Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:30:23 (3201988): wrapper (7.7.26015): starting
16:30:23 (3201988): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 16:30:23] Arguments: --nthreads 8
[2025-07-21 16:30:23] Threads: 8
[2025-07-21 16:30:23] Checking for CVMFS
[2025-07-21 16:30:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 16:30:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 16:30:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 16:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 16:30:25] 2.12.6.0 3531214 10197 164496 148596 1 14 22493838 32935936 18829 16776704 0 6914299 99.817 5609188 9302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-21 16:30:25] CVMFS is ok
[2025-07-21 16:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 16:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 16:30:25] Further information can be found at the LHC@home message board.
[2025-07-21 16:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 16:30:25] Checking for apptainer binary...
[2025-07-21 16:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 16:30:25] Running /usr/bin/apptainer --version
[2025-07-21 16:30:25] apptainer version 1.4.1-1.el9
[2025-07-21 16:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 16:30:26] c6-12-25-2.aglt2.org
[2025-07-21 16:30:26] apptainer works
[2025-07-21 16:30:26] Set ATHENA_PROC_NUMBER=8
[2025-07-21 16:30:26] Set ATHENA_CORE_NUMBER=8
[2025-07-21 16:30:26] Starting ATLAS job with PandaID=6741675319
[2025-07-21 16:30:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 05:35:15]  *** The last 200 lines of the pilot log: ***
[2025-07-22 05:35:15] 2025-07-22 09:34:34,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-22 05:35:15] 2025-07-22 09:34:34,760 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9995416666667
[2025-07-22 05:35:15] 2025-07-22 09:34:34,808 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741675319/memory_monitor_summary.json (trf name=prmon)
[2025-07-22 05:35:15] 2025-07-22 09:34:34,810 | INFO     | extracted standard info from prmon json
[2025-07-22 05:35:15] 2025-07-22 09:34:34,810 | INFO     | extracted standard memory fields from prmon json
[2025-07-22 05:35:15] 2025-07-22 09:34:34,811 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-22 05:35:15] 2025-07-22 09:34:34,812 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-22 05:35:15] 2025-07-22 09:34:34,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-22 05:35:15] 2025-07-22 09:34:34,845 | INFO     | fitting pss+swap vs Time
[2025-07-22 05:35:15] 2025-07-22 09:34:34,848 | INFO     | sum of square deviations: 140464855734.99475
[2025-07-22 05:35:15] 2025-07-22 09:34:34,884 | INFO     | sum of deviations: 543557477962.89795
[2025-07-22 05:35:15] 2025-07-22 09:34:34,885 | INFO     | mean x: 1753153427.2473958
[2025-07-22 05:35:15] 2025-07-22 09:34:34,885 | INFO     | mean y: 2149255.07421875
[2025-07-22 05:35:15] 2025-07-22 09:34:34,886 | INFO     | -- intersect: -6782036372.0726185
[2025-07-22 05:35:15] 2025-07-22 09:34:34,886 | INFO     | intersect: -6782036372.0726185
[2025-07-22 05:35:15] 2025-07-22 09:34:34,889 | INFO     | chi2: 5.923186412748775
[2025-07-22 05:35:15] 2025-07-22 09:34:34,891 | INFO     | sum of square deviations: 137739342183.18726
[2025-07-22 05:35:15] 2025-07-22 09:34:34,925 | INFO     | sum of deviations: 631339118267.7322
[2025-07-22 05:35:15] 2025-07-22 09:34:34,926 | INFO     | mean x: 1753153274.7496724
[2025-07-22 05:35:15] 2025-07-22 09:34:34,926 | INFO     | mean y: 2154149.9252948887
[2025-07-22 05:35:15] 2025-07-22 09:34:34,926 | INFO     | -- intersect: -8033561899.86246
[2025-07-22 05:35:15] 2025-07-22 09:34:34,927 | INFO     | intersect: -8033561899.86246
