Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:48:03 (3235816): wrapper (7.7.26015): starting
20:48:03 (3235816): wrapper: running run_atlas (--nthreads 4)
[2025-07-24 20:48:03] Arguments: --nthreads 4
[2025-07-24 20:48:03] Threads: 4
[2025-07-24 20:48:03] Checking for CVMFS
[2025-07-24 20:48:03] No cvmfs_config command found, will try listing directly
[2025-07-24 20:48:03] CVMFS is ok
[2025-07-24 20:48:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-24 20:48:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-24 20:48:03] Further information can be found at the LHC@home message board.
[2025-07-24 20:48:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-24 20:48:03] Checking for apptainer binary...
[2025-07-24 20:48:03] which: no apptainer in ((null))
[2025-07-24 20:48:03] apptainer is not installed, using version from CVMFS
[2025-07-24 20:48:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-24 20:48:03] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-24 20:48:03] apptainer works
[2025-07-24 20:48:03] Set ATHENA_PROC_NUMBER=4
[2025-07-24 20:48:03] Set ATHENA_CORE_NUMBER=4
[2025-07-24 20:48:03] Starting ATLAS job with PandaID=6741801354
[2025-07-24 20:48:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:09:35 (7931): wrapper (7.7.26015): starting
00:09:35 (7931): wrapper: running run_atlas (--nthreads 4)
[2025-07-25 00:09:35] Arguments: --nthreads 4
[2025-07-25 00:09:35] Threads: 4
[2025-07-25 00:09:35] This job has been restarted, cleaning up previous attempt
[2025-07-25 00:09:35] Checking for CVMFS
[2025-07-25 00:09:35] No cvmfs_config command found, will try listing directly
[2025-07-25 00:09:35] CVMFS is ok
[2025-07-25 00:09:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-25 00:09:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-25 00:09:35] Further information can be found at the LHC@home message board.
[2025-07-25 00:09:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-25 00:09:35] Checking for apptainer binary...
[2025-07-25 00:09:35] which: no apptainer in ((null))
[2025-07-25 00:09:35] apptainer is not installed, using version from CVMFS
[2025-07-25 00:09:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-25 00:09:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot68/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-25 00:09:36] apptainer works
[2025-07-25 00:09:36] Set ATHENA_PROC_NUMBER=4
[2025-07-25 00:09:36] Set ATHENA_CORE_NUMBER=4
[2025-07-25 00:09:36] Starting ATLAS job with PandaID=6741801354
[2025-07-25 00:09:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot68/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-25 03:40:40]  *** The last 200 lines of the pilot log: ***
[2025-07-25 03:40:40] 2025-07-25 01:40:04,709 | INFO     | mean y: 2344100.8309178744
[2025-07-25 03:40:40] 2025-07-25 01:40:04,709 | INFO     | -- intersect: -9514743834.25033
[2025-07-25 03:40:40] 2025-07-25 01:40:04,709 | INFO     | intersect: -9514743834.25033
[2025-07-25 03:40:40] 2025-07-25 01:40:04,710 | INFO     | chi2: 2.1262955586999253
[2025-07-25 03:40:40] 2025-07-25 01:40:04,710 | INFO     | sum of square deviations: 2555770710.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,711 | INFO     | sum of deviations: 27583449913.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | mean x: 1753401151.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | mean y: 2353818.6881188117
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | -- intersect: -18921430166.304646
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | intersect: -18921430166.304646
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | chi2: 1.3192221259126176
[2025-07-25 03:40:40] 2025-07-25 01:40:04,712 | INFO     | current chi2=1.3192221259126176 (change=37.956784958003404 %)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,713 | INFO     | sum of square deviations: 2370641658.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,714 | INFO     | sum of deviations: 26767377059.999996
[2025-07-25 03:40:40] 2025-07-25 01:40:04,714 | INFO     | mean x: 1753400999.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,714 | INFO     | mean y: 2353146.492385787
[2025-07-25 03:40:40] 2025-07-25 01:40:04,714 | INFO     | -- intersect: -19795639316.531174
[2025-07-25 03:40:40] 2025-07-25 01:40:04,714 | INFO     | intersect: -19795639316.531174
[2025-07-25 03:40:40] 2025-07-25 01:40:04,715 | INFO     | chi2: 1.319886572214792
