Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:33:52 (3924151): wrapper (7.7.26015): starting
14:33:52 (3924151): wrapper: running run_atlas (--nthreads 4)
[2025-07-22 14:33:52] Arguments: --nthreads 4
[2025-07-22 14:33:52] Threads: 4
[2025-07-22 14:33:52] Checking for CVMFS
[2025-07-22 14:33:52] No cvmfs_config command found, will try listing directly
[2025-07-22 14:33:52] CVMFS is ok
[2025-07-22 14:33:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 14:33:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 14:33:52] Further information can be found at the LHC@home message board.
[2025-07-22 14:33:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 14:33:52] Checking for apptainer binary...
[2025-07-22 14:33:52] which: no apptainer in ((null))
[2025-07-22 14:33:52] apptainer is not installed, using version from CVMFS
[2025-07-22 14:33:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 14:33:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-22 14:33:52] apptainer works
[2025-07-22 14:33:52] Set ATHENA_PROC_NUMBER=4
[2025-07-22 14:33:52] Set ATHENA_CORE_NUMBER=4
[2025-07-22 14:33:52] Starting ATLAS job with PandaID=6741673680
[2025-07-22 14:33:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:05:09 (396788): wrapper (7.7.26015): starting
17:05:09 (396788): wrapper: running run_atlas (--nthreads 4)
[2025-07-22 17:05:09] Arguments: --nthreads 4
[2025-07-22 17:05:09] Threads: 4
[2025-07-22 17:05:09] This job has been restarted, cleaning up previous attempt
[2025-07-22 17:05:09] Checking for CVMFS
[2025-07-22 17:05:09] No cvmfs_config command found, will try listing directly
[2025-07-22 17:05:09] CVMFS is ok
[2025-07-22 17:05:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-22 17:05:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-22 17:05:09] Further information can be found at the LHC@home message board.
[2025-07-22 17:05:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-22 17:05:09] Checking for apptainer binary...
[2025-07-22 17:05:09] which: no apptainer in ((null))
[2025-07-22 17:05:09] apptainer is not installed, using version from CVMFS
[2025-07-22 17:05:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-22 17:05:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-07-22 17:05:10] apptainer works
[2025-07-22 17:05:10] Set ATHENA_PROC_NUMBER=4
[2025-07-22 17:05:10] Set ATHENA_CORE_NUMBER=4
[2025-07-22 17:05:10] Starting ATLAS job with PandaID=6741673680
[2025-07-22 17:05:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-22 20:17:32]  *** The last 200 lines of the pilot log: ***
[2025-07-22 20:17:32] 2025-07-22 18:16:59,681 | INFO     | chi2: 1.3198246362018262
[2025-07-22 20:17:32] 2025-07-22 18:16:59,681 | INFO     | current chi2=1.3198246362018262 (change=-0.027277706946756883 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,682 | INFO     | right removable region: 182
[2025-07-22 20:17:32] 2025-07-22 18:16:59,682 | INFO     | sum of square deviations: 1900284932.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,683 | INFO     | sum of deviations: 6355753419.000001
[2025-07-22 20:17:32] 2025-07-22 18:16:59,683 | INFO     | mean x: 1753202610.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,683 | INFO     | mean y: 2358282.2513661203
[2025-07-22 20:17:32] 2025-07-22 18:16:59,683 | INFO     | -- intersect: -5861458924.876405
[2025-07-22 20:17:32] 2025-07-22 18:16:59,683 | INFO     | intersect: -5861458924.876405
[2025-07-22 20:17:32] 2025-07-22 18:16:59,684 | INFO     | chi2: 0.003645884531874746
[2025-07-22 20:17:32] 2025-07-22 18:16:59,684 | INFO     | current chi2=0.003645884531874746 (change=99.72368457554573 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,684 | INFO     | sum of square deviations: 1748737904.5
[2025-07-22 20:17:32] 2025-07-22 18:16:59,685 | INFO     | sum of deviations: 4871887152.499999
[2025-07-22 20:17:32] 2025-07-22 18:16:59,685 | INFO     | mean x: 1753202762.5
[2025-07-22 20:17:32] 2025-07-22 18:16:59,685 | INFO     | mean y: 2359773.095505618
[2025-07-22 20:17:32] 2025-07-22 18:16:59,685 | INFO     | -- intersect: -4881966227.0282345
[2025-07-22 20:17:32] 2025-07-22 18:16:59,686 | INFO     | intersect: -4881966227.0282345
[2025-07-22 20:17:32] 2025-07-22 18:16:59,686 | INFO     | chi2: 0.0017959954545367141
