Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:10 (3048894): wrapper (7.7.26015): starting
18:03:10 (3048894): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 18:03:10] Arguments: --nthreads 8
[2025-07-21 18:03:10] Threads: 8
[2025-07-21 18:03:10] Checking for CVMFS
[2025-07-21 18:03:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 18:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 18:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 18:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 18:03:12] 2.11.3.0 231875 471027 200036 148602 0 318 37826871 45568000 14683 130560 0 2542339608 99.771 1884707015 19032 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-21 18:03:12] CVMFS is ok
[2025-07-21 18:03:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 18:03:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 18:03:12] Further information can be found at the LHC@home message board.
[2025-07-21 18:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 18:03:12] Checking for apptainer binary...
[2025-07-21 18:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 18:03:12] Running /usr/bin/apptainer --version
[2025-07-21 18:03:12] apptainer version 1.3.3-1.el9
[2025-07-21 18:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 18:03:12] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0019.triumf.lcg
[2025-07-21 18:03:12] apptainer works
[2025-07-21 18:03:12] Set ATHENA_PROC_NUMBER=8
[2025-07-21 18:03:12] Set ATHENA_CORE_NUMBER=8
[2025-07-21 18:03:12] Starting ATLAS job with PandaID=6741801418
[2025-07-21 18:03:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 18:08:33]  *** The last 200 lines of the pilot log: ***
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | wrong length of table data, x=[1753146315.0], y=[1987.0] (must be same and length>=4)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . Timing measurements:
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . get job = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . initial setup = 5 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload setup = 33 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-in = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload execution = 45 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-out = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . log creation = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:08:33] 2025-07-22 01:08:00,327 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741801418/pilotlog.txt
[2025-07-21 18:08:33] 2025-07-22 01:08:00,339 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 18:08:33] - Log from pilotlog.txt -
[2025-07-21 18:08:33] 2025-07-22 01:08:00,323 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741801418/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | INFO     | extracted standard info from prmon json
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | wrong length of table data, x=[1753146315.0], y=[1987.0] (must be same and length>=4)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . Timing measurements:
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . get job = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . initial setup = 5 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload setup = 33 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-in = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload execution = 45 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-out = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . log creation = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:08:33] 2025-07-22 01:08:00,327 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741801418/pilotlog.txt
[2025-07-21 18:08:33] 2025-07-22 01:08:00,339 | WARNING  | 
[2025-07-21 18:08:33] [begin log extracts]
[2025-07-21 18:08:33] - Log from pilotlog.txt -
[2025-07-21 18:08:33] 2025-07-22 01:08:00,323 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741801418/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | INFO     | extracted standard info from prmon json
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 18:08:33] 2025-07-22 01:08:00,324 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | WARNING  | wrong length of table data, x=[1753146315.0], y=[1987.0] (must be same and length>=4)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,325 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . Timing measurements:
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . get job = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . initial setup = 5 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload setup = 33 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-in = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . payload execution = 45 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . stage-out = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | . log creation = 0 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | ..............................
[2025-07-21 18:08:33] 2025-07-22 01:08:00,326 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 18:08:33] 2025-07-22 01:08:00,327 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741801418/pilotlog.txt
[2025-07-21 18:08:33] [end log extracts]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,340 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,340 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 18:08:33] 2025-07-22 01:08:00,530 | INFO     | 
[2025-07-21 18:08:33] 2025-07-22 01:08:00,530 | INFO     | job summary report
[2025-07-21 18:08:33] 2025-07-22 01:08:00,530 | INFO     | --------------------------------------------------
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | PanDA job id: 6741801418
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | task id: 45697532
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 18:05:37,062 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | pilot state: failed 
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | transexitcode: 65
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | exeerrorcode: 65
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | exitcode: 65