[2025-07-22 05:35:15] 2025-07-22 09:34:34,929 | INFO     | chi2: 4.57192096128631
[2025-07-22 05:35:15] 2025-07-22 09:34:34,930 | INFO     | current chi2=4.57192096128631 (change=22.813150849922064 %)
[2025-07-22 05:35:15] 2025-07-22 09:34:34,930 | INFO     | right removable region: 762
[2025-07-22 05:35:15] 2025-07-22 09:34:34,933 | INFO     | sum of square deviations: 137739085372.18347
[2025-07-22 05:35:15] 2025-07-22 09:34:34,966 | INFO     | sum of deviations: 360614785922.8804
[2025-07-22 05:35:15] 2025-07-22 09:34:34,966 | INFO     | mean x: 1753153579.7522936
[2025-07-22 05:35:15] 2025-07-22 09:34:34,967 | INFO     | mean y: 2159483.0681520314
[2025-07-22 05:35:15] 2025-07-22 09:34:34,967 | INFO     | -- intersect: -4587773005.186781
[2025-07-22 05:35:15] 2025-07-22 09:34:34,967 | INFO     | intersect: -4587773005.186781
[2025-07-22 05:35:15] 2025-07-22 09:34:34,971 | INFO     | chi2: 3.153470970201432
[2025-07-22 05:35:15] 2025-07-22 09:34:34,972 | INFO     | current chi2=3.153470970201432 (change=46.760565167862076 %)
[2025-07-22 05:35:15] 2025-07-22 09:34:34,977 | INFO     | sum of square deviations: 135048804046.83513
[2025-07-22 05:35:15] 2025-07-22 09:34:35,058 | INFO     | sum of deviations: 261720758409.6267
[2025-07-22 05:35:15] 2025-07-22 09:34:35,059 | INFO     | mean x: 1753153732.257256
[2025-07-22 05:35:15] 2025-07-22 09:34:35,060 | INFO     | mean y: 2165087.0224274406
[2025-07-22 05:35:15] 2025-07-22 09:34:35,060 | INFO     | -- intersect: -3395397206.5015597
[2025-07-22 05:35:15] 2025-07-22 09:34:35,060 | INFO     | intersect: -3395397206.5015597
[2025-07-22 05:35:15] 2025-07-22 09:34:35,082 | INFO     | chi2: 2.406582902675454
[2025-07-22 05:35:15] 2025-07-22 09:34:35,083 | INFO     | current chi2=2.406582902675454 (change=23.684634315129575 %)
[2025-07-22 05:35:15] 2025-07-22 09:34:35,083 | INFO     | left removable region: 20
[2025-07-22 05:35:15] 2025-07-22 09:34:35,109 | INFO     | sum of square deviations: 126676103494.69672
[2025-07-22 05:35:15] 2025-07-22 09:34:35,141 | INFO     | sum of deviations: 236151843549.45984
[2025-07-22 05:35:15] 2025-07-22 09:34:35,141 | INFO     | mean x: 1753153854.2654986
[2025-07-22 05:35:15] 2025-07-22 09:34:35,142 | INFO     | mean y: 2177102.068733154
[2025-07-22 05:35:15] 2025-07-22 09:34:35,142 | INFO     | -- intersect: -3266083471.860043
[2025-07-22 05:35:15] 2025-07-22 09:34:35,142 | INFO     | intersect: -3266083471.860043
[2025-07-22 05:35:15] 2025-07-22 09:34:35,145 | INFO     | chi2: 0.5196623251467011
[2025-07-22 05:35:15] 2025-07-22 09:34:35,146 | INFO     | -- intersect: -3266083471.860043
[2025-07-22 05:35:15] 2025-07-22 09:34:35,146 | INFO     | current memory leak: 1.86 B/s (using 742 data points, chi2=0.52)
[2025-07-22 05:35:15] 2025-07-22 09:34:35,149 | INFO     | could have reported an average CPU frequency of 1003 MHz (29 samples)
[2025-07-22 05:35:15] 2025-07-22 09:34:35,150 | INFO     | ..............................
[2025-07-22 05:35:15] 2025-07-22 09:34:35,150 | INFO     | . Timing measurements:
[2025-07-22 05:35:15] 2025-07-22 09:34:35,150 | INFO     | . get job = 0 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,151 | INFO     | . initial setup = 6 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,151 | INFO     | . payload setup = 44 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,151 | INFO     | . stage-in = 0 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,151 | INFO     | . payload execution = 46824 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,151 | INFO     | . stage-out = 7 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,152 | INFO     | . log creation = 1 s
[2025-07-22 05:35:15] 2025-07-22 09:34:35,152 | INFO     | ..............................
