513034348288)>']
[2025-07-22 21:26:46] 2025-07-22 17:27:50,171 | INFO     | all workflow threads have been joined
[2025-07-22 21:26:46] 2025-07-22 17:27:50,172 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 21:26:46] 2025-07-22 17:27:50,172 | INFO     | traces error code: 0
[2025-07-22 21:26:46] 2025-07-22 17:27:50,172 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 21:26:46] 2025-07-22 17:28:01,765 | INFO     | PID=9899 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-22 21:26:46] 2025-07-22 17:28:01,765 | INFO     | .. there are 9 such processes running
[2025-07-22 21:26:46] 2025-07-22 17:28:01,765 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 21:26:46] 2025-07-22 17:28:01,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 21:26:46] 2025-07-22 17:28:01,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 21:26:46] 2025-07-22 17:28:01,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 21:26:46] 2025-07-22 17:28:01,766 | CRITICAL | thread 'MainThread' is not alive
[2025-07-22 21:26:46] 2025-07-22 17:28:01,766 | INFO     | [monitor] control thread has ended
[2025-07-22 21:26:46] 2025-07-22 17:28:02,036 [wrapper] ==== pilot stdout END ====
[2025-07-22 21:26:46] 2025-07-22 17:28:02,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 21:26:46] 2025-07-22 17:28:02,210 [wrapper] pilotpid: 9899
[2025-07-22 21:26:46] 2025-07-22 17:28:02,270 [wrapper] Pilot exit status: 0
[2025-07-22 21:26:46] 2025-07-22 17:28:02,688 [wrapper] pandaids: 6741800679
[2025-07-22 21:26:46] 2025-07-22 17:28:03,618 [wrapper] cleanup supervisor_pilot 17206 9900
[2025-07-22 21:26:46] 2025-07-22 17:28:03,714 [wrapper] Test setup, not cleaning
[2025-07-22 21:26:46] 2025-07-22 17:28:03,816 [wrapper] apfmon messages muted
[2025-07-22 21:26:46] 2025-07-22 17:28:03,931 [wrapper] ==== wrapper stdout END ====
[2025-07-22 21:26:46] 2025-07-22 17:28:04,066 [wrapper] ==== wrapper stderr END ====
[2025-07-22 21:26:46]  *** Error codes and diagnostics ***
[2025-07-22 21:26:46]     "exeErrorCode": 0,
[2025-07-22 21:26:46]     "exeErrorDiag": "",
[2025-07-22 21:26:46]     "pilotErrorCode": 0,
[2025-07-22 21:26:46]     "pilotErrorDiag": "",
[2025-07-22 21:26:46]  *** Listing of results directory ***
[2025-07-22 21:26:46] total 611664
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc    530466 Jul 22 01:18 pilot3.tar.gz
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc      5112 Jul 22 01:30 queuedata.json
[2025-07-22 21:26:46] -rwx------. 1 boinc boinc     36292 Jul 22 01:31 runpilot2-wrapper.sh
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc       100 Jul 22 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 21:26:46] -rwxr-xr-x. 1 boinc boinc      7986 Jul 22 13:43 run_atlas
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc       105 Jul 22 13:43 job.xml
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc      6391 Jul 22 13:43 init_data.xml
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc 333860457 Jul 22 13:43 EVNT.45697530._000112.pool.root.1
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc     15095 Jul 22 13:43 start_atlas.sh
[2025-07-22 21:26:46] drwxrwx--x. 2 boinc boinc        68 Jul 22 13:43 shared
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc    542897 Jul 22 13:43 input.tar.gz
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc         0 Jul 22 13:43 boinc_lockfile
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc      2612 Jul 22 13:45 pandaJob.out
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc    976662 Jul 22 13:45 agis_schedconf.cvmfs.json
[2025-07-22 21:26:46] drwx------. 4 boinc boinc      4096 Jul 22 13:45 pilot3
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc 284249947 Jul 22 19:24 HITS.45697532._002790.pool.root.1
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc       531 Jul 22 19:24 boinc_task_state.xml
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc      1018 Jul 22 19:25 memory_monitor_summary.json
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc   1593031 Jul 22 19:25 agis_ddmendpoints.agis.ALL.json
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc    441081 Jul 22 19:25 log.45697532._002790.job.log.tgz.1
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc        95 Jul 22 19:27 pilot_heartbeat.json
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc      7770 Jul 22 19:27 heartbeat.json
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc       889 Jul 22 19:28 pilotlog.txt
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc   1747034 Jul 22 19:28 log.45697532._002790.job.log.1
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc       357 Jul 22 19:28 output.list
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc       620 Jul 22 19:28 runtime_log
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc   2211840 Jul 22 19:28 result.tar.gz
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc      8660 Jul 22 19:28 runtime_log.err
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc       657 Jul 22 19:28 O78LDmMAFy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyHHLDmpEZvYn.diag
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc      8192 Jul 22 21:26 boinc_mmap_file
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc        28 Jul 22 21:26 wrapper_checkpoint.txt
[2025-07-22 21:26:46] -rw-r--r--. 1 boinc boinc     20579 Jul 22 21:26 stderr.txt
[2025-07-22 21:26:46] HITS file was successfully produced:
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc 284249947 Jul 22 19:24 shared/HITS.pool.root.1
[2025-07-22 21:26:46]  *** Contents of shared directory: ***
[2025-07-22 21:26:46] total 606332
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc 333860457 Jul 22 13:43 ATLAS.root_0
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc     15095 Jul 22 13:43 start_atlas.sh
[2025-07-22 21:26:46] -rw-r--r--. 2 boinc boinc    542897 Jul 22 13:43 input.tar.gz
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc 284249947 Jul 22 19:24 HITS.pool.root.1
[2025-07-22 21:26:46] -rw-------. 1 boinc boinc   2211840 Jul 22 19:28 result.tar.gz
21:26:48 (5810): run_atlas exited; CPU time 79611.910966
21:26:48 (5810): called boinc_finish(0)

</stderr_txt>
]]>

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