[2025-07-25 03:40:40] 2025-07-25 01:40:04,715 | INFO     | current chi2=1.319886572214792 (change=-0.05036652199226075 %)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,715 | INFO     | right removable region: 196
[2025-07-25 03:40:40] 2025-07-25 01:40:04,715 | INFO     | sum of square deviations: 2555770710.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,716 | INFO     | sum of deviations: -10677297229.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | mean x: 1753401456.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | mean y: 2363900.618811881
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | -- intersect: 7327586165.97066
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | intersect: 7327586165.97066
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | chi2: 0.8275719766346193
[2025-07-25 03:40:40] 2025-07-25 01:40:04,717 | INFO     | current chi2=0.8275719766346193 (change=61.079165441110206 %)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,718 | INFO     | sum of square deviations: 2370641658.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,719 | INFO     | sum of deviations: -11408540006.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,719 | INFO     | mean x: 1753401609.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,719 | INFO     | mean y: 2364501.1015228424
[2025-07-25 03:40:40] 2025-07-25 01:40:04,719 | INFO     | -- intersect: 8440481808.015594
[2025-07-25 03:40:40] 2025-07-25 01:40:04,719 | INFO     | intersect: 8440481808.015594
[2025-07-25 03:40:40] 2025-07-25 01:40:04,720 | INFO     | chi2: 0.8269637898317163
[2025-07-25 03:40:40] 2025-07-25 01:40:04,720 | INFO     | current chi2=0.8269637898317163 (change=0.07349050234594978 %)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,720 | INFO     | left removable region: 20
[2025-07-25 03:40:40] 2025-07-25 01:40:04,720 | INFO     | sum of square deviations: 1690450300.0
[2025-07-25 03:40:40] 2025-07-25 01:40:04,721 | INFO     | sum of deviations: 540537683.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,721 | INFO     | mean x: 1753401578.5
[2025-07-25 03:40:40] 2025-07-25 01:40:04,721 | INFO     | mean y: 2375634.3806818184
[2025-07-25 03:40:40] 2025-07-25 01:40:04,721 | INFO     | -- intersect: -558291323.7000339
[2025-07-25 03:40:40] 2025-07-25 01:40:04,721 | INFO     | intersect: -558291323.7000339
[2025-07-25 03:40:40] 2025-07-25 01:40:04,722 | INFO     | chi2: 0.00022663784702122325
[2025-07-25 03:40:40] 2025-07-25 01:40:04,722 | INFO     | -- intersect: -558291323.7000339
[2025-07-25 03:40:40] 2025-07-25 01:40:04,722 | INFO     | current memory leak: 0.32 B/s (using 176 data points, chi2=0.00)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | could have reported an average CPU frequency of 2722 MHz (10 samples)
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | ..............................
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . Timing measurements:
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . get job = 0 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . initial setup = 1 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . payload setup = 9 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . stage-in = 0 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . payload execution = 12575 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . stage-out = 1 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,723 | INFO     | . log creation = 0 s
[2025-07-25 03:40:40] 2025-07-25 01:40:04,724 | INFO     | ..............................
[2025-07-25 03:40:40] 2025-07-25 01:40:05,225 | INFO     | 
[2025-07-25 03:40:40] 2025-07-25 01:40:05,226 | INFO     | job summary report
[2025-07-25 03:40:40] 2025-07-25 01:40:05,226 | INFO     | --------------------------------------------------
[2025-07-25 03:40:40] 2025-07-25 01:40:05,226 | INFO     | PanDA job id: 6741801354
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | task id: 45697532
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | errors: (none)
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | pilot state: finished 
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | transexitcode: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | exeerrorcode: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | exeerrordiag: 
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | exitcode: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:05,227 | INFO     | exitmsg: OK
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | cpuconsumptiontime: 48581 s
