Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-25 16:34:48 (6972): Detected: vboxwrapper 26206
2025-07-25 16:34:48 (6972): Detected: BOINC client v8.0.2
2025-07-25 16:34:49 (6972): Detected: VirtualBox VboxManage Interface (Version: 7.0.8)
2025-07-25 16:34:49 (6972): Successfully copied 'init_data.xml' to the shared directory.
2025-07-25 16:34:50 (6972): Create VM. (boinc_0b33605e8e3e837c, slot#8)
2025-07-25 16:34:51 (6972): Setting Memory Size for VM. (4800MB)
2025-07-25 16:34:51 (6972): Setting CPU Count for VM. (8)
2025-07-25 16:34:51 (6972): Setting Chipset Options for VM.
2025-07-25 16:34:51 (6972): Setting Graphics Controller Options for VM.
2025-07-25 16:34:52 (6972): Setting Boot Options for VM.
2025-07-25 16:34:52 (6972): Setting Network Configuration for NAT.
2025-07-25 16:34:52 (6972): Enabling VM Network Access.
2025-07-25 16:34:53 (6972): Disabling USB Support for VM.
2025-07-25 16:34:53 (6972): Disabling COM Port Support for VM.
2025-07-25 16:34:53 (6972): Disabling LPT Port Support for VM.
2025-07-25 16:34:54 (6972): Disabling Audio Support for VM.
2025-07-25 16:34:54 (6972): Disabling Clipboard Support for VM.
2025-07-25 16:34:54 (6972): Disabling Drag and Drop Support for VM.
2025-07-25 16:34:54 (6972): Adding storage controller(s) to VM.
2025-07-25 16:34:55 (6972): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-25 16:34:58 (6972): Adding VirtualBox Guest Additions to VM.
2025-07-25 16:34:58 (6972): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-25 16:34:58 (6972): forwarding host port 55659 to guest port 80
2025-07-25 16:34:59 (6972): Enabling remote desktop for VM.
2025-07-25 16:34:59 (6972): Required extension pack not installed, remote desktop not enabled.
2025-07-25 16:34:59 (6972): Enabling shared directory for VM.
2025-07-25 16:35:00 (6972): Starting VM using VBoxManage interface. (boinc_0b33605e8e3e837c, slot#8)
2025-07-25 16:35:09 (6972): Successfully started VM. (PID = '11380')
2025-07-25 16:35:09 (6972): Reporting VM Process ID to BOINC.
2025-07-25 16:35:09 (6972): Guest Log: BIOS: VirtualBox 7.0.8
2025-07-25 16:35:09 (6972): Guest Log: CPUID EDX: 0x178bfbff
2025-07-25 16:35:09 (6972): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-25 16:35:09 (6972): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-25 16:35:09 (6972): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-25 16:35:09 (6972): Detected: Web Application Enabled (http://localhost:55659)
2025-07-25 16:35:09 (6972): Preference change detected
2025-07-25 16:35:09 (6972): Setting CPU throttle for VM. (99%)
2025-07-25 16:35:09 (6972): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-25 16:35:11 (6972): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-25 16:35:11 (6972): Guest Log: BIOS: Booting from Hard Disk...
2025-07-25 16:35:14 (6972): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-25 16:35:14 (6972): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-25 16:35:14 (6972): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-25 16:35:24 (6972): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-25 16:35:24 (6972): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-25 16:35:37 (6972): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000366 main     Log opened 2025-07-25T16:35:35.435806000Z
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000663 main     OS Product: Linux
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000720 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000769 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000819 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000821 main     Process ID: 1369
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.000823 main     Package type: LINUX_64BITS_GENERIC
2025-07-25 16:35:37 (6972): Guest Log: 00:00:00.002316 main     5.2.32 r132073 started. Verbose level = 0
2025-07-25 16:35:38 (6972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-25 16:35:38 (6972): Guest Log: [INFO] Mounting shared directory
2025-07-25 16:35:38 (6972): Guest Log: [INFO] Checking for init_data.xml
2025-07-25 16:35:47 (6972): Guest Log: 00:00:10.025475 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 412 133 000ns (GuestNow=1 753 425 347 028 843 000 ns GuestLast=1 753 461 335 440 976 000 ns fSetTimeLastLoop=true )
2025-07-25 16:35:48 (6972): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-25 16:35:48 (6972): Guest Log: [INFO] Detected branch: prod
2025-07-25 16:35:49 (6972): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-25 16:35:49 (6972): Guest Log: Copying input files
2025-07-25 16:35:51 (6972): Guest Log: Copied input files into RunAtlas.
