Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:27 (1494396): wrapper (7.7.26015): starting
17:56:27 (1494396): wrapper: running run_atlas (--nthreads 12)
[2025-07-21 17:56:27] Arguments: --nthreads 12
[2025-07-21 17:56:27] Threads: 12
[2025-07-21 17:56:27] Checking for CVMFS
[2025-07-21 17:56:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 17:56:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 17:56:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 17:56:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 17:56:29] 2.11.5.0 7890 29249 360496 148602 3 507 36467978 45568001 18378 130560 0 161966073 99.677 148991083 22362 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-21 17:56:29] CVMFS is ok
[2025-07-21 17:56:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 17:56:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 17:56:29] Further information can be found at the LHC@home message board.
[2025-07-21 17:56:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 17:56:29] Checking for apptainer binary...
[2025-07-21 17:56:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 17:56:29] Running /usr/bin/apptainer --version
[2025-07-21 17:56:29] apptainer version 1.4.1-1.el9
[2025-07-21 17:56:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 17:56:29] wns0052.triumf.lcg
[2025-07-21 17:56:29] apptainer works
[2025-07-21 17:56:29] Set ATHENA_PROC_NUMBER=12
[2025-07-21 17:56:29] Set ATHENA_CORE_NUMBER=12
[2025-07-21 17:56:29] Starting ATLAS job with PandaID=6741823613
[2025-07-21 17:56:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 18:00:48]  *** The last 200 lines of the pilot log: ***
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | WARNING  | wrong length of table data, x=[1753145854.0], y=[1644.0] (must be same and length>=4)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | could have reported an average CPU frequency of 2055 MHz (4 samples)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . Timing measurements:
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . get job = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . initial setup = 3 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload setup = 14 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-in = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload execution = 35 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-out = 1 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . log creation = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741823613/pilotlog.txt
[2025-07-21 18:00:48] 2025-07-22 01:00:15,011 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 18:00:48] - Log from pilotlog.txt -
[2025-07-21 18:00:48] 2025-07-22 01:00:14,995 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741823613/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | INFO     | extracted standard info from prmon json
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | WARNING  | wrong length of table data, x=[1753145854.0], y=[1644.0] (must be same and length>=4)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | could have reported an average CPU frequency of 2055 MHz (4 samples)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . Timing measurements:
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . get job = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . initial setup = 3 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload setup = 14 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-in = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload execution = 35 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-out = 1 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . log creation = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741823613/pilotlog.txt
[2025-07-21 18:00:48] 2025-07-22 01:00:15,012 | WARNING  | 
[2025-07-21 18:00:48] [begin log extracts]
[2025-07-21 18:00:48] - Log from pilotlog.txt -
[2025-07-21 18:00:48] 2025-07-22 01:00:14,995 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741823613/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | INFO     | extracted standard info from prmon json
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 18:00:48] 2025-07-22 01:00:14,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | WARNING  | wrong length of table data, x=[1753145854.0], y=[1644.0] (must be same and length>=4)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | could have reported an average CPU frequency of 2055 MHz (4 samples)
[2025-07-21 18:00:48] 2025-07-22 01:00:14,997 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . Timing measurements:
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . get job = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . initial setup = 3 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload setup = 14 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-in = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . payload execution = 35 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . stage-out = 1 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | . log creation = 0 s
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | ..............................
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:00:48] 2025-07-22 01:00:14,998 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741823613/pilotlog.txt
[2025-07-21 18:00:48] [end log extracts]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,012 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 18:00:48] 2025-07-22 01:00:15,013 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 18:00:48] 2025-07-22 01:00:15,088 | INFO     | 
[2025-07-21 18:00:48] 2025-07-22 01:00:15,088 | INFO     | job summary report
[2025-07-21 18:00:48] 2025-07-22 01:00:15,088 | INFO     | --------------------------------------------------
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | PanDA job id: 6741823613
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | task id: 45697532
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 17:57:55,743 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | pilot state: failed 
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | transexitcode: 65
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | exeerrorcode: 65