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | nevents: 400
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | neventsw: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | pid: 19998
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | pgrp: 19998
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | corecount: 4
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | event service: False
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | sizes: {0: 2397384, 1: 2397583, 7: 2397845, 12: 2397873, 12588: 2428030, 12590: 2437050, 12592: 2437234, 12599: 2437456}
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | --------------------------------------------------
[2025-07-25 03:40:40] 2025-07-25 01:40:05,228 | INFO     | 
[2025-07-25 03:40:40] 2025-07-25 01:40:05,229 | INFO     | executing command: ls -lF /scratch/boinc/var/slot68/slots/0
[2025-07-25 03:40:40] 2025-07-25 01:40:05,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-25 03:40:40] 2025-07-25 01:40:05,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-25 03:40:40] 2025-07-25 01:40:05,264 | INFO     | job 6741801354 has completed (purged errors)
[2025-07-25 03:40:40] 2025-07-25 01:40:05,264 | INFO     | overall cleanup function is called
[2025-07-25 03:40:40] 2025-07-25 01:40:06,052 | INFO     | number of running child processes to parent process 19998: 1
[2025-07-25 03:40:40] 2025-07-25 01:40:06,053 | INFO     | maximum number of monitored processes: 6
[2025-07-25 03:40:40] 2025-07-25 01:40:06,053 | INFO     | aborting job monitoring since job object (job id=6741801354) has expired
[2025-07-25 03:40:40] 2025-07-25 01:40:06,279 | INFO     | --- collectZombieJob: --- 10, [19998]
[2025-07-25 03:40:40] 2025-07-25 01:40:06,279 | INFO     | zombie collector waiting for pid 19998
[2025-07-25 03:40:40] 2025-07-25 01:40:06,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-25 03:40:40] 2025-07-25 01:40:06,279 | INFO     | collected zombie processes
[2025-07-25 03:40:40] 2025-07-25 01:40:06,279 | INFO     | will attempt to kill all subprocesses of pid=19998
[2025-07-25 03:40:40] 2025-07-25 01:40:06,900 | INFO     | PID=12002 has CPU usage=24.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-25 03:40:40] 2025-07-25 01:40:06,900 | INFO     | .. there are 24 such processes running
[2025-07-25 03:40:40] 2025-07-25 01:40:07,332 | INFO     | process IDs to be killed: [19998] (in reverse order)
[2025-07-25 03:40:40] 2025-07-25 01:40:07,603 | WARNING  | found no corresponding commands to process id(s)
[2025-07-25 03:40:40] 2025-07-25 01:40:07,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-25 03:40:40] 2025-07-25 01:40:07,627 | INFO     | did not find any defunct processes belonging to 19998
[2025-07-25 03:40:40] 2025-07-25 01:40:07,645 | INFO     | did not find any defunct processes belonging to 19998
[2025-07-25 03:40:40] 2025-07-25 01:40:07,646 | INFO     | ready for new job
[2025-07-25 03:40:40] 2025-07-25 01:40:07,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-25 03:40:40] 2025-07-25 01:40:07,648 | INFO     | ***************************************
[2025-07-25 03:40:40] 2025-07-25 01:40:07,648 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-25 03:40:40] 2025-07-25 01:40:07,648 | INFO     | ***************************************
[2025-07-25 03:40:40] 2025-07-25 01:40:07,648 | INFO     | 
[2025-07-25 03:40:40] 2025-07-25 01:40:07,657 | INFO     | architecture information:
[2025-07-25 03:40:40] 2025-07-25 01:40:07,657 | INFO     | executing command: cat /etc/os-release
[2025-07-25 03:40:40] 2025-07-25 01:40:07,680 | INFO     | cat /etc/os-release:
[2025-07-25 03:40:40] NAME="CentOS Linux"
[2025-07-25 03:40:40] VERSION="7 (Core)"
[2025-07-25 03:40:40] ID="centos"
[2025-07-25 03:40:40] ID_LIKE="rhel fedora"
[2025-07-25 03:40:40] VERSION_ID="7"
[2025-07-25 03:40:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-25 03:40:40] ANSI_COLOR="0;31"
[2025-07-25 03:40:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-25 03:40:40] HOME_URL="https://www.centos.org/"
[2025-07-25 03:40:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-25 03:40:40] 
[2025-07-25 03:40:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-25 03:40:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-25 03:40:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-25 03:40:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-25 03:40:40] 
[2025-07-25 03:40:40] 2025-07-25 01:40:07,681 | INFO     | ***************************************