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | cpuconsumptiontime: 17 s
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | nevents: 0
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | neventsw: 0
[2025-07-21 18:08:33] 2025-07-22 01:08:00,531 | INFO     | pid: 3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | pgrp: 3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | corecount: 8
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | event service: False
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | sizes: {0: 2397543, 11: 2397543, 13: 2397833, 22: 2397889, 82: 2421325, 84: 2425773, 216: 2425911}
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | --------------------------------------------------
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | 
[2025-07-21 18:08:33] 2025-07-22 01:08:00,532 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 18:08:33] 2025-07-22 01:08:00,548 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 18:08:33] 2025-07-22 01:08:00,550 | INFO     | job 6741801418 has completed (purged errors)
[2025-07-21 18:08:33] 2025-07-22 01:08:00,551 | INFO     | overall cleanup function is called
[2025-07-21 18:08:33] 2025-07-22 01:08:01,557 | INFO     | --- collectZombieJob: --- 10, [3058825]
[2025-07-21 18:08:33] 2025-07-22 01:08:01,557 | INFO     | zombie collector waiting for pid 3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:01,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 18:08:33] 2025-07-22 01:08:01,558 | INFO     | collected zombie processes
[2025-07-21 18:08:33] 2025-07-22 01:08:01,558 | INFO     | will attempt to kill all subprocesses of pid=3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:01,788 | INFO     | process IDs to be killed: [3058825] (in reverse order)
[2025-07-21 18:08:33] 2025-07-22 01:08:01,855 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 18:08:33] 2025-07-22 01:08:01,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 18:08:33] 2025-07-22 01:08:01,864 | INFO     | did not find any defunct processes belonging to 3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:01,872 | INFO     | did not find any defunct processes belonging to 3058825
[2025-07-21 18:08:33] 2025-07-22 01:08:01,872 | INFO     | ready for new job
[2025-07-21 18:08:33] 2025-07-22 01:08:01,873 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 18:08:33] 2025-07-22 01:08:01,874 | INFO     | ***************************************
[2025-07-21 18:08:33] 2025-07-22 01:08:01,874 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 18:08:33] 2025-07-22 01:08:01,874 | INFO     | ***************************************
[2025-07-21 18:08:33] 2025-07-22 01:08:01,874 | INFO     | 
[2025-07-21 18:08:33] 2025-07-22 01:08:01,887 | INFO     | architecture information:
[2025-07-21 18:08:33] 2025-07-22 01:08:01,888 | INFO     | executing command: cat /etc/os-release
[2025-07-21 18:08:33] 2025-07-22 01:08:01,899 | INFO     | cat /etc/os-release:
[2025-07-21 18:08:33] NAME="CentOS Linux"
[2025-07-21 18:08:33] VERSION="7 (Core)"
[2025-07-21 18:08:33] ID="centos"
[2025-07-21 18:08:33] ID_LIKE="rhel fedora"
[2025-07-21 18:08:33] VERSION_ID="7"
[2025-07-21 18:08:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 18:08:33] ANSI_COLOR="0;31"
[2025-07-21 18:08:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 18:08:33] HOME_URL="https://www.centos.org/"
[2025-07-21 18:08:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 18:08:33] 
[2025-07-21 18:08:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 18:08:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 18:08:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 18:08:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 18:08:33] 
[2025-07-21 18:08:33] 2025-07-22 01:08:01,899 | INFO     | ***************************************
[2025-07-21 18:08:33] 2025-07-22 01:08:02,402 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 18:08:33] 2025-07-22 01:08:02,435 | INFO     | sufficient remaining disk space (1118715248640 B)
[2025-07-21 18:08:33] 2025-07-22 01:08:02,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 18:08:33] 2025-07-22 01:08:02,435 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 18:08:33] 2025-07-22 01:08:02,435 | INFO     | update_server=False
[2025-07-21 18:08:33] 2025-07-22 01:08:02,436 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 18:08:33] 2025-07-22 01:08:02,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 18:08:33] 2025-07-22 01:08:02,549 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-21 18:08:33] 2025-07-22 01:08:02,549 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-21 18:08:33] 2025-07-22 01:08:02,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 18:08:33] 2025-07-22 01:08:02,550 | INFO     | will abort loop
[2025-07-21 18:08:33] 2025-07-22 01:08:02,968 | INFO     | all payload control threads have been joined
[2025-07-21 18:08:33] 2025-07-22 01:08:03,374 | INFO     | all data control threads have been joined
[2025-07-21 18:08:33] 2025-07-22 01:08:03,441 | INFO     | [job] retrieve thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,442 | INFO     | [job] queue monitor thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,559 | INFO     | [job] job monitor thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,569 | INFO     | [data] copytool_in thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,793 | INFO     | all job control threads have been joined
[2025-07-21 18:08:33] 2025-07-22 01:08:03,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 18:08:33] 2025-07-22 01:08:03,897 | INFO     | [job] validate thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,975 | INFO     | [payload] control thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:03,985 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,380 | INFO     | [data] control thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,467 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,618 | INFO     | [payload] validate_post thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,710 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,769 | INFO     | [payload] failed_post thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:04,799 | INFO     | [job] control thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:05,094 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 18:08:33] 2025-07-22 01:08:05,889 | INFO     | [data] copytool_out thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:09,103 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 18:08:33] 2025-07-22 01:08:10,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096642860864)>', '<ExcThread(monitor, started 140096120547072)>']