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | exitcode: 65
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | cpuconsumptiontime: 21 s
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | nevents: 0
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | neventsw: 0
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | pid: 1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | pgrp: 1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | corecount: 12
[2025-07-21 18:00:48] 2025-07-22 01:00:15,089 | INFO     | event service: False
[2025-07-21 18:00:48] 2025-07-22 01:00:15,090 | INFO     | sizes: {0: 2397427, 1: 2397569, 11: 2397859, 53: 2421014, 55: 2425306, 59: 2425394, 185: 2425688}
[2025-07-21 18:00:48] 2025-07-22 01:00:15,090 | INFO     | --------------------------------------------------
[2025-07-21 18:00:48] 2025-07-22 01:00:15,090 | INFO     | 
[2025-07-21 18:00:48] 2025-07-22 01:00:15,090 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 18:00:48] 2025-07-22 01:00:15,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,106 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | job 6741823613 has completed (purged errors)
[2025-07-21 18:00:48] 2025-07-22 01:00:15,107 | INFO     | overall cleanup function is called
[2025-07-21 18:00:48] 2025-07-22 01:00:16,115 | INFO     | --- collectZombieJob: --- 10, [1511292]
[2025-07-21 18:00:48] 2025-07-22 01:00:16,115 | INFO     | zombie collector waiting for pid 1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:16,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 18:00:48] 2025-07-22 01:00:16,116 | INFO     | collected zombie processes
[2025-07-21 18:00:48] 2025-07-22 01:00:16,116 | INFO     | will attempt to kill all subprocesses of pid=1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:16,902 | INFO     | process IDs to be killed: [1511292] (in reverse order)
[2025-07-21 18:00:48] 2025-07-22 01:00:17,018 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 18:00:48] 2025-07-22 01:00:17,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 18:00:48] 2025-07-22 01:00:17,029 | INFO     | did not find any defunct processes belonging to 1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:17,040 | INFO     | did not find any defunct processes belonging to 1511292
[2025-07-21 18:00:48] 2025-07-22 01:00:17,041 | INFO     | ready for new job
[2025-07-21 18:00:48] 2025-07-22 01:00:17,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 18:00:48] 2025-07-22 01:00:17,043 | INFO     | ***************************************
[2025-07-21 18:00:48] 2025-07-22 01:00:17,043 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 18:00:48] 2025-07-22 01:00:17,043 | INFO     | ***************************************
[2025-07-21 18:00:48] 2025-07-22 01:00:17,043 | INFO     | 
[2025-07-21 18:00:48] 2025-07-22 01:00:17,046 | INFO     | architecture information:
[2025-07-21 18:00:48] 2025-07-22 01:00:17,046 | INFO     | executing command: cat /etc/os-release
[2025-07-21 18:00:48] 2025-07-22 01:00:17,060 | INFO     | cat /etc/os-release:
[2025-07-21 18:00:48] NAME="CentOS Linux"
[2025-07-21 18:00:48] VERSION="7 (Core)"
[2025-07-21 18:00:48] ID="centos"
[2025-07-21 18:00:48] ID_LIKE="rhel fedora"
[2025-07-21 18:00:48] VERSION_ID="7"
[2025-07-21 18:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 18:00:48] ANSI_COLOR="0;31"
[2025-07-21 18:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 18:00:48] HOME_URL="https://www.centos.org/"
[2025-07-21 18:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 18:00:48] 
[2025-07-21 18:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 18:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 18:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 18:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 18:00:48] 
[2025-07-21 18:00:48] 2025-07-22 01:00:17,060 | INFO     | ***************************************
[2025-07-21 18:00:48] 2025-07-22 01:00:17,561 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 18:00:48] 2025-07-22 01:00:17,583 | INFO     | sufficient remaining disk space (1811480051712 B)
[2025-07-21 18:00:48] 2025-07-22 01:00:17,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 18:00:48] 2025-07-22 01:00:17,584 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 18:00:48] 2025-07-22 01:00:17,585 | INFO     | update_server=False
[2025-07-21 18:00:48] 2025-07-22 01:00:17,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 18:00:48] 2025-07-22 01:00:17,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 18:00:48] 2025-07-22 01:00:17,585 | INFO     | aborting loop
[2025-07-21 18:00:48] 2025-07-22 01:00:17,720 | INFO     | all data control threads have been joined
[2025-07-21 18:00:48] 2025-07-22 01:00:17,895 | INFO     | all job control threads have been joined
[2025-07-21 18:00:48] 2025-07-22 01:00:18,388 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 18:00:48] 2025-07-22 01:00:18,605 | INFO     | [job] retrieve thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:18,607 | INFO     | [job] job monitor thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:18,726 | INFO     | [data] control thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:18,901 | INFO     | [job] control thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:18,923 | INFO     | all payload control threads have been joined
[2025-07-21 18:00:48] 2025-07-22 01:00:19,098 | INFO     | [data] copytool_in thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,186 | INFO     | [job] validate thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,446 | INFO     | [payload] failed_post thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,497 | INFO     | [payload] validate_post thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,579 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,584 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,726 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:19,929 | INFO     | [payload] control thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:20,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:20,109 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 18:00:48] 2025-07-22 01:00:20,395 | INFO     | [data] copytool_out thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:21,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 18:00:48] 2025-07-22 01:00:21,115 | INFO     | [job] queue monitor thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:25,055 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 18:00:48] 2025-07-22 01:00:25,505 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402329032512)>', '<ExcThread(monitor, started 140401767851776)>']