[2025-07-25 03:40:40] 2025-07-25 01:40:08,183 | INFO     | executing command: df -mP /scratch/boinc/var/slot68/slots/0
[2025-07-25 03:40:40] 2025-07-25 01:40:08,210 | INFO     | sufficient remaining disk space (3274454335488 B)
[2025-07-25 03:40:40] 2025-07-25 01:40:08,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-25 03:40:40] 2025-07-25 01:40:08,210 | INFO     | current server update state: UPDATING_FINAL
[2025-07-25 03:40:40] 2025-07-25 01:40:08,210 | INFO     | update_server=False
[2025-07-25 03:40:40] 2025-07-25 01:40:08,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-25 03:40:40] 2025-07-25 01:40:08,407 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-25 03:40:40] 2025-07-25 01:40:08,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-25 03:40:40] 2025-07-25 01:40:08,556 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-25 03:40:40] 2025-07-25 01:40:08,557 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-25 03:40:40] 2025-07-25 01:40:08,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-25 03:40:40] 2025-07-25 01:40:08,557 | INFO     | will abort loop
[2025-07-25 03:40:40] 2025-07-25 01:40:08,579 | INFO     | all job control threads have been joined
[2025-07-25 03:40:40] 2025-07-25 01:40:09,057 | INFO     | all data control threads have been joined
[2025-07-25 03:40:40] 2025-07-25 01:40:09,213 | INFO     | [job] retrieve thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,257 | INFO     | all payload control threads have been joined
[2025-07-25 03:40:40] 2025-07-25 01:40:09,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,520 | INFO     | [job] create_data_payload thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,563 | INFO     | [job] job monitor thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,569 | INFO     | [payload] failed_post thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,573 | INFO     | [payload] validate_post thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,585 | INFO     | [job] control thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,733 | INFO     | [job] validate thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,785 | INFO     | [payload] execute_payloads thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,836 | INFO     | [data] copytool_in thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:09,840 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-25 03:40:40] 2025-07-25 01:40:10,062 | INFO     | [data] control thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:10,072 | INFO     | [payload] validate_pre thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:10,262 | INFO     | [payload] control thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:10,429 | INFO     | [data] copytool_out thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:10,845 | INFO     | [job] queue monitor thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:12,413 | INFO     | [data] queue_monitor thread has finished
[2025-07-25 03:40:40] 2025-07-25 01:40:14,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23306479716160)>', '<ExcThread(monitor, started 23305765512960)>']
[2025-07-25 03:40:40] 2025-07-25 01:40:19,319 | INFO     | all workflow threads have been joined
[2025-07-25 03:40:40] 2025-07-25 01:40:19,320 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-25 03:40:40] 2025-07-25 01:40:19,320 | INFO     | traces error code: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:19,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-25 03:40:40] 2025-07-25 01:40:37,962 | INFO     | 12621s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | INFO     | PID=12002 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | INFO     | .. there are 24 such processes running
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | INFO     | found 0 job(s) in 20 queues
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-25 03:40:40] 2025-07-25 01:40:39,732 | INFO     | [monitor] control thread has ended
[2025-07-25 03:40:40] 2025-07-25 01:40:39,896 [wrapper] ==== pilot stdout END ====
[2025-07-25 03:40:40] 2025-07-25 01:40:39,901 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-25 03:40:40] 2025-07-25 01:40:39,904 [wrapper] pilotpid: 12002
[2025-07-25 03:40:40] 2025-07-25 01:40:39,910 [wrapper] Pilot exit status: 0
[2025-07-25 03:40:40] 2025-07-25 01:40:39,925 [wrapper] pandaids: 6741801354 6741801354
[2025-07-25 03:40:40] 2025-07-25 01:40:40,069 [wrapper] cleanup supervisor_pilot 1273395 12003