[2025-07-22 20:17:32] 2025-07-22 18:16:59,686 | INFO     | current chi2=0.0017959954545367141 (change=50.739102162042485 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,686 | INFO     | sum of square deviations: 1605470102.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,687 | INFO     | sum of deviations: 3590396316.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,687 | INFO     | mean x: 1753202915.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,687 | INFO     | mean y: 2361134.485549133
[2025-07-22 20:17:32] 2025-07-22 18:16:59,687 | INFO     | -- intersect: -3918417757.2390018
[2025-07-22 20:17:32] 2025-07-22 18:16:59,688 | INFO     | intersect: -3918417757.2390018
[2025-07-22 20:17:32] 2025-07-22 18:16:59,688 | INFO     | chi2: 0.0006863269022570429
[2025-07-22 20:17:32] 2025-07-22 18:16:59,688 | INFO     | current chi2=0.0006863269022570429 (change=61.7857105081547 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,688 | INFO     | sum of square deviations: 1470248962.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,689 | INFO     | sum of deviations: 2924614561.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,689 | INFO     | mean x: 1753203067.5
[2025-07-22 20:17:32] 2025-07-22 18:16:59,689 | INFO     | mean y: 2361882.130952381
[2025-07-22 20:17:32] 2025-07-22 18:16:59,690 | INFO     | -- intersect: -3485104085.962937
[2025-07-22 20:17:32] 2025-07-22 18:16:59,690 | INFO     | intersect: -3485104085.962937
[2025-07-22 20:17:32] 2025-07-22 18:16:59,690 | INFO     | chi2: 0.0004495932970357086
[2025-07-22 20:17:32] 2025-07-22 18:16:59,690 | INFO     | current chi2=0.0004495932970357086 (change=34.49283489293749 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,690 | INFO     | sum of square deviations: 1342841922.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,691 | INFO     | sum of deviations: 2460200088.9999995
[2025-07-22 20:17:32] 2025-07-22 18:16:59,691 | INFO     | mean x: 1753203220.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,691 | INFO     | mean y: 2362438.1533742333
[2025-07-22 20:17:32] 2025-07-22 18:16:59,691 | INFO     | -- intersect: -3209654290.8559885
[2025-07-22 20:17:32] 2025-07-22 18:16:59,692 | INFO     | intersect: -3209654290.8559885
[2025-07-22 20:17:32] 2025-07-22 18:16:59,692 | INFO     | chi2: 0.0003805385191518749
[2025-07-22 20:17:32] 2025-07-22 18:16:59,692 | INFO     | current chi2=0.0003805385191518749 (change=15.359387770932246 %)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,692 | INFO     | left removable region: 50
[2025-07-22 20:17:32] 2025-07-22 18:16:59,692 | INFO     | sum of square deviations: 713140813.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | sum of deviations: 712300416.0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | mean x: 1753203799.5
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | mean y: 2364658.1363636362
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | -- intersect: -1748773087.6662042
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | intersect: -1748773087.6662042
[2025-07-22 20:17:32] 2025-07-22 18:16:59,693 | INFO     | chi2: 5.293453554268718e-05
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | -- intersect: -1748773087.6662042
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | current memory leak: 1.00 B/s (using 132 data points, chi2=0.00)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | could have reported an average CPU frequency of 2718 MHz (10 samples)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | ..............................
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | . Timing measurements:
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | . get job = 0 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,694 | INFO     | . initial setup = 0 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | . payload setup = 8 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | . stage-in = 0 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | . payload execution = 11461 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | . stage-out = 1 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | . log creation = 0 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,695 | INFO     | ..............................
