Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:48 (26114): wrapper (7.7.26015): starting
08:31:48 (26114): wrapper: running run_atlas (--nthreads 8)
[2025-07-21 08:31:48] Arguments: --nthreads 8
[2025-07-21 08:31:48] Threads: 8
[2025-07-21 08:31:48] Checking for CVMFS
[2025-07-21 08:31:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-21 08:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-21 08:31:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-21 08:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-21 08:31:48] 2.11.2.0 2860 103366 88516 148579 3 1 17301642 20275201 1 130560 0 24156199 99.954 9943525 10838 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-21 08:31:48] CVMFS is ok
[2025-07-21 08:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-21 08:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-21 08:31:48] Further information can be found at the LHC@home message board.
[2025-07-21 08:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-21 08:31:48] Checking for apptainer binary...
[2025-07-21 08:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-21 08:31:48] Running /usr/bin/apptainer --version
[2025-07-21 08:31:48] apptainer version 1.3.2-1.el7
[2025-07-21 08:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-21 08:31:50] c-204-39.aglt2.org
[2025-07-21 08:31:50] apptainer works
[2025-07-21 08:31:50] Set ATHENA_PROC_NUMBER=8
[2025-07-21 08:31:50] Set ATHENA_CORE_NUMBER=8
[2025-07-21 08:31:50] Starting ATLAS job with PandaID=6741376788
[2025-07-21 08:31:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-21 11:30:12]  *** The last 200 lines of the pilot log: ***
[2025-07-21 11:30:12] 2025-07-21 15:29:53,857 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-21 11:30:12] 2025-07-21 15:29:53,860 | INFO     | fitting pss+swap vs Time
[2025-07-21 11:30:12] 2025-07-21 15:29:53,860 | INFO     | sum of square deviations: 1661798600.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,861 | INFO     | sum of deviations: -18273264066.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,861 | INFO     | mean x: 1753106469.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,862 | INFO     | mean y: 2538106.017142857
[2025-07-21 11:30:12] 2025-07-21 15:29:53,862 | INFO     | -- intersect: 19279830458.92311
[2025-07-21 11:30:12] 2025-07-21 15:29:53,862 | INFO     | intersect: 19279830458.92311
[2025-07-21 11:30:12] 2025-07-21 15:29:53,862 | INFO     | chi2: 2.5094869641403137
[2025-07-21 11:30:12] 2025-07-21 15:29:53,863 | INFO     | sum of square deviations: 1523386702.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,863 | INFO     | sum of deviations: -5809893821.000003
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | mean x: 1753106316.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | mean y: 2551541.411764706
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | -- intersect: 6688550269.820271
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | intersect: 6688550269.820271
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | chi2: 1.747016696903265
[2025-07-21 11:30:12] 2025-07-21 15:29:53,864 | INFO     | current chi2=1.747016696903265 (change=30.383511774816157 %)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,865 | INFO     | sum of square deviations: 1392881930.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | sum of deviations: -5190137602.999998
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | mean x: 1753106164.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | mean y: 2552265.9515151517
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | -- intersect: 6534952484.416179
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | intersect: 6534952484.416179
[2025-07-21 11:30:12] 2025-07-21 15:29:53,866 | INFO     | chi2: 1.747359845039182
[2025-07-21 11:30:12] 2025-07-21 15:29:53,867 | INFO     | current chi2=1.747359845039182 (change=-0.019641949417274023 %)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,867 | INFO     | right removable region: 164
[2025-07-21 11:30:12] 2025-07-21 15:29:53,867 | INFO     | sum of square deviations: 1523386702.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,868 | INFO     | sum of deviations: -45595884140.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,868 | INFO     | mean x: 1753106621.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,868 | INFO     | mean y: 2567817.9235294117