[2025-07-22 05:35:15] 2025-07-22 09:34:37,305 | INFO     | 
[2025-07-22 05:35:15] 2025-07-22 09:34:37,306 | INFO     | job summary report
[2025-07-22 05:35:15] 2025-07-22 09:34:37,306 | INFO     | --------------------------------------------------
[2025-07-22 05:35:15] 2025-07-22 09:34:37,307 | INFO     | PanDA job id: 6741675319
[2025-07-22 05:35:15] 2025-07-22 09:34:37,307 | INFO     | task id: 45697523
[2025-07-22 05:35:15] 2025-07-22 09:34:37,307 | INFO     | errors: (none)
[2025-07-22 05:35:15] 2025-07-22 09:34:37,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 05:35:15] 2025-07-22 09:34:37,308 | INFO     | pilot state: finished 
[2025-07-22 05:35:15] 2025-07-22 09:34:37,308 | INFO     | transexitcode: 0
[2025-07-22 05:35:15] 2025-07-22 09:34:37,308 | INFO     | exeerrorcode: 0
[2025-07-22 05:35:15] 2025-07-22 09:34:37,308 | INFO     | exeerrordiag: 
[2025-07-22 05:35:15] 2025-07-22 09:34:37,308 | INFO     | exitcode: 0
[2025-07-22 05:35:15] 2025-07-22 09:34:37,330 | INFO     | exitmsg: OK
[2025-07-22 05:35:15] 2025-07-22 09:34:37,370 | INFO     | cpuconsumptiontime: 166059 s
[2025-07-22 05:35:15] 2025-07-22 09:34:37,370 | INFO     | nevents: 400
[2025-07-22 05:35:15] 2025-07-22 09:34:37,371 | INFO     | neventsw: 0
[2025-07-22 05:35:15] 2025-07-22 09:34:37,371 | INFO     | pid: 3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:37,371 | INFO     | pgrp: 3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:37,371 | INFO     | corecount: 8
[2025-07-22 05:35:15] 2025-07-22 09:34:37,371 | INFO     | event service: False
[2025-07-22 05:35:15] 2025-07-22 09:34:37,372 | INFO     | sizes: {0: 2396731, 1: 2397416, 2: 2397615, 3: 2397615, 4: 2397643, 16: 2397671, 27: 2397827, 33: 2398117, 39: 2398173, 46873: 2441669, 46875: 2442272, 46883: 2451
[2025-07-22 05:35:15] 2025-07-22 09:34:37,372 | INFO     | --------------------------------------------------
[2025-07-22 05:35:15] 2025-07-22 09:34:37,372 | INFO     | 
[2025-07-22 05:35:15] 2025-07-22 09:34:37,372 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-22 05:35:15] 2025-07-22 09:34:37,621 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,622 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,622 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,622 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,647 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 05:35:15] 2025-07-22 09:34:37,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 05:35:15] 2025-07-22 09:34:37,648 | INFO     | job 6741675319 has completed (purged errors)
[2025-07-22 05:35:15] 2025-07-22 09:34:37,649 | INFO     | overall cleanup function is called
[2025-07-22 05:35:15] 2025-07-22 09:34:38,672 | INFO     | --- collectZombieJob: --- 10, [3224721]
[2025-07-22 05:35:15] 2025-07-22 09:34:38,672 | INFO     | zombie collector waiting for pid 3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:38,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 05:35:15] 2025-07-22 09:34:38,673 | INFO     | collected zombie processes
[2025-07-22 05:35:15] 2025-07-22 09:34:38,673 | INFO     | will attempt to kill all subprocesses of pid=3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:38,873 | INFO     | PID=3208748 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 05:35:15] 2025-07-22 09:34:38,951 | INFO     | .. there are 14 such processes running
[2025-07-22 05:35:15] 2025-07-22 09:34:40,656 | INFO     | process IDs to be killed: [3224721] (in reverse order)
[2025-07-22 05:35:15] 2025-07-22 09:34:40,946 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 05:35:15] 2025-07-22 09:34:40,947 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 05:35:15] 2025-07-22 09:34:40,978 | INFO     | did not find any defunct processes belonging to 3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:41,062 | INFO     | did not find any defunct processes belonging to 3224721
[2025-07-22 05:35:15] 2025-07-22 09:34:41,063 | INFO     | ready for new job
[2025-07-22 05:35:15] 2025-07-22 09:34:41,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 05:35:15] 2025-07-22 09:34:41,120 | INFO     | ***************************************
[2025-07-22 05:35:15] 2025-07-22 09:34:41,121 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 05:35:15] 2025-07-22 09:34:41,121 | INFO     | ***************************************
[2025-07-22 05:35:15] 2025-07-22 09:34:41,121 | INFO     | 
[2025-07-22 05:35:15] 2025-07-22 09:34:41,229 | INFO     | architecture information:
[2025-07-22 05:35:15] 2025-07-22 09:34:41,244 | INFO     | executing command: cat /etc/os-release
[2025-07-22 05:35:15] 2025-07-22 09:34:41,374 | INFO     | cat /etc/os-release:
[2025-07-22 05:35:15] NAME="CentOS Linux"
[2025-07-22 05:35:15] VERSION="7 (Core)"
[2025-07-22 05:35:15] ID="centos"
[2025-07-22 05:35:15] ID_LIKE="rhel fedora"
[2025-07-22 05:35:15] VERSION_ID="7"