[2025-07-22 20:17:32] 2025-07-22 18:16:59,895 | INFO     | 
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | job summary report
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | --------------------------------------------------
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | PanDA job id: 6741673680
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | task id: 45697453
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | errors: (none)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | pilot state: finished 
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | transexitcode: 0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | exeerrorcode: 0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | exeerrordiag: 
[2025-07-22 20:17:32] 2025-07-22 18:16:59,896 | INFO     | exitcode: 0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | exitmsg: OK
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | cpuconsumptiontime: 43984 s
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | nevents: 400
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | neventsw: 0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | pid: 408831
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | pgrp: 408831
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | corecount: 4
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | event service: False
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | sizes: {0: 2397556, 5: 2397818, 11: 2397874, 11473: 2427408, 11475: 2436484, 11481: 2436622}
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | --------------------------------------------------
[2025-07-22 20:17:32] 2025-07-22 18:16:59,897 | INFO     | 
[2025-07-22 20:17:32] 2025-07-22 18:16:59,898 | INFO     | executing command: ls -lF /scratch/boinc/var/slot84/slots/0
[2025-07-22 20:17:32] 2025-07-22 18:16:59,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-22 20:17:32] 2025-07-22 18:16:59,929 | INFO     | job 6741673680 has completed (purged errors)
[2025-07-22 20:17:32] 2025-07-22 18:16:59,929 | INFO     | overall cleanup function is called
[2025-07-22 20:17:32] 2025-07-22 18:17:00,938 | INFO     | --- collectZombieJob: --- 10, [408831]
[2025-07-22 20:17:32] 2025-07-22 18:17:00,939 | INFO     | zombie collector waiting for pid 408831
[2025-07-22 20:17:32] 2025-07-22 18:17:00,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-22 20:17:32] 2025-07-22 18:17:00,939 | INFO     | collected zombie processes
[2025-07-22 20:17:32] 2025-07-22 18:17:00,939 | INFO     | will attempt to kill all subprocesses of pid=408831
[2025-07-22 20:17:32] 2025-07-22 18:17:01,628 | INFO     | process IDs to be killed: [408831] (in reverse order)
[2025-07-22 20:17:32] 2025-07-22 18:17:01,867 | WARNING  | found no corresponding commands to process id(s)
[2025-07-22 20:17:32] 2025-07-22 18:17:01,867 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-22 20:17:32] 2025-07-22 18:17:01,889 | INFO     | did not find any defunct processes belonging to 408831
[2025-07-22 20:17:32] 2025-07-22 18:17:01,912 | INFO     | did not find any defunct processes belonging to 408831
[2025-07-22 20:17:32] 2025-07-22 18:17:01,912 | INFO     | ready for new job
[2025-07-22 20:17:32] 2025-07-22 18:17:01,912 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-22 20:17:32] 2025-07-22 18:17:01,915 | INFO     | ***************************************
[2025-07-22 20:17:32] 2025-07-22 18:17:01,915 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-22 20:17:32] 2025-07-22 18:17:01,915 | INFO     | ***************************************
[2025-07-22 20:17:32] 2025-07-22 18:17:01,915 | INFO     | 
[2025-07-22 20:17:32] 2025-07-22 18:17:01,924 | INFO     | architecture information:
[2025-07-22 20:17:32] 2025-07-22 18:17:01,924 | INFO     | executing command: cat /etc/os-release
[2025-07-22 20:17:32] 2025-07-22 18:17:01,944 | INFO     | cat /etc/os-release:
[2025-07-22 20:17:32] NAME="CentOS Linux"
[2025-07-22 20:17:32] VERSION="7 (Core)"
[2025-07-22 20:17:32] ID="centos"
[2025-07-22 20:17:32] ID_LIKE="rhel fedora"
[2025-07-22 20:17:32] VERSION_ID="7"
[2025-07-22 20:17:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-22 20:17:32] ANSI_COLOR="0;31"
[2025-07-22 20:17:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-22 20:17:32] HOME_URL="https://www.centos.org/"
[2025-07-22 20:17:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-22 20:17:32] 
[2025-07-22 20:17:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-22 20:17:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-22 20:17:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-22 20:17:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-22 20:17:32] 