[2025-07-21 11:30:12] 2025-07-21 15:29:53,868 | INFO     | -- intersect: 52474107886.29785
[2025-07-21 11:30:12] 2025-07-21 15:29:53,868 | INFO     | intersect: 52474107886.29785
[2025-07-21 11:30:12] 2025-07-21 15:29:53,869 | INFO     | chi2: 0.9966307673180961
[2025-07-21 11:30:12] 2025-07-21 15:29:53,869 | INFO     | current chi2=0.9966307673180961 (change=60.28547740794834 %)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,869 | INFO     | sum of square deviations: 1392881930.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,870 | INFO     | sum of deviations: -48062314190.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,870 | INFO     | mean x: 1753106774.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,870 | INFO     | mean y: 2570663.5939393938
[2025-07-21 11:30:12] 2025-07-21 15:29:53,870 | INFO     | -- intersect: 60494681851.0837
[2025-07-21 11:30:12] 2025-07-21 15:29:53,870 | INFO     | intersect: 60494681851.0837
[2025-07-21 11:30:12] 2025-07-21 15:29:53,871 | INFO     | chi2: 0.9529015351732923
[2025-07-21 11:30:12] 2025-07-21 15:29:53,871 | INFO     | current chi2=0.9529015351732923 (change=4.387706418343656 %)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,871 | INFO     | left removable region: 20
[2025-07-21 11:30:12] 2025-07-21 15:29:53,871 | INFO     | sum of square deviations: 925859220.0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,872 | INFO     | sum of deviations: -25729572713.999992
[2025-07-21 11:30:12] 2025-07-21 15:29:53,872 | INFO     | mean x: 1753106743.5
[2025-07-21 11:30:12] 2025-07-21 15:29:53,872 | INFO     | mean y: 2576267.6944444445
[2025-07-21 11:30:12] 2025-07-21 15:29:53,872 | INFO     | -- intersect: 48721308508.96001
[2025-07-21 11:30:12] 2025-07-21 15:29:53,873 | INFO     | intersect: 48721308508.96001
[2025-07-21 11:30:12] 2025-07-21 15:29:53,873 | INFO     | chi2: 0.14884198921451977
[2025-07-21 11:30:12] 2025-07-21 15:29:53,873 | INFO     | -- intersect: 48721308508.96001
[2025-07-21 11:30:12] 2025-07-21 15:29:53,873 | INFO     | current memory leak: -27.79 B/s (using 144 data points, chi2=0.15)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,873 | INFO     | could have reported an average CPU frequency of 2028 MHz (9 samples)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | ..............................
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . Timing measurements:
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . get job = 0 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . initial setup = 2 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . payload setup = 12 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . stage-in = 0 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . payload execution = 10624 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,874 | INFO     | . stage-out = 0 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,875 | INFO     | . log creation = 0 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,875 | INFO     | ..............................
[2025-07-21 11:30:12] 2025-07-21 15:29:53,969 | INFO     | 
[2025-07-21 11:30:12] 2025-07-21 15:29:53,969 | INFO     | job summary report
[2025-07-21 11:30:12] 2025-07-21 15:29:53,969 | INFO     | --------------------------------------------------
[2025-07-21 11:30:12] 2025-07-21 15:29:53,969 | INFO     | PanDA job id: 6741376788
[2025-07-21 11:30:12] 2025-07-21 15:29:53,969 | INFO     | task id: 45668738
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | errors: (none)
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | pilot state: finished 
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | transexitcode: 0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | exeerrorcode: 0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,970 | INFO     | exeerrordiag: 
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | exitcode: 0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | exitmsg: OK
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | cpuconsumptiontime: 78981 s
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | nevents: 400
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | neventsw: 0
[2025-07-21 11:30:12] 2025-07-21 15:29:53,971 | INFO     | pid: 3981
[2025-07-21 11:30:12] 2025-07-21 15:29:53,972 | INFO     | pgrp: 3981