[2025-07-21 18:08:33] 2025-07-22 01:08:15,764 | INFO     | all workflow threads have been joined
[2025-07-21 18:08:33] 2025-07-22 01:08:15,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 18:08:33] 2025-07-22 01:08:15,765 | INFO     | traces error code: 0
[2025-07-21 18:08:33] 2025-07-22 01:08:15,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 18:08:33] 2025-07-22 01:08:30,691 | INFO     | 262s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | INFO     | PID=3052480 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | INFO     | .. there are 33 such processes running
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 18:08:33] 2025-07-22 01:08:32,492 | CRITICAL | thread 'MainThread' is not alive
[2025-07-21 18:08:33] 2025-07-22 01:08:32,493 | INFO     | [monitor] control thread has ended
[2025-07-21 18:08:33] 2025-07-22 01:08:32,595 [wrapper] ==== pilot stdout END ====
[2025-07-21 18:08:33] 2025-07-22 01:08:32,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 18:08:33] 2025-07-22 01:08:32,599 [wrapper] pilotpid: 3052480
[2025-07-21 18:08:33] 2025-07-22 01:08:32,601 [wrapper] Pilot exit status: 0
[2025-07-21 18:08:33] 2025-07-22 01:08:32,613 [wrapper] pandaids: 6741801418
[2025-07-21 18:08:33] 2025-07-22 01:08:32,660 [wrapper] cleanup supervisor_pilot 3052486 3052481
[2025-07-21 18:08:33] 2025-07-22 01:08:32,672 [wrapper] Test setup, not cleaning
[2025-07-21 18:08:33] 2025-07-22 01:08:32,686 [wrapper] apfmon messages muted
[2025-07-21 18:08:33] 2025-07-22 01:08:32,689 [wrapper] ==== wrapper stdout END ====
[2025-07-21 18:08:33] 2025-07-22 01:08:32,719 [wrapper] ==== wrapper stderr END ====
[2025-07-21 18:08:33]  *** Error codes and diagnostics ***
[2025-07-21 18:08:33]     "exeErrorCode": 65,
[2025-07-21 18:08:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 18:08:33]     "pilotErrorCode": 1305,
[2025-07-21 18:08:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 18:08:33]  *** Listing of results directory ***
[2025-07-21 18:08:33] total 328168
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc    530466 Jul 21 16:18 pilot3.tar.gz
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc      5112 Jul 21 16:48 queuedata.json
[2025-07-21 18:08:33] -rwx------. 1 boinc boinc     36292 Jul 21 16:49 runpilot2-wrapper.sh
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc       100 Jul 21 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 18:08:33] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 18:03 run_atlas
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc       105 Jul 21 18:03 job.xml
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc 331963912 Jul 21 18:03 EVNT.45697530._000129.pool.root.1
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc      6449 Jul 21 18:03 init_data.xml
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc     15095 Jul 21 18:03 start_atlas.sh
[2025-07-21 18:08:33] drwxrwx--x. 2 boinc boinc      4096 Jul 21 18:03 shared
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc    542902 Jul 21 18:03 input.tar.gz
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc         0 Jul 21 18:03 boinc_lockfile
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc      2612 Jul 21 18:03 pandaJob.out
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc    977326 Jul 21 18:03 agis_schedconf.cvmfs.json
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc   1593055 Jul 21 18:03 agis_ddmendpoints.agis.ALL.json
[2025-07-21 18:08:33] drwx------. 4 boinc boinc      4096 Jul 21 18:03 pilot3
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc       524 Jul 21 18:05 boinc_task_state.xml
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc       961 Jul 21 18:05 memory_monitor_summary.json
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc     21610 Jul 21 18:05 log.45697532._003207.job.log.tgz.1
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc        95 Jul 21 18:07 pilot_heartbeat.json
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc      8384 Jul 21 18:08 heartbeat.json
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc      8192 Jul 21 18:08 boinc_mmap_file
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc        23 Jul 21 18:08 wrapper_checkpoint.txt
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc      1007 Jul 21 18:08 pilotlog.txt
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc     82206 Jul 21 18:08 log.45697532._003207.job.log.1
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc       188 Jul 21 18:08 output.list
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc       620 Jul 21 18:08 runtime_log
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc    122880 Jul 21 18:08 result.tar.gz
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc      8648 Jul 21 18:08 runtime_log.err
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc       645 Jul 21 18:08 RgPMDmORFy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbMHLDmF7nFSo.diag
[2025-07-21 18:08:33] -rw-r--r--. 1 boinc boinc     22005 Jul 21 18:08 stderr.txt
[2025-07-21 18:08:33] No HITS result produced
[2025-07-21 18:08:33]  *** Contents of shared directory: ***
[2025-07-21 18:08:33] total 324856
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc 331963912 Jul 21 18:03 ATLAS.root_0
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc     15095 Jul 21 18:03 start_atlas.sh
[2025-07-21 18:08:33] -rw-r--r--. 2 boinc boinc    542902 Jul 21 18:03 input.tar.gz
[2025-07-21 18:08:33] -rw-------. 1 boinc boinc    122880 Jul 21 18:08 result.tar.gz
18:08:35 (3048894): run_atlas exited; CPU time 28.609094
18:08:35 (3048894): called boinc_finish(0)

</stderr_txt>
]]>

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