[2025-07-22 05:35:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 05:35:15] ANSI_COLOR="0;31"
[2025-07-22 05:35:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 05:35:15] HOME_URL="https://www.centos.org/"
[2025-07-22 05:35:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 05:35:15] 
[2025-07-22 05:35:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 05:35:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 05:35:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 05:35:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 05:35:15] 
[2025-07-22 05:35:15] 2025-07-22 09:34:41,375 | INFO     | ***************************************
[2025-07-22 05:35:15] 2025-07-22 09:34:41,880 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-22 05:35:15] 2025-07-22 09:34:41,932 | INFO     | sufficient remaining disk space (94446288896 B)
[2025-07-22 05:35:15] 2025-07-22 09:34:41,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 05:35:15] 2025-07-22 09:34:41,933 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 05:35:15] 2025-07-22 09:34:41,934 | INFO     | update_server=False
[2025-07-22 05:35:15] 2025-07-22 09:34:41,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 05:35:15] 2025-07-22 09:34:41,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 05:35:15] 2025-07-22 09:34:42,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 05:35:15] 2025-07-22 09:34:42,316 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-22 05:35:15] 2025-07-22 09:34:42,317 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-22 05:35:15] 2025-07-22 09:34:42,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 05:35:15] 2025-07-22 09:34:42,317 | INFO     | will abort loop
[2025-07-22 05:35:15] 2025-07-22 09:34:42,361 | INFO     | all job control threads have been joined
[2025-07-22 05:35:15] 2025-07-22 09:34:42,603 | INFO     | all data control threads have been joined
[2025-07-22 05:35:15] 2025-07-22 09:34:42,940 | INFO     | [job] retrieve thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:42,995 | INFO     | [job] queue monitor thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,048 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,078 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,085 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,129 | INFO     | [data] copytool_in thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,217 | INFO     | all payload control threads have been joined
[2025-07-22 05:35:15] 2025-07-22 09:34:43,245 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,323 | INFO     | [job] job monitor thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,367 | INFO     | [job] control thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,609 | INFO     | [data] control thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,908 | INFO     | [job] validate thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:43,960 | INFO     | [payload] failed_post thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:44,126 | INFO     | [data] copytool_out thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:44,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 05:35:15] 2025-07-22 09:34:44,223 | INFO     | [payload] control thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:44,521 | INFO     | [payload] validate_post thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:48,241 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 05:35:15] 2025-07-22 09:34:49,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103664371520)>', '<ExcThread(monitor, started 140103024367360)>']
[2025-07-22 05:35:15] 2025-07-22 09:34:54,651 | INFO     | all workflow threads have been joined
[2025-07-22 05:35:15] 2025-07-22 09:34:54,651 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 05:35:15] 2025-07-22 09:34:54,652 | INFO     | traces error code: 0
[2025-07-22 05:35:15] 2025-07-22 09:34:54,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 05:35:15] 2025-07-22 09:35:12,850 | INFO     | PID=3208748 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-22 05:35:15] 2025-07-22 09:35:12,851 | INFO     | .. there are 14 such processes running
[2025-07-22 05:35:15] 2025-07-22 09:35:12,851 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 05:35:15] 2025-07-22 09:35:12,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 05:35:15] 2025-07-22 09:35:12,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 05:35:15] 2025-07-22 09:35:12,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 05:35:15] 2025-07-22 09:35:12,852 | INFO     | [monitor] control thread has ended
[2025-07-22 05:35:15] 2025-07-22 09:35:14,304 [wrapper] ==== pilot stdout END ====
[2025-07-22 05:35:15] 2025-07-22 09:35:14,319 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 05:35:15] 2025-07-22 09:35:14,357 [wrapper] pilotpid: 3208748
[2025-07-22 05:35:15] 2025-07-22 09:35:14,380 [wrapper] Pilot exit status: 0