[2025-07-21 11:30:12] 2025-07-21 15:29:53,972 | INFO     | corecount: 8
[2025-07-21 11:30:12] 2025-07-21 15:29:53,972 | INFO     | event service: False
[2025-07-21 11:30:12] 2025-07-21 15:29:53,972 | INFO     | sizes: {0: 2397235, 1: 2397434, 7: 2397696, 12: 2397724, 10641: 2426665, 10643: 2435663, 10644: 2435847, 10650: 2436105}
[2025-07-21 11:30:12] 2025-07-21 15:29:53,972 | INFO     | --------------------------------------------------
[2025-07-21 11:30:12] 2025-07-21 15:29:53,973 | INFO     | 
[2025-07-21 11:30:12] 2025-07-21 15:29:53,973 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-21 11:30:12] 2025-07-21 15:29:54,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-21 11:30:12] 2025-07-21 15:29:54,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-21 11:30:12] 2025-07-21 15:29:54,005 | INFO     | job 6741376788 has completed (purged errors)
[2025-07-21 11:30:12] 2025-07-21 15:29:54,006 | INFO     | overall cleanup function is called
[2025-07-21 11:30:12] 2025-07-21 15:29:54,979 | INFO     | PID=29850 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-21 11:30:12] 2025-07-21 15:29:55,013 | INFO     | --- collectZombieJob: --- 10, [3981]
[2025-07-21 11:30:12] 2025-07-21 15:29:55,014 | INFO     | zombie collector waiting for pid 3981
[2025-07-21 11:30:12] 2025-07-21 15:29:55,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-21 11:30:12] 2025-07-21 15:29:55,014 | INFO     | collected zombie processes
[2025-07-21 11:30:12] 2025-07-21 15:29:55,014 | INFO     | will attempt to kill all subprocesses of pid=3981
[2025-07-21 11:30:12] 2025-07-21 15:29:55,098 | INFO     | process IDs to be killed: [3981] (in reverse order)
[2025-07-21 11:30:12] 2025-07-21 15:29:55,153 | WARNING  | found no corresponding commands to process id(s)
[2025-07-21 11:30:12] 2025-07-21 15:29:55,154 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-21 11:30:12] 2025-07-21 15:29:55,158 | INFO     | did not find any defunct processes belonging to 3981
[2025-07-21 11:30:12] 2025-07-21 15:29:55,160 | INFO     | did not find any defunct processes belonging to 3981
[2025-07-21 11:30:12] 2025-07-21 15:29:55,160 | INFO     | ready for new job
[2025-07-21 11:30:12] 2025-07-21 15:29:55,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-21 11:30:12] 2025-07-21 15:29:55,162 | INFO     | ***************************************
[2025-07-21 11:30:12] 2025-07-21 15:29:55,162 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-21 11:30:12] 2025-07-21 15:29:55,162 | INFO     | ***************************************
[2025-07-21 11:30:12] 2025-07-21 15:29:55,162 | INFO     | 
[2025-07-21 11:30:12] 2025-07-21 15:29:55,163 | INFO     | architecture information:
[2025-07-21 11:30:12] 2025-07-21 15:29:55,163 | INFO     | executing command: cat /etc/os-release
[2025-07-21 11:30:12] 2025-07-21 15:29:55,180 | INFO     | cat /etc/os-release:
[2025-07-21 11:30:12] NAME="CentOS Linux"
[2025-07-21 11:30:12] VERSION="7 (Core)"
[2025-07-21 11:30:12] ID="centos"
[2025-07-21 11:30:12] ID_LIKE="rhel fedora"
[2025-07-21 11:30:12] VERSION_ID="7"
[2025-07-21 11:30:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-21 11:30:12] ANSI_COLOR="0;31"
[2025-07-21 11:30:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-21 11:30:12] HOME_URL="https://www.centos.org/"
[2025-07-21 11:30:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-21 11:30:12] 
[2025-07-21 11:30:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-21 11:30:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-21 11:30:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-21 11:30:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-21 11:30:12] 
[2025-07-21 11:30:12] 2025-07-21 15:29:55,181 | INFO     | ***************************************
[2025-07-21 11:30:12] 2025-07-21 15:29:55,682 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-21 11:30:12] 2025-07-21 15:29:55,700 | INFO     | sufficient remaining disk space (18374197248 B)
[2025-07-21 11:30:12] 2025-07-21 15:29:55,701 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-21 11:30:12] 2025-07-21 15:29:55,701 | INFO     | current server update state: UPDATING_FINAL
[2025-07-21 11:30:12] 2025-07-21 15:29:55,701 | INFO     | update_server=False
