Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:42:49 (1621546): wrapper (7.7.26015): starting
03:42:49 (1621546): wrapper: running run_atlas (--nthreads 3)
[2025-07-22 03:42:49] Arguments: --nthreads 3
[2025-07-22 03:42:49] Threads: 3
[2025-07-22 03:42:49] Checking for CVMFS
[2025-07-22 03:42:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-22 03:42:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-22 03:42:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-22 03:42:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-22 03:42:50] 2.9.2.0 1532788 2 30220 148603 1 5 8614202 36864001 0 130560 0 1 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-22 03:42:50] CVMFS is ok
[2025-07-22 03:42:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 03:42:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 03:42:50] Further information can be found at the LHC@home message board.
[2025-07-22 03:42:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 03:42:50] Checking for apptainer binary...
[2025-07-22 03:42:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-22 03:42:50] Running /usr/bin/apptainer --version
[2025-07-22 03:42:50] apptainer version 1.4.1-1.1
[2025-07-22 03:42:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 03:42:51] thA373
[2025-07-22 03:42:51] apptainer works
[2025-07-22 03:42:51] Set ATHENA_PROC_NUMBER=3
[2025-07-22 03:42:51] Set ATHENA_CORE_NUMBER=3
[2025-07-22 03:42:51] Starting ATLAS job with PandaID=6741709475
[2025-07-22 03:42:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 03:51:03]  *** The last 200 lines of the pilot log: ***
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 03:51:03]     _, stdout, stderr = execute(cmd)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 03:51:03]     process = subprocess.Popen(
[2025-07-22 03:51:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 03:51:03]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 03:51:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 03:51:03]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 03:51:03] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f8544a69a00>)
[2025-07-22 03:51:03] Traceback (most recent call last):
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 03:51:03]     self._target(**self.kwargs)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 637, in copytool_out
[2025-07-22 03:51:03]     if _stage_out_new(job, args):
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 1043, in _stage_out_new
[2025-07-22 03:51:03]     create_log(job.workdir, logfile.lfn, tarball_name, args.cleanup,
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/data.py", line 775, in create_log
[2025-07-22 03:51:03]     user.remove_redundant_files(workdir, piloterrors=piloterrors, debugmode=debugmode)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2168, in remove_redundant_files
[2025-07-22 03:51:03]     list_work_dir(workdir)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/user/atlas/common.py", line 2074, in list_work_dir
[2025-07-22 03:51:03]     _, stdout, stderr = execute(cmd)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/util/container.py", line 88, in execute
[2025-07-22 03:51:03]     process = subprocess.Popen(
[2025-07-22 03:51:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-07-22 03:51:03]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-07-22 03:51:03]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-07-22 03:51:03]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-07-22 03:51:03] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 03:51:03] 
[2025-07-22 03:51:03] None
[2025-07-22 03:51:03] exception has been put in bucket queue belonging to thread 'copytool_out'
[2025-07-22 03:51:03] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 03:51:03] 2025-07-22 01:48:40,585 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-07-22 03:51:03] 2025-07-22 01:48:42,537 | INFO     | monitor loop #59: job 0:6741709475 is in state 'failed'
[2025-07-22 03:51:03] 2025-07-22 01:48:42,537 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 03:51:03] 2025-07-22 01:48:45,045 | INFO     | monitor loop #60: job 0:6741709475 is in state 'failed'
[2025-07-22 03:51:03] 2025-07-22 01:48:45,045 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 03:51:03] 2025-07-22 01:48:47,553 | INFO     | monitor loop #61: job 0:6741709475 is in state 'failed'
[2025-07-22 03:51:03] 2025-07-22 01:48:47,553 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 03:51:03] 2025-07-22 01:48:48,176 | INFO     | PID=1666809 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 03:51:03] 2025-07-22 01:48:50,060 | INFO     | monitor loop #62: job 0:6741709475 is in state 'failed'
[2025-07-22 03:51:03] 2025-07-22 01:48:50,060 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-07-22 03:51:03] 2025-07-22 01:48:50,422 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-22 03:51:03] 2025-07-22 01:48:50,422 | INFO     | found 1 job(s) in 20 queues
[2025-07-22 03:51:03] 2025-07-22 01:48:50,422 | INFO     | aborting job 6741709475
[2025-07-22 03:51:03] 2025-07-22 01:48:50,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 03:51:03] 2025-07-22 01:48:50,443 | INFO     | will abort loop
[2025-07-22 03:51:03] 2025-07-22 01:48:50,597 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 03:51:03] 2025-07-22 01:48:50,597 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 03:51:03] 2025-07-22 01:48:50,598 | INFO     | job 6741709475 has state=failed
[2025-07-22 03:51:03] 2025-07-22 01:48:50,598 | INFO     | preparing for final server update for job 6741709475 in state='failed'
[2025-07-22 03:51:03] 2025-07-22 01:48:51,422 | INFO     | all data control threads have been joined
[2025-07-22 03:51:03] 2025-07-22 01:48:51,449 | INFO     | [job] job monitor thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:51,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 03:51:03] 2025-07-22 01:48:51,607 | INFO     | [monitor] control thread has ended
[2025-07-22 03:51:03] 2025-07-22 01:48:51,635 | INFO     | [payload] validate_post thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:51,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 03:51:03] 2025-07-22 01:48:51,757 | INFO     | all payload control threads have been joined
[2025-07-22 03:51:03] 2025-07-22 01:48:51,801 | INFO     | all job control threads have been joined
