Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:26:33 (2079284): wrapper (7.7.26015): starting
15:26:33 (2079284): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 15:26:33] Arguments: --nthreads 8
[2025-07-21 15:26:33] Threads: 8
[2025-07-21 15:26:33] Checking for CVMFS
[2025-07-21 15:26:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 15:26:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 15:26:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 15:26:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 15:26:34] 2.11.3.0 231875 470870 206544 148600 1 183 36038107 45568001 16635 130560 0 2539266766 99.771 1884379966 19030 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-07-21 15:26:34] CVMFS is ok
[2025-07-21 15:26:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 15:26:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 15:26:34] Further information can be found at the LHC@home message board.
[2025-07-21 15:26:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 15:26:34] Checking for apptainer binary...
[2025-07-21 15:26:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 15:26:34] Running /usr/bin/apptainer --version
[2025-07-21 15:26:36] apptainer version 1.3.3-1.el9
[2025-07-21 15:26:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 15:26:37] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0019.triumf.lcg
[2025-07-21 15:26:37] apptainer works
[2025-07-21 15:26:37] Set ATHENA_PROC_NUMBER=8
[2025-07-21 15:26:37] Set ATHENA_CORE_NUMBER=8
[2025-07-21 15:26:38] Starting ATLAS job with PandaID=6741692083
[2025-07-21 15:26:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 15:32:08]  *** The last 200 lines of the pilot log: ***
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | WARNING  | wrong length of table data, x=[1753136913.0], y=[2199.0] (must be same and length>=4)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | . Timing measurements:
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . get job = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . initial setup = 5 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload setup = 21 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-in = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload execution = 53 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-out = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . log creation = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741692083/pilotlog.txt
[2025-07-21 15:32:08] 2025-07-21 22:31:32,001 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-07-21 15:32:08] - Log from pilotlog.txt -
[2025-07-21 15:32:08] 2025-07-21 22:31:31,968 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741692083/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | INFO     | extracted standard info from prmon json
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | WARNING  | wrong length of table data, x=[1753136913.0], y=[2199.0] (must be same and length>=4)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | . Timing measurements:
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . get job = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . initial setup = 5 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload setup = 21 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-in = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload execution = 53 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-out = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . log creation = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741692083/pilotlog.txt
[2025-07-21 15:32:08] 2025-07-21 22:31:32,001 | WARNING  | 
[2025-07-21 15:32:08] [begin log extracts]
[2025-07-21 15:32:08] - Log from pilotlog.txt -
[2025-07-21 15:32:08] 2025-07-21 22:31:31,968 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6741692083/memory_monitor_summary.json (trf name=prmon)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | INFO     | extracted standard info from prmon json
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | INFO     | extracted standard memory fields from prmon json
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-21 15:32:08] 2025-07-21 22:31:31,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | WARNING  | wrong length of table data, x=[1753136913.0], y=[2199.0] (must be same and length>=4)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,983 | INFO     | . Timing measurements:
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . get job = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . initial setup = 5 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload setup = 21 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-in = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . payload execution = 53 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . stage-out = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | . log creation = 0 s
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | ..............................
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-07-21 15:32:08] 2025-07-21 22:31:31,984 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6741692083/pilotlog.txt
[2025-07-21 15:32:08] [end log extracts]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,001 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-07-21 15:32:08] 2025-07-21 22:31:32,002 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-07-21 15:32:08] 2025-07-21 22:31:32,205 | INFO     | 
[2025-07-21 15:32:08] 2025-07-21 22:31:32,205 | INFO     | job summary report
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | --------------------------------------------------
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | PanDA job id: 6741692083
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | task id: 45697532
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-07-21 15:29:11,590 CRITICAL Transform executor raised TransformValidationExceptio
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | pilot state: failed 
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | transexitcode: 65
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | exeerrorcode: 65
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | exitcode: 65
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-07-21 15:32:08] 2025-07-21 22:31:32,206 | INFO     | cpuconsumptiontime: 17 s