2025-07-25 16:35:51 (6972): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-25 16:35:51 (6972): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-25 16:35:51 (6972): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-25 16:35:51 (6972): Guest Log: Further information can be found at the LHC@home message board.
2025-07-25 16:36:02 (6972): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-25 16:36:02 (6972): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-25 16:36:02 (6972): Guest Log: 2.6.3.0 1649 0 30168 148730 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-25 16:36:03 (6972): Guest Log: copied the webapp to /var/www
2025-07-25 16:36:03 (6972): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-25 16:36:03 (6972): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-25 16:36:03 (6972): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-25 16:36:03 (6972): Guest Log:  *** Starting ATLAS job. (PandaID=6741676216 taskID=45697523) ***
2025-07-25 18:15:30 (6972): Status Report: Elapsed Time: '6000.000000'
2025-07-25 18:15:30 (6972): Status Report: CPU Time: '37618.671875'
2025-07-25 19:55:54 (6972): Status Report: Elapsed Time: '12000.000000'
2025-07-25 19:55:54 (6972): Status Report: CPU Time: '81212.312500'
2025-07-25 21:36:18 (6972): Status Report: Elapsed Time: '18000.000000'
2025-07-25 21:36:18 (6972): Status Report: CPU Time: '124446.734375'
2025-07-25 21:51:17 (6972): Guest Log:  *** Job finished ***
2025-07-25 21:51:17 (6972): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:04,436 | INFO     | [job] validate thread has finished
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:04,847 | INFO     | [data] copytool_out thread has finished
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:07,701 | INFO     | [data] queue_monitor thread has finished
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:08,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952279201600)>', '<ExcThread(monitor, started 139951660308224)>']
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:08,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:08,456 | INFO     | [monitor] control thread has ended
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,443 | INFO     | all workflow threads have been joined
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,443 | INFO     | end of generic workflow (traces error code: 0)
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,443 | INFO     | traces error code: 0
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,444 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,567 [wrapper] ==== pilot stdout END ====
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,572 [wrapper] ==== wrapper stdout RESUME ====
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,578 [wrapper] pilotpid: 6001
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:13,583 [wrapper] Pilot exit status: 0
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,305 [wrapper] pandaids: 6741676216
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,358 [wrapper] cleanup supervisor_pilot 16753 6002
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,364 [wrapper] Test setup, not cleaning
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,372 [wrapper] apfmon messages muted
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,378 [wrapper] ==== wrapper stdout END ====
2025-07-25 21:51:17 (6972): Guest Log: 2025-07-25 11:51:14,384 [wrapper] ==== wrapper stderr END ====
2025-07-25 21:51:17 (6972): Guest Log:  *** Error codes and diagnostics ***
2025-07-25 21:51:17 (6972): Guest Log:     "exeErrorCode": 0,
2025-07-25 21:51:17 (6972): Guest Log:     "exeErrorDiag": "",
2025-07-25 21:51:17 (6972): Guest Log:     "pilotErrorCode": 0,
2025-07-25 21:51:17 (6972): Guest Log:     "pilotErrorDiag": "",
2025-07-25 21:51:17 (6972): Guest Log:  *** Listing of results directory ***
2025-07-25 21:51:17 (6972): Guest Log: total 258904
2025-07-25 21:51:17 (6972): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 21 20:13 pilot3.tar.gz