[2025-07-22 05:35:15] 2025-07-22 09:35:14,467 [wrapper] pandaids: 6741675319
[2025-07-22 05:35:15] 2025-07-22 09:35:14,748 [wrapper] cleanup supervisor_pilot  397586 3208749
[2025-07-22 05:35:15] 2025-07-22 09:35:14,773 [wrapper] Test setup, not cleaning
[2025-07-22 05:35:15] 2025-07-22 09:35:14,797 [wrapper] apfmon messages muted
[2025-07-22 05:35:15] 2025-07-22 09:35:14,821 [wrapper] ==== wrapper stdout END ====
[2025-07-22 05:35:15] 2025-07-22 09:35:14,835 [wrapper] ==== wrapper stderr END ====
[2025-07-22 05:35:15]  *** Error codes and diagnostics ***
[2025-07-22 05:35:15]     "exeErrorCode": 0,
[2025-07-22 05:35:15]     "exeErrorDiag": "",
[2025-07-22 05:35:15]     "pilotErrorCode": 0,
[2025-07-22 05:35:15]     "pilotErrorDiag": "",
[2025-07-22 05:35:15]  *** Listing of results directory ***
[2025-07-22 05:35:15] total 575704
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas    530466 Jul 21 16:13 pilot3.tar.gz
[2025-07-22 05:35:15] -rwx------. 1 boincer umatlas     36292 Jul 21 16:18 runpilot2-wrapper.sh
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas      5112 Jul 21 16:18 queuedata.json
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas       100 Jul 21 16:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 05:35:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 21 16:30 run_atlas
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas       105 Jul 21 16:30 job.xml
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas 317445128 Jul 21 16:30 EVNT.45697521._000018.pool.root.1
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 21 16:30 start_atlas.sh
[2025-07-22 05:35:15] drwxrwx--x. 2 boincer umatlas      4096 Jul 21 16:30 shared
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas    542898 Jul 21 16:30 input.tar.gz
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas         0 Jul 21 16:30 boinc_lockfile
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas      2632 Jul 21 16:30 pandaJob.out
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas    977350 Jul 21 16:31 agis_schedconf.cvmfs.json
[2025-07-22 05:35:15] drwx------. 4 boincer umatlas      4096 Jul 21 16:31 pilot3
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas      6858 Jul 22 05:28 init_data.xml
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas 260923432 Jul 22 05:31 HITS.45697523._000438.pool.root.1
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas       532 Jul 22 05:32 boinc_task_state.xml
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas      1040 Jul 22 05:33 memory_monitor_summary.json
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas   1593031 Jul 22 05:33 agis_ddmendpoints.agis.ALL.json
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas    633118 Jul 22 05:33 log.45697523._000438.job.log.tgz.1
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas        95 Jul 22 05:34 pilot_heartbeat.json
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas      7827 Jul 22 05:34 heartbeat.json
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas      8192 Jul 22 05:34 boinc_mmap_file
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas        29 Jul 22 05:34 wrapper_checkpoint.txt
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas       823 Jul 22 05:35 pilotlog.txt
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas   3002455 Jul 22 05:35 log.45697523._000438.job.log.1
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas       357 Jul 22 05:35 output.list
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas       620 Jul 22 05:35 runtime_log
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas   3655680 Jul 22 05:35 result.tar.gz
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas      8671 Jul 22 05:35 runtime_log.err
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas       661 Jul 22 05:35 RobNDmf8By7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm80FLDmS1ETwm.diag
[2025-07-22 05:35:15] -rw-r--r--. 1 boincer umatlas     21371 Jul 22 05:35 stderr.txt
[2025-07-22 05:35:15] HITS file was successfully produced:
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas 260923432 Jul 22 05:31 shared/HITS.pool.root.1
[2025-07-22 05:35:15]  *** Contents of shared directory: ***
[2025-07-22 05:35:15] total 568948
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas 317445128 Jul 21 16:30 ATLAS.root_0
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas     15095 Jul 21 16:30 start_atlas.sh
[2025-07-22 05:35:15] -rw-r--r--. 2 boincer umatlas    542898 Jul 21 16:30 input.tar.gz
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas 260923432 Jul 22 05:31 HITS.pool.root.1
[2025-07-22 05:35:15] -rw-------. 1 boincer umatlas   3655680 Jul 22 05:35 result.tar.gz
05:35:17 (3201988): run_atlas exited; CPU time 170165.045187
05:35:17 (3201988): called boinc_finish(0)

</stderr_txt>
]]>

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