[2025-07-21 11:30:12] 2025-07-21 15:29:55,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-21 11:30:12] 2025-07-21 15:29:55,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-21 11:30:12] 2025-07-21 15:29:55,702 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-21 11:30:12] 2025-07-21 15:29:55,703 | INFO     | found 0 job(s) in 20 queues
[2025-07-21 11:30:12] 2025-07-21 15:29:55,703 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-21 11:30:12] 2025-07-21 15:29:55,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-21 11:30:12] 2025-07-21 15:29:55,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-21 11:30:12] 2025-07-21 15:29:55,797 | INFO     | all data control threads have been joined
[2025-07-21 11:30:12] 2025-07-21 15:29:56,156 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-21 11:30:12] 2025-07-21 15:29:56,156 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-21 11:30:12] 2025-07-21 15:29:56,162 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-21 11:30:12] 2025-07-21 15:29:56,163 | INFO     | will abort loop
[2025-07-21 11:30:12] 2025-07-21 15:29:56,600 | INFO     | all payload control threads have been joined
[2025-07-21 11:30:12] 2025-07-21 15:29:56,705 | INFO     | [job] retrieve thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,709 | INFO     | [job] queue monitor thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,739 | INFO     | [job] validate thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,803 | INFO     | [data] control thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,817 | INFO     | [payload] validate_post thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,819 | INFO     | [payload] failed_post thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:56,820 | INFO     | [job] create_data_payload thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,092 | INFO     | [payload] validate_pre thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,123 | INFO     | all job control threads have been joined
[2025-07-21 11:30:12] 2025-07-21 15:29:57,167 | INFO     | [job] job monitor thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,309 | INFO     | [data] copytool_in thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,476 | INFO     | [payload] execute_payloads thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,601 | INFO     | [payload] control thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:57,708 | INFO     | [data] copytool_out thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:58,129 | INFO     | [job] control thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:29:58,185 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-21 11:30:12] 2025-07-21 15:30:02,189 | INFO     | [data] queue_monitor thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:30:06,030 | INFO     | job.realtimelogging is not enabled
[2025-07-21 11:30:12] 2025-07-21 15:30:07,036 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-21 11:30:12] 2025-07-21 15:30:07,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042497857344)>', '<ExcThread(monitor, started 140041670080256)>']
[2025-07-21 11:30:12] 2025-07-21 15:30:07,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-21 11:30:12] 2025-07-21 15:30:07,766 | INFO     | [monitor] control thread has ended
[2025-07-21 11:30:12] 2025-07-21 15:30:12,311 | INFO     | all workflow threads have been joined
[2025-07-21 11:30:12] 2025-07-21 15:30:12,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-21 11:30:12] 2025-07-21 15:30:12,312 | INFO     | traces error code: 0
[2025-07-21 11:30:12] 2025-07-21 15:30:12,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-21 11:30:12] 2025-07-21 15:30:12,420 [wrapper] ==== pilot stdout END ====
[2025-07-21 11:30:12] 2025-07-21 15:30:12,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-21 11:30:12] 2025-07-21 15:30:12,429 [wrapper] pilotpid: 29850
[2025-07-21 11:30:12] 2025-07-21 15:30:12,434 [wrapper] Pilot exit status: 0
[2025-07-21 11:30:12] 2025-07-21 15:30:12,451 [wrapper] pandaids: 6741376788
[2025-07-21 11:30:12] 2025-07-21 15:30:12,498 [wrapper] cleanup supervisor_pilot 32200 29851
[2025-07-21 11:30:12] 2025-07-21 15:30:12,503 [wrapper] Test setup, not cleaning
[2025-07-21 11:30:12] 2025-07-21 15:30:12,507 [wrapper] apfmon messages muted
[2025-07-21 11:30:12] 2025-07-21 15:30:12,512 [wrapper] ==== wrapper stdout END ====
[2025-07-21 11:30:12] 2025-07-21 15:30:12,516 [wrapper] ==== wrapper stderr END ====