2025-07-25 21:51:17 (6972): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 21 20:13 queuedata.json
2025-07-25 21:51:17 (6972): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 21 20:15 runpilot2-wrapper.sh
2025-07-25 21:51:17 (6972): Guest Log: -rwxr-xr-x. 1 atlas atlas      8837 Jul 25 06:35 init_data.xml
2025-07-25 21:51:17 (6972): Guest Log: -rwxr-xr-x. 1 atlas atlas    542900 Jul 25 06:35 input.tar.gz
2025-07-25 21:51:17 (6972): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 25 06:35 start_atlas.sh
2025-07-25 21:51:17 (6972): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 25 06:35 EVNT.45697521._000041.pool.root.1 -> /data/./ATLAS.root_0
2025-07-25 21:51:17 (6972): Guest Log: -rw-r--r--. 1 atlas atlas      2631 Jul 25 06:36 pandaJob.out
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas    979701 Jul 25 06:37 agis_schedconf.cvmfs.json
2025-07-25 21:51:17 (6972): Guest Log: drwx------. 4 atlas atlas      4096 Jul 25 06:37 pilot3
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas 257474542 Jul 25 11:49 HITS.45697523._001001.pool.root.1
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas        95 Jul 25 11:50 pilot_heartbeat.json
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas      1036 Jul 25 11:50 memory_monitor_summary.json
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 25 11:50 agis_ddmendpoints.agis.ALL.json
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas    409961 Jul 25 11:50 log.45697523._001001.job.log.tgz.1
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas      7828 Jul 25 11:51 heartbeat.json
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 25 11:51 pilotlog.txt
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas   1502047 Jul 25 11:51 log.45697523._001001.job.log.1
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas       357 Jul 25 11:51 output.list
2025-07-25 21:51:17 (6972): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 25 11:51 runtime_log
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas   1935360 Jul 25 11:51 result.tar.gz
2025-07-25 21:51:17 (6972): Guest Log: -rw-r--r--. 1 atlas atlas      8603 Jul 25 11:51 runtime_log.err
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas       662 Jul 25 11:51 2W7KDmr5By7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGuFLDmHKGDOm.diag
2025-07-25 21:51:17 (6972): Guest Log: Looking for outputfile HITS.45697523._001001.pool.root.1
2025-07-25 21:51:17 (6972): Guest Log: HITS file was successfully produced
2025-07-25 21:51:17 (6972): Guest Log: -rw-------. 1 atlas atlas 257474542 Jul 25 11:49 /home/atlas/RunAtlas/HITS.45697523._001001.pool.root.1
2025-07-25 21:51:19 (6972): Guest Log: Successfully finished the ATLAS job!
2025-07-25 21:51:19 (6972): Guest Log: Copying the results back to the shared directory!
2025-07-25 21:51:19 (6972): Guest Log:  *** Contents of shared directory: ***
2025-07-25 21:51:19 (6972): Guest Log: total 564336
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root 317893822 Jul 25 06:34 ATLAS.root_0
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root 257474542 Jul 25 11:51 HITS.pool.root.1
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root      8837 Jul 25 06:34 init_data.xml
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root    542900 Jul 21 20:16 input.tar.gz
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root   1935360 Jul 25 11:51 result.tar.gz
2025-07-25 21:51:19 (6972): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 21 20:16 start_atlas.sh
2025-07-25 21:51:19 (6972): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-25 21:51:19 (6972): VM Completion File Detected.
2025-07-25 21:51:19 (6972): Powering off VM.
2025-07-25 21:51:21 (6972): Successfully stopped VM.
2025-07-25 21:51:21 (6972): Deregistering VM. (boinc_0b33605e8e3e837c, slot#8)
2025-07-25 21:51:21 (6972): Removing network bandwidth throttle group from VM.
2025-07-25 21:51:21 (6972): Removing VM from VirtualBox.
21:51:26 (6972): called boinc_finish(0)

</stderr_txt>
]]>

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