Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:13:10 (1278): wrapper (7.7.26015): starting
14:13:10 (1278): wrapper: running run_atlas (--nthreads 8)
[2025-07-20 14:13:10] Arguments: --nthreads 8
[2025-07-20 14:13:10] Threads: 8
[2025-07-20 14:13:10] Checking for CVMFS
[2025-07-20 14:13:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-20 14:13:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-20 14:13:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-20 14:13:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-20 14:13:10] 2.11.2.0 2810 102267 84820 148551 3 1 11120168 20275201 1 130560 0 24549608 99.957 9700166 10580 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-20 14:13:10] CVMFS is ok
[2025-07-20 14:13:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-20 14:13:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-20 14:13:10] Further information can be found at the LHC@home message board.
[2025-07-20 14:13:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-20 14:13:10] Checking for apptainer binary...
[2025-07-20 14:13:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-20 14:13:10] Running /usr/bin/apptainer --version
[2025-07-20 14:13:10] apptainer version 1.3.2-1.el7
[2025-07-20 14:13:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-20 14:13:12] c-204-37.aglt2.org
[2025-07-20 14:13:12] apptainer works
[2025-07-20 14:13:12] Set ATHENA_PROC_NUMBER=8
[2025-07-20 14:13:12] Set ATHENA_CORE_NUMBER=8
[2025-07-20 14:13:12] Starting ATLAS job with PandaID=6740162127
[2025-07-20 14:13:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 17:13:30]  *** The last 200 lines of the pilot log: ***
[2025-07-20 17:13:30] 2025-07-20 21:13:17,241 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 17:13:30] 2025-07-20 21:13:17,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 17:13:30] 2025-07-20 21:13:17,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 17:13:30] 2025-07