[2025-07-21 18:00:48] 2025-07-22 01:00:30,531 | INFO     | all workflow threads have been joined
[2025-07-21 18:00:48] 2025-07-22 01:00:30,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 18:00:48] 2025-07-22 01:00:30,532 | INFO     | traces error code: 0
[2025-07-21 18:00:48] 2025-07-22 01:00:30,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 18:00:48] 2025-07-22 01:00:47,620 | INFO     | PID=1503358 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 18:00:48] 2025-07-22 01:00:47,620 | INFO     | .. there are 42 such processes running
[2025-07-21 18:00:48] 2025-07-22 01:00:47,621 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 18:00:48] 2025-07-22 01:00:47,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 18:00:48] 2025-07-22 01:00:47,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 18:00:48] 2025-07-22 01:00:47,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 18:00:48] 2025-07-22 01:00:47,622 | INFO     | [monitor] control thread has ended
[2025-07-21 18:00:48] 2025-07-22 01:00:47,889 [wrapper] ==== pilot stdout END ====
[2025-07-21 18:00:48] 2025-07-22 01:00:47,915 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 18:00:48] 2025-07-22 01:00:47,946 [wrapper] pilotpid: 1503358
[2025-07-21 18:00:48] 2025-07-22 01:00:47,982 [wrapper] Pilot exit status: 0
[2025-07-21 18:00:48] 2025-07-22 01:00:48,118 [wrapper] pandaids: 6741823613
[2025-07-21 18:00:48] 2025-07-22 01:00:48,292 [wrapper] cleanup supervisor_pilot 1503369 1503359
[2025-07-21 18:00:48] 2025-07-22 01:00:48,295 [wrapper] Test setup, not cleaning
[2025-07-21 18:00:48] 2025-07-22 01:00:48,297 [wrapper] apfmon messages muted
[2025-07-21 18:00:48] 2025-07-22 01:00:48,300 [wrapper] ==== wrapper stdout END ====
[2025-07-21 18:00:48] 2025-07-22 01:00:48,303 [wrapper] ==== wrapper stderr END ====
[2025-07-21 18:00:48]  *** Error codes and diagnostics ***
[2025-07-21 18:00:48]     "exeErrorCode": 65,
[2025-07-21 18:00:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 18:00:48]     "pilotErrorCode": 1305,
[2025-07-21 18:00:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 18:00:48]  *** Listing of results directory ***
[2025-07-21 18:00:48] total 326824
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc    530466 Jul 21 16:18 pilot3.tar.gz
[2025-07-21 18:00:48] -rwx------. 1 boinc boinc     36292 Jul 21 16:50 runpilot2-wrapper.sh
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc      5112 Jul 21 16:50 queuedata.json
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc       100 Jul 21 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 18:00:48] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 17:56 run_atlas
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc       105 Jul 21 17:56 job.xml
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc      6592 Jul 21 17:56 init_data.xml
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc 330593310 Jul 21 17:56 EVNT.45697530._000131.pool.root.1
[2025-07-21 18:00:48] drwxrwx--x. 2 boinc boinc      4096 Jul 21 17:56 shared
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc    542891 Jul 21 17:56 input.tar.gz
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc     15095 Jul 21 17:56 start_atlas.sh
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc         0 Jul 21 17:56 boinc_lockfile
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc      2611 Jul 21 17:56 pandaJob.out
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc    977326 Jul 21 17:56 agis_schedconf.cvmfs.json
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc   1593055 Jul 21 17:56 agis_ddmendpoints.agis.ALL.json
[2025-07-21 18:00:48] drwx------. 4 boinc boinc      4096 Jul 21 17:56 pilot3
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc       522 Jul 21 17:57 boinc_task_state.xml
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc       955 Jul 21 17:57 memory_monitor_summary.json
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc     19905 Jul 21 17:58 log.45697532._003253.job.log.tgz.1
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc      8381 Jul 21 18:00 heartbeat.json
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc      8192 Jul 21 18:00 boinc_mmap_file
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc        22 Jul 21 18:00 wrapper_checkpoint.txt
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc        95 Jul 21 18:00 pilot_heartbeat.json
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc       823 Jul 21 18:00 pilotlog.txt
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc     78501 Jul 21 18:00 log.45697532._003253.job.log.1
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc       188 Jul 21 18:00 output.list
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc       620 Jul 21 18:00 runtime_log
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc    122880 Jul 21 18:00 result.tar.gz
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc      8485 Jul 21 18:00 runtime_log.err
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc       645 Jul 21 18:00 i1FLDmOSFy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwMHLDmhS1ajm.diag
[2025-07-21 18:00:48] -rw-r--r--. 1 boinc boinc     21791 Jul 21 18:00 stderr.txt
[2025-07-21 18:00:48] No HITS result produced
[2025-07-21 18:00:48]  *** Contents of shared directory: ***
[2025-07-21 18:00:48] total 323520
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc 330593310 Jul 21 17:56 ATLAS.root_0
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc    542891 Jul 21 17:56 input.tar.gz
[2025-07-21 18:00:48] -rw-r--r--. 2 boinc boinc     15095 Jul 21 17:56 start_atlas.sh
[2025-07-21 18:00:48] -rw-------. 1 boinc boinc    122880 Jul 21 18:00 result.tar.gz
18:00:49 (1494396): run_atlas exited; CPU time 27.741638
18:00:49 (1494396): called boinc_finish(0)

</stderr_txt>
]]>

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