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | nevents: 0
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | neventsw: 0
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | pid: 2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | pgrp: 2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | corecount: 8
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | event service: False
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | sizes: {0: 2397315, 1: 2397570, 12: 2397570, 14: 2397860, 23: 2397888, 78: 2421203, 79: 2421307, 81: 2425683, 211: 2425821}
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | --------------------------------------------------
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | 
[2025-07-21 15:32:08] 2025-07-21 22:31:32,207 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,366 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,367 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 15:32:08] 2025-07-21 22:31:32,368 | INFO     | job 6741692083 has completed (purged errors)
[2025-07-21 15:32:08] 2025-07-21 22:31:32,368 | INFO     | overall cleanup function is called
[2025-07-21 15:32:08] 2025-07-21 22:31:33,402 | INFO     | --- collectZombieJob: --- 10, [2089558]
[2025-07-21 15:32:08] 2025-07-21 22:31:33,402 | INFO     | zombie collector waiting for pid 2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:33,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 15:32:08] 2025-07-21 22:31:33,403 | INFO     | collected zombie processes
[2025-07-21 15:32:08] 2025-07-21 22:31:33,403 | INFO     | will attempt to kill all subprocesses of pid=2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:34,840 | INFO     | PID=2083206 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 15:32:08] 2025-07-21 22:31:34,840 | INFO     | .. there are 33 such processes running
[2025-07-21 15:32:08] 2025-07-21 22:31:34,864 | INFO     | process IDs to be killed: [2089558] (in reverse order)
[2025-07-21 15:32:08] 2025-07-21 22:31:35,306 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 15:32:08] 2025-07-21 22:31:35,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 15:32:08] 2025-07-21 22:31:35,316 | INFO     | did not find any defunct processes belonging to 2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:35,325 | INFO     | did not find any defunct processes belonging to 2089558
[2025-07-21 15:32:08] 2025-07-21 22:31:35,326 | INFO     | ready for new job
[2025-07-21 15:32:08] 2025-07-21 22:31:35,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 15:32:08] 2025-07-21 22:31:35,328 | INFO     | ***************************************
[2025-07-21 15:32:08] 2025-07-21 22:31:35,328 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 15:32:08] 2025-07-21 22:31:35,328 | INFO     | ***************************************
[2025-07-21 15:32:08] 2025-07-21 22:31:35,328 | INFO     | 
[2025-07-21 15:32:08] 2025-07-21 22:31:35,342 | INFO     | architecture information:
[2025-07-21 15:32:08] 2025-07-21 22:31:35,342 | INFO     | executing command: cat /etc/os-release
[2025-07-21 15:32:08] 2025-07-21 22:31:35,481 | INFO     | cat /etc/os-release:
[2025-07-21 15:32:08] NAME="CentOS Linux"
[2025-07-21 15:32:08] VERSION="7 (Core)"
[2025-07-21 15:32:08] ID="centos"
[2025-07-21 15:32:08] ID_LIKE="rhel fedora"
[2025-07-21 15:32:08] VERSION_ID="7"
[2025-07-21 15:32:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 15:32:08] ANSI_COLOR="0;31"
[2025-07-21 15:32:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 15:32:08] HOME_URL="https://www.centos.org/"
[2025-07-21 15:32:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 15:32:08] 
[2025-07-21 15:32:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 15:32:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 15:32:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 15:32:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 15:32:08] 
[2025-07-21 15:32:08] 2025-07-21 22:31:35,481 | INFO     | ***************************************
[2025-07-21 15:32:08] 2025-07-21 22:31:35,984 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-07-21 15:32:08] 2025-07-21 22:31:36,079 | INFO     | sufficient remaining disk space (1075011649536 B)
[2025-07-21 15:32:08] 2025-07-21 22:31:36,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 15:32:08] 2025-07-21 22:31:36,080 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 15:32:08] 2025-07-21 22:31:36,080 | INFO     | update_server=False
[2025-07-21 15:32:08] 2025-07-21 22:31:36,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 15:32:08] 2025-07-21 22:31:36,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 15:32:08] 2025-07-21 22:31:36,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 15:32:08] 2025-07-21 22:31:36,381 | INFO     | aborting loop
[2025-07-21 15:32:08] 2025-07-21 22:31:36,665 | INFO     | all data control threads have been joined
[2025-07-21 15:32:08] 2025-07-21 22:31:37,013 | INFO     | all payload control threads have been joined
[2025-07-21 15:32:08] 2025-07-21 22:31:37,086 | INFO     | [job] retrieve thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,114 | INFO     | all job control threads have been joined
[2025-07-21 15:32:08] 2025-07-21 22:31:37,241 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 15:32:08] 2025-07-21 22:31:37,297 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,387 | INFO     | [job] job monitor thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,476 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,548 | INFO     | [payload] failed_post thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,552 | INFO     | [payload] validate_post thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:37,671 | INFO     | [data] control thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,000 | INFO     | [job] validate thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,019 | INFO     | [payload] control thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,088 | INFO     | [data] copytool_out thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,120 | INFO     | [job] control thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,239 | INFO     | [data] copytool_in thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,265 | INFO     | [job] queue monitor thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:38,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:39,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 15:32:08] 2025-07-21 22:31:43,048 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 15:32:08] 2025-07-21 22:31:44,752 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723607344960)>', '<ExcThread(monitor, started 139722911368960)>']