[2025-07-22 20:17:32] 2025-07-22 18:17:01,944 | INFO     | ***************************************
[2025-07-22 20:17:32] 2025-07-22 18:17:02,446 | INFO     | executing command: df -mP /scratch/boinc/var/slot84/slots/0
[2025-07-22 20:17:32] 2025-07-22 18:17:02,468 | INFO     | sufficient remaining disk space (3244549996544 B)
[2025-07-22 20:17:32] 2025-07-22 18:17:02,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-22 20:17:32] 2025-07-22 18:17:02,469 | INFO     | current server update state: UPDATING_FINAL
[2025-07-22 20:17:32] 2025-07-22 18:17:02,469 | INFO     | update_server=False
[2025-07-22 20:17:32] 2025-07-22 18:17:02,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-22 20:17:32] 2025-07-22 18:17:02,470 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-22 20:17:32] 2025-07-22 18:17:02,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:17:32] 2025-07-22 18:17:02,471 | INFO     | aborting loop
[2025-07-22 20:17:32] 2025-07-22 18:17:02,789 | INFO     | all payload control threads have been joined
[2025-07-22 20:17:32] 2025-07-22 18:17:02,804 | INFO     | all job control threads have been joined
[2025-07-22 20:17:32] 2025-07-22 18:17:03,000 | INFO     | all data control threads have been joined
[2025-07-22 20:17:32] 2025-07-22 18:17:03,474 | INFO     | [job] retrieve thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,475 | INFO     | [job] job monitor thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,691 | INFO     | [payload] execute_payloads thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,783 | INFO     | [job] validate thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,786 | INFO     | [data] copytool_in thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,794 | INFO     | [payload] control thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,810 | INFO     | [job] control thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:03,876 | INFO     | [payload] failed_post thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,006 | INFO     | [data] control thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,239 | INFO     | [payload] validate_pre thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,324 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-22 20:17:32] 2025-07-22 18:17:04,375 | INFO     | [job] create_data_payload thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,475 | INFO     | [data] copytool_out thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,487 | INFO     | [payload] validate_post thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:04,810 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-22 20:17:32] 2025-07-22 18:17:05,816 | INFO     | [job] queue monitor thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:08,330 | INFO     | [data] queue_monitor thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:13,459 | INFO     | job.realtimelogging is not enabled
[2025-07-22 20:17:32] 2025-07-22 18:17:14,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-22 20:17:32] 2025-07-22 18:17:15,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22720438617920)>', '<ExcThread(monitor, started 22720188188416)>']
[2025-07-22 20:17:32] 2025-07-22 18:17:20,259 | INFO     | all workflow threads have been joined
[2025-07-22 20:17:32] 2025-07-22 18:17:20,260 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-22 20:17:32] 2025-07-22 18:17:20,260 | INFO     | traces error code: 0
[2025-07-22 20:17:32] 2025-07-22 18:17:20,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-22 20:17:32] 2025-07-22 18:17:31,619 | INFO     | PID=400710 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-22 20:17:32] 2025-07-22 18:17:31,619 | INFO     | .. there are 20 such processes running
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | INFO     | found 0 job(s) in 20 queues
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | CRITICAL | thread 'MainThread' is not alive
[2025-07-22 20:17:32] 2025-07-22 18:17:31,620 | INFO     | [monitor] control thread has ended
[2025-07-22 20:17:32] 2025-07-22 18:17:31,791 [wrapper] ==== pilot stdout END ====
[2025-07-22 20:17:32] 2025-07-22 18:17:31,795 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-22 20:17:32] 2025-07-22 18:17:31,798 [wrapper] pilotpid: 400710
[2025-07-22 20:17:32] 2025-07-22 18:17:31,802 [wrapper] Pilot exit status: 0
[2025-07-22 20:17:32] 2025-07-22 18:17:31,816 [wrapper] pandaids: 6741673680 6741673680
[2025-07-22 20:17:32] 2025-07-22 18:17:31,950 [wrapper] cleanup supervisor_pilot 1384656 400711