[2025-07-21 11:30:12]  *** Error codes and diagnostics ***
[2025-07-21 11:30:12]     "exeErrorCode": 0,
[2025-07-21 11:30:12]     "exeErrorDiag": "",
[2025-07-21 11:30:12]     "pilotErrorCode": 0,
[2025-07-21 11:30:12]     "pilotErrorDiag": "",
[2025-07-21 11:30:12]  *** Listing of results directory ***
[2025-07-21 11:30:12] total 523312
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas    530466 Jul 21 07:46 pilot3.tar.gz
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas      5112 Jul 21 07:50 queuedata.json
[2025-07-21 11:30:12] -rwx------ 1 boincer umatlas     36292 Jul 21 07:50 runpilot2-wrapper.sh
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas       100 Jul 21 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-21 11:30:12] -rwxr-xr-x 1 boincer umatlas      7986 Jul 21 08:31 run_atlas
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas       105 Jul 21 08:31 job.xml
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas 305922326 Jul 21 08:31 EVNT.45668735._000039.pool.root.1
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 21 08:31 start_atlas.sh
[2025-07-21 11:30:12] drwxrwx--x 2 boincer umatlas      4096 Jul 21 08:31 shared
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas    542879 Jul 21 08:31 input.tar.gz
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas         0 Jul 21 08:31 boinc_lockfile
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas      2513 Jul 21 08:31 pandaJob.out
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas    977258 Jul 21 08:32 agis_schedconf.cvmfs.json
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas   1593055 Jul 21 08:32 agis_ddmendpoints.agis.ALL.json
[2025-07-21 11:30:12] drwx------ 4 boincer umatlas      4096 Jul 21 08:32 pilot3
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas      5905 Jul 21 11:27 init_data.xml
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas 223445147 Jul 21 11:29 HITS.45668738._000978.pool.root.1
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas       531 Jul 21 11:29 boinc_task_state.xml
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas        95 Jul 21 11:29 pilot_heartbeat.json
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas      1050 Jul 21 11:29 memory_monitor_summary.json
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas    357033 Jul 21 11:29 log.45668738._000978.job.log.tgz.1
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas      7846 Jul 21 11:29 heartbeat.json
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas      8192 Jul 21 11:30 boinc_mmap_file
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas        28 Jul 21 11:30 wrapper_checkpoint.txt
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas      4738 Jul 21 11:30 pilotlog.txt
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas    956019 Jul 21 11:30 log.45668738._000978.job.log.1
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas       357 Jul 21 11:30 output.list
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas       620 Jul 21 11:30 runtime_log
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas   1331200 Jul 21 11:30 result.tar.gz
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas      8661 Jul 21 11:30 runtime_log.err
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas       663 Jul 21 11:30 QLBNDmDD4x7n9Rq4apOajLDm4fhM0noT9bVof3QYDmItsKDmlN2NJn.diag
[2025-07-21 11:30:12] -rw-r--r-- 1 boincer umatlas     20928 Jul 21 11:30 stderr.txt
[2025-07-21 11:30:12] HITS file was successfully produced:
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas 223445147 Jul 21 11:29 shared/HITS.pool.root.1
[2025-07-21 11:30:12]  *** Contents of shared directory: ***
[2025-07-21 11:30:12] total 518820
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas 305922326 Jul 21 08:31 ATLAS.root_0
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas     15095 Jul 21 08:31 start_atlas.sh
[2025-07-21 11:30:12] -rw-r--r-- 2 boincer umatlas    542879 Jul 21 08:31 input.tar.gz
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas 223445147 Jul 21 11:29 HITS.pool.root.1
[2025-07-21 11:30:12] -rw------- 1 boincer umatlas   1331200 Jul 21 11:30 result.tar.gz
11:30:13 (26114): run_atlas exited; CPU time 78911.049719
11:30:13 (26114): called boinc_finish(0)

</stderr_txt>
]]>

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