[2025-07-21 15:32:08] 2025-07-21 22:31:49,777 | INFO     | all workflow threads have been joined
[2025-07-21 15:32:08] 2025-07-21 22:31:49,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 15:32:08] 2025-07-21 22:31:49,778 | INFO     | traces error code: 0
[2025-07-21 15:32:08] 2025-07-21 22:31:49,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 15:32:08] 2025-07-21 22:32:05,912 | INFO     | 259s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-21 15:32:08] 2025-07-21 22:32:08,356 | INFO     | PID=2083206 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-21 15:32:08] 2025-07-21 22:32:08,356 | INFO     | .. there are 33 such processes running
[2025-07-21 15:32:08] 2025-07-21 22:32:08,357 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 15:32:08] 2025-07-21 22:32:08,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 15:32:08] 2025-07-21 22:32:08,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 15:32:08] 2025-07-21 22:32:08,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 15:32:08] 2025-07-21 22:32:08,357 | INFO     | [monitor] control thread has ended
[2025-07-21 15:32:08] 2025-07-21 22:32:08,668 [wrapper] ==== pilot stdout END ====
[2025-07-21 15:32:08] 2025-07-21 22:32:08,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 15:32:08] 2025-07-21 22:32:08,673 [wrapper] pilotpid: 2083206
[2025-07-21 15:32:08] 2025-07-21 22:32:08,674 [wrapper] Pilot exit status: 0
[2025-07-21 15:32:08] 2025-07-21 22:32:08,687 [wrapper] pandaids: 6741692083
[2025-07-21 15:32:08] 2025-07-21 22:32:08,735 [wrapper] cleanup supervisor_pilot 2083212 2083207
[2025-07-21 15:32:08] 2025-07-21 22:32:08,737 [wrapper] Test setup, not cleaning
[2025-07-21 15:32:08] 2025-07-21 22:32:08,739 [wrapper] apfmon messages muted
[2025-07-21 15:32:08] 2025-07-21 22:32:08,742 [wrapper] ==== wrapper stdout END ====
[2025-07-21 15:32:08] 2025-07-21 22:32:08,745 [wrapper] ==== wrapper stderr END ====
[2025-07-21 15:32:08]  *** Error codes and diagnostics ***
[2025-07-21 15:32:08]     "exeErrorCode": 65,
[2025-07-21 15:32:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 15:32:08]     "pilotErrorCode": 1305,
[2025-07-21 15:32:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-07-21 15:32:08]  *** Listing of results directory ***
[2025-07-21 15:32:08] total 325936
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc    530466 Jul 21 14:11 pilot3.tar.gz
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc      5112 Jul 21 14:16 queuedata.json
[2025-07-21 15:32:08] -rwx------. 1 boinc boinc     36292 Jul 21 14:16 runpilot2-wrapper.sh
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc       100 Jul 21 15:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 15:32:08] -rwxr-xr-x. 1 boinc boinc      7986 Jul 21 15:26 run_atlas
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc       105 Jul 21 15:26 job.xml
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc      6449 Jul 21 15:26 init_data.xml
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc 329679698 Jul 21 15:26 EVNT.45697530._000041.pool.root.1
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc     15095 Jul 21 15:26 start_atlas.sh
[2025-07-21 15:32:08] drwxrwx--x. 2 boinc boinc      4096 Jul 21 15:26 shared
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc    542903 Jul 21 15:26 input.tar.gz
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc         0 Jul 21 15:26 boinc_lockfile
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc      2612 Jul 21 15:26 pandaJob.out
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc    977342 Jul 21 15:27 agis_schedconf.cvmfs.json
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc   1593055 Jul 21 15:27 agis_ddmendpoints.agis.ALL.json
[2025-07-21 15:32:08] drwx------. 4 boinc boinc      4096 Jul 21 15:27 pilot3
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc       525 Jul 21 15:29 boinc_task_state.xml
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc       944 Jul 21 15:29 memory_monitor_summary.json
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc     21561 Jul 21 15:29 log.45697532._001004.job.log.tgz.1
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc        95 Jul 21 15:31 pilot_heartbeat.json
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc      8401 Jul 21 15:31 heartbeat.json
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc      8192 Jul 21 15:32 boinc_mmap_file
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc        23 Jul 21 15:32 wrapper_checkpoint.txt
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc       937 Jul 21 15:32 pilotlog.txt
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc     80692 Jul 21 15:32 log.45697532._001004.job.log.1
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc       188 Jul 21 15:32 output.list
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc       620 Jul 21 15:32 runtime_log
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc    122880 Jul 21 15:32 result.tar.gz
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc      8648 Jul 21 15:32 runtime_log.err
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc       647 Jul 21 15:32 EPVLDmz2Cy7n9Rq4apOajLDm4fhM0noT9bVof3QYDmuRtKDmFNB9Xm.diag
[2025-07-21 15:32:08] -rw-r--r--. 1 boinc boinc     21674 Jul 21 15:32 stderr.txt
[2025-07-21 15:32:08] No HITS result produced
[2025-07-21 15:32:08]  *** Contents of shared directory: ***
[2025-07-21 15:32:08] total 322628
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc 329679698 Jul 21 15:26 ATLAS.root_0
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc     15095 Jul 21 15:26 start_atlas.sh
[2025-07-21 15:32:08] -rw-r--r--. 2 boinc boinc    542903 Jul 21 15:26 input.tar.gz
[2025-07-21 15:32:08] -rw-------. 1 boinc boinc    122880 Jul 21 15:32 result.tar.gz
15:32:10 (2079284): run_atlas exited; CPU time 28.121711
15:32:10 (2079284): called boinc_finish(0)

</stderr_txt>
]]>

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