[2025-07-22 20:17:32] 2025-07-22 18:17:31,954 [wrapper] Test setup, not cleaning
[2025-07-22 20:17:32] 2025-07-22 18:17:31,958 [wrapper] apfmon messages muted
[2025-07-22 20:17:32] 2025-07-22 18:17:31,961 [wrapper] ==== wrapper stdout END ====
[2025-07-22 20:17:32] 2025-07-22 18:17:31,965 [wrapper] ==== wrapper stderr END ====
[2025-07-22 20:17:32]  *** Error codes and diagnostics ***
[2025-07-22 20:17:32]     "exeErrorCode": 0,
[2025-07-22 20:17:32]     "exeErrorDiag": "",
[2025-07-22 20:17:32]     "pilotErrorCode": 0,
[2025-07-22 20:17:32]     "pilotErrorDiag": "",
[2025-07-22 20:17:32]  *** Listing of results directory ***
[2025-07-22 20:17:32] total 885836
[2025-07-22 20:17:32] drwx------ 4 boinc boinc      4096 Jun 17 12:04 pilot3
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc    530466 Jul 21 22:13 pilot3.tar.gz
[2025-07-22 20:17:32] -rwx------ 1 boinc boinc     36292 Jul 21 22:15 runpilot2-wrapper.sh
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc      5112 Jul 21 22:16 queuedata.json
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc       100 Jul 22 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-22 20:17:32] -rwxr-xr-x 1 boinc boinc      7986 Jul 22 14:33 run_atlas
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc       105 Jul 22 14:33 job.xml
[2025-07-22 20:17:32] -rw-r--r-- 3 boinc boinc 320138748 Jul 22 14:33 EVNT.45697451._000008.pool.root.1
[2025-07-22 20:17:32] -rw-r--r-- 3 boinc boinc 320138748 Jul 22 14:33 ATLAS.root_0
[2025-07-22 20:17:32] -rw-r--r-- 2 boinc boinc     15095 Jul 22 14:33 start_atlas.sh
[2025-07-22 20:17:32] drwxrwx--x 2 boinc boinc      4096 Jul 22 14:33 shared
[2025-07-22 20:17:32] -rw-r--r-- 2 boinc boinc    542895 Jul 22 14:33 input.tar.gz
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc         0 Jul 22 14:33 boinc_lockfile
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc      6692 Jul 22 17:05 init_data.xml
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc      2631 Jul 22 17:05 pandaJob.out
[2025-07-22 20:17:32] -rw------- 1 boinc boinc    977712 Jul 22 17:05 agis_schedconf.cvmfs.json
[2025-07-22 20:17:32] -rw------- 1 boinc boinc 260167361 Jul 22 20:16 HITS.45697453._000195.pool.root.1
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc       532 Jul 22 20:16 boinc_task_state.xml
[2025-07-22 20:17:32] -rw------- 1 boinc boinc      1027 Jul 22 20:16 memory_monitor_summary.json
[2025-07-22 20:17:32] -rw------- 1 boinc boinc   1593031 Jul 22 20:16 agis_ddmendpoints.agis.ALL.json
[2025-07-22 20:17:32] -rw------- 1 boinc boinc    321232 Jul 22 20:16 log.45697453._000195.job.log.tgz.1
[2025-07-22 20:17:32] -rw------- 1 boinc boinc      7777 Jul 22 20:16 heartbeat.json
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc      8192 Jul 22 20:17 boinc_mmap_file
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc        28 Jul 22 20:17 wrapper_checkpoint.txt
[2025-07-22 20:17:32] -rw------- 1 boinc boinc        97 Jul 22 20:17 pilot_heartbeat.json
[2025-07-22 20:17:32] -rw------- 1 boinc boinc       892 Jul 22 20:17 pilotlog.txt
[2025-07-22 20:17:32] -rw------- 1 boinc boinc   1066037 Jul 22 20:17 log.45697453._000195.job.log.1
[2025-07-22 20:17:32] -rw------- 1 boinc boinc       357 Jul 22 20:17 output.list
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc       620 Jul 22 20:17 runtime_log
[2025-07-22 20:17:32] -rw------- 1 boinc boinc   1402880 Jul 22 20:17 result.tar.gz
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc      9104 Jul 22 20:17 runtime_log.err
[2025-07-22 20:17:32] -rw------- 1 boinc boinc       789 Jul 22 20:17 XAZNDmc6By7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOvFLDm2Mh65m.diag
[2025-07-22 20:17:32] -rw-r--r-- 1 boinc boinc     22620 Jul 22 20:17 stderr.txt
[2025-07-22 20:17:32] HITS file was successfully produced:
[2025-07-22 20:17:32] -rw------- 1 boinc boinc 260167361 Jul 22 20:16 shared/HITS.pool.root.1
[2025-07-22 20:17:32]  *** Contents of shared directory: ***
[2025-07-22 20:17:32] total 568636
[2025-07-22 20:17:32] -rw-r--r-- 3 boinc boinc 320138748 Jul 22 14:33 ATLAS.root_0
[2025-07-22 20:17:32] -rw-r--r-- 2 boinc boinc     15095 Jul 22 14:33 start_atlas.sh
[2025-07-22 20:17:32] -rw-r--r-- 2 boinc boinc    542895 Jul 22 14:33 input.tar.gz
[2025-07-22 20:17:32] -rw------- 1 boinc boinc 260167361 Jul 22 20:16 HITS.pool.root.1
[2025-07-22 20:17:32] -rw------- 1 boinc boinc   1402880 Jul 22 20:17 result.tar.gz
20:17:33 (396788): run_atlas exited; CPU time 44636.881572
20:17:33 (396788): called boinc_finish(0)

</stderr_txt>
]]>

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