[2025-07-25 03:40:40] 2025-07-25 01:40:40,074 [wrapper] Test setup, not cleaning
[2025-07-25 03:40:40] 2025-07-25 01:40:40,077 [wrapper] apfmon messages muted
[2025-07-25 03:40:40] 2025-07-25 01:40:40,083 [wrapper] ==== wrapper stdout END ====
[2025-07-25 03:40:40] 2025-07-25 01:40:40,087 [wrapper] ==== wrapper stderr END ====
[2025-07-25 03:40:40]  *** Error codes and diagnostics ***
[2025-07-25 03:40:40]     "exeErrorCode": 0,
[2025-07-25 03:40:40]     "exeErrorDiag": "",
[2025-07-25 03:40:40]     "pilotErrorCode": 0,
[2025-07-25 03:40:40]     "pilotErrorDiag": "",
[2025-07-25 03:40:40]  *** Listing of results directory ***
[2025-07-25 03:40:40] total 935612
[2025-07-25 03:40:40] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc    530466 Jul 22 01:18 pilot3.tar.gz
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc      5112 Jul 22 01:42 queuedata.json
[2025-07-25 03:40:40] -rwx------ 1 boinc boinc     36292 Jul 22 01:43 runpilot2-wrapper.sh
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc       100 Jul 24 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-25 03:40:40] -rwxr-xr-x 1 boinc boinc      7986 Jul 24 20:47 run_atlas
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc       105 Jul 24 20:47 job.xml
[2025-07-25 03:40:40] -rw-r--r-- 3 boinc boinc 333911985 Jul 24 20:48 EVNT.45697530._000126.pool.root.1
[2025-07-25 03:40:40] -rw-r--r-- 3 boinc boinc 333911985 Jul 24 20:48 ATLAS.root_0
[2025-07-25 03:40:40] -rw-r--r-- 2 boinc boinc     15095 Jul 24 20:48 start_atlas.sh
[2025-07-25 03:40:40] drwxrwx--x 2 boinc boinc      4096 Jul 24 20:48 shared
[2025-07-25 03:40:40] -rw-r--r-- 2 boinc boinc    542903 Jul 24 20:48 input.tar.gz
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc         0 Jul 24 20:48 boinc_lockfile
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc      2611 Jul 25 00:09 pandaJob.out
[2025-07-25 03:40:40] -rw------- 1 boinc boinc    979701 Jul 25 00:09 agis_schedconf.cvmfs.json
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc      6694 Jul 25 02:50 init_data.xml
[2025-07-25 03:40:40] -rw------- 1 boinc boinc 283369378 Jul 25 03:39 HITS.45697532._003143.pool.root.1
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc       532 Jul 25 03:39 boinc_task_state.xml
[2025-07-25 03:40:40] -rw------- 1 boinc boinc      1045 Jul 25 03:39 memory_monitor_summary.json
[2025-07-25 03:40:40] -rw------- 1 boinc boinc   1593052 Jul 25 03:39 agis_ddmendpoints.agis.ALL.json
[2025-07-25 03:40:40] -rw------- 1 boinc boinc    331704 Jul 25 03:39 log.45697532._003143.job.log.tgz.1
[2025-07-25 03:40:40] -rw------- 1 boinc boinc        97 Jul 25 03:40 pilot_heartbeat.json
[2025-07-25 03:40:40] -rw------- 1 boinc boinc      7781 Jul 25 03:40 heartbeat.json
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc      8192 Jul 25 03:40 boinc_mmap_file
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc        28 Jul 25 03:40 wrapper_checkpoint.txt
[2025-07-25 03:40:40] -rw------- 1 boinc boinc       937 Jul 25 03:40 pilotlog.txt
[2025-07-25 03:40:40] -rw------- 1 boinc boinc   1163618 Jul 25 03:40 log.45697532._003143.job.log.1
[2025-07-25 03:40:40] -rw------- 1 boinc boinc       357 Jul 25 03:40 output.list
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc       620 Jul 25 03:40 runtime_log
[2025-07-25 03:40:40] -rw------- 1 boinc boinc   1515520 Jul 25 03:40 result.tar.gz
[2025-07-25 03:40:40] -rw------- 1 boinc boinc       790 Jul 25 03:40 sWGLDmPLFy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQqtKDm3C1yQn.diag
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc      9104 Jul 25 03:40 runtime_log.err
[2025-07-25 03:40:40] -rw-r--r-- 1 boinc boinc     22853 Jul 25 03:40 stderr.txt
[2025-07-25 03:40:40] HITS file was successfully produced:
[2025-07-25 03:40:40] -rw------- 1 boinc boinc 283369378 Jul 25 03:39 shared/HITS.pool.root.1
[2025-07-25 03:40:40]  *** Contents of shared directory: ***
[2025-07-25 03:40:40] total 604852
[2025-07-25 03:40:40] -rw-r--r-- 3 boinc boinc 333911985 Jul 24 20:48 ATLAS.root_0
[2025-07-25 03:40:40] -rw-r--r-- 2 boinc boinc     15095 Jul 24 20:48 start_atlas.sh
[2025-07-25 03:40:40] -rw-r--r-- 2 boinc boinc    542903 Jul 24 20:48 input.tar.gz
[2025-07-25 03:40:40] -rw------- 1 boinc boinc 283369378 Jul 25 03:39 HITS.pool.root.1
[2025-07-25 03:40:40] -rw------- 1 boinc boinc   1515520 Jul 25 03:40 result.tar.gz
03:40:41 (7931): run_atlas exited; CPU time 49239.776134
03:40:41 (7931): called boinc_finish(0)

</stderr_txt>
]]>

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