[2025-07-22 03:51:03] 2025-07-22 01:48:51,835 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:51,903 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,194 | INFO     | [job] retrieve thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,275 | INFO     | [payload] failed_post thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,349 | INFO     | [job] validate thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,429 | INFO     | [data] control thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,740 | INFO     | [data] copytool_in thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,763 | INFO     | [payload] control thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,785 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:52,808 | INFO     | [job] control thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:55,427 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:55,747 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 03:51:03] 2025-07-22 01:48:56,962 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:48:58,974 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:00,988 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:03,000 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:05,013 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:07,025 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:09,038 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:11,050 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:13,062 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:15,072 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:17,083 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:19,094 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:21,106 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:23,118 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:25,131 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:27,141 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:29,153 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:31,163 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:33,176 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:35,189 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:37,200 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:39,213 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:41,225 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:43,236 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:45,246 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:47,257 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:49,269 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:51,280 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:53,291 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:55,302 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:57,313 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:49:59,325 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:01,337 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:03,347 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:05,357 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:07,370 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:09,381 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:11,392 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:13,405 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:15,416 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:17,428 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:19,438 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:21,448 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:23,458 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:25,471 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:27,483 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:29,495 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:31,509 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:33,521 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:35,534 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:37,546 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:39,557 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:41,569 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:43,582 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:45,595 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:45,801 | INFO     | proceeding with final server update
[2025-07-22 03:51:03] 2025-07-22 01:50:45,801 | INFO     | this job has now completed (state=failed)
[2025-07-22 03:51:03] 2025-07-22 01:50:45,801 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-22 03:51:03] 2025-07-22 01:50:45,801 | INFO     | log transfer has not been attempted: IN_PROGRESS
[2025-07-22 03:51:03] 2025-07-22 01:50:45,801 | INFO     | job 6741709475 has state 'failed' - writing heartbeat
[2025-07-22 03:51:03] 2025-07-22 01:50:45,802 | INFO     | payload/TRF did not report the number of read events
[2025-07-22 03:51:03] 2025-07-22 01:50:45,802 | WARNING  | command=lscpu does not exist - cannot check number of available cores
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 03:51:03]     self._target(**self.kwargs)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 03:51:03]     update_server(job, args)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 03:51:03]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 03:51:03]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 03:51:03]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 03:51:03]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 03:51:03] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(116, 'Stale file handle'), <traceback object at 0x7f8545b61140>)
[2025-07-22 03:51:03] Traceback (most recent call last):
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-07-22 03:51:03]     self._target(**self.kwargs)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2797, in queue_monitor
[2025-07-22 03:51:03]     update_server(job, args)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 2846, in update_server
[2025-07-22 03:51:03]     send_state(job, args, job.state, metadata=metadata)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 434, in send_state
[2025-07-22 03:51:03]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/control/job.py", line 769, in get_data_structure
[2025-07-22 03:51:03]     cpumodel = get_cpu_model()  # ARM info will be corrected below if necessary (otherwise cpumodel will contain UNKNOWN)
[2025-07-22 03:51:03]   File "/local/data/boinc/slots/0/pilot3/pilot/util/workernode.py", line 279, in get_cpu_model
[2025-07-22 03:51:03]     with open("/proc/cpuinfo", "r") as _fp:
[2025-07-22 03:51:03] OSError: [Errno 116] Stale file handle: '/proc/cpuinfo'
[2025-07-22 03:51:03] 
[2025-07-22 03:51:03] None
[2025-07-22 03:51:03] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-07-22 03:51:03] setting graceful stop in 10 s since there is no point in continuing
[2025-07-22 03:51:03] 2025-07-22 01:50:47,606 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:49,619 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:51,633 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:53,646 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:55,656 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140210441897792)>', '<ExcThread(queue_monitor, started 140209760999168)>']
[2025-07-22 03:51:03] 2025-07-22 01:50:57,668 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140210441897792)>'])
[2025-07-22 03:51:03] 2025-07-22 01:51:02,694 | INFO     | all workflow threads have been joined
[2025-07-22 03:51:03] 2025-07-22 01:51:02,694 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 03:51:03] 2025-07-22 01:51:02,694 | INFO     | traces error code: 0
[2025-07-22 03:51:03] 2025-07-22 01:51:02,694 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  ==== pilot stdout END ====
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  ==== wrapper stdout RESUME ====
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  pilotpid: 1666809
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  Pilot exit status: 0
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 1018: cut: command not found
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 1018: /usr/bin/cat: Stale file handle
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 1018: xargs: command not found
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  pandaids: 
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 27: ps: command not found
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  No supervise_pilot CHILD process found
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 36: /dev/null: Stale file handle
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  Test setup, not cleaning
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  apfmon messages muted
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 15: date: command not found
[2025-07-22 03:51:03]  ==== wrapper stdout END ====
[2025-07-22 03:51:03] ./runpilot2-wrapper.sh: line 10: date: command not found
[2025-07-22 03:51:03]  ==== wrapper stderr END ====
[2025-07-22 03:51:03]  *** Error codes and diagnostics ***
[2025-07-22 03:51:03]  *** Listing of results directory ***
[2025-07-22 03:51:03] total 311616
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc    530466 Jul 22 02:28 pilot3.tar.gz
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc      5112 Jul 22 02:29 queuedata.json
[2025-07-22 03:51:03] -rwx------ 1 boinc boinc     36292 Jul 22 02:29 runpilot2-wrapper.sh
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc       100 Jul 22 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 03:51:03] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 03:42 run_atlas
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc       105 Jul 22 03:42 job.xml
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc 315115069 Jul 22 03:42 EVNT.45697451._000050.pool.root.1
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc    542908 Jul 22 03:42 input.tar.gz
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc     15095 Jul 22 03:42 start_atlas.sh
[2025-07-22 03:51:03] drwxrwx--x 2 boinc boinc      4096 Jul 22 03:42 shared
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc         0 Jul 22 03:42 boinc_setup_complete
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc      6271 Jul 22 03:42 init_data.xml
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc         0 Jul 22 03:42 boinc_lockfile
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc      2633 Jul 22 03:42 pandaJob.out
[2025-07-22 03:51:03] -rw------- 1 boinc boinc    977318 Jul 22 03:44 agis_schedconf.cvmfs.json
[2025-07-22 03:51:03] -rw------- 1 boinc boinc   1593055 Jul 22 03:44 agis_ddmendpoints.agis.ALL.json
[2025-07-22 03:51:03] drwx------ 4 boinc boinc      4096 Jul 22 03:44 pilot3
[2025-07-22 03:51:03] -rw------- 1 boinc boinc       735 Jul 22 03:47 heartbeat.json
[2025-07-22 03:51:03] -rw------- 1 boinc boinc        95 Jul 22 03:48 pilot_heartbeat.json
[2025-07-22 03:51:03] -rw------- 1 boinc boinc       950 Jul 22 03:48 memory_monitor_summary.json
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc       523 Jul 22 03:48 boinc_task_state.xml
[2025-07-22 03:51:03] drwxrwx--- 2 boinc boinc      4096 Jul 22 03:48 PanDA_Pilot-6741709475
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc        22 Jul 22 03:50 wrapper_checkpoint.txt
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc      8192 Jul 22 03:50 boinc_mmap_file
[2025-07-22 03:51:03] -rw------- 1 boinc boinc     56830 Jul 22 03:51 pilotlog.txt
[2025-07-22 03:51:03] -rw------- 1 boinc boinc     74553 Jul 22 03:51 log.45697453._001245.job.log.1
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc       428 Jul 22 03:51 runtime_log
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc      8610 Jul 22 03:51 runtime_log.err
[2025-07-22 03:51:03] -rw------- 1 boinc boinc       621 Jul 22 03:51 AE3KDmb3Fy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlytKDmVHweEo.diag
[2025-07-22 03:51:03] -rw-r--r-- 1 boinc boinc     27709 Jul 22 03:51 stderr.txt
[2025-07-22 03:51:03] No HITS result produced
[2025-07-22 03:51:03]  *** Contents of shared directory: ***
[2025-07-22 03:51:03] total 308284
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc 315115069 Jul 22 03:42 ATLAS.root_0
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc    542908 Jul 22 03:42 input.tar.gz
[2025-07-22 03:51:03] -rw-r--r-- 2 boinc boinc     15095 Jul 22 03:42 start_atlas.sh
03:51:04 (1621546): run_atlas exited; CPU time 27.167083
03:51:04 (1621546): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>AE3KDmb3Fy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlytKDmVHweEo_0_r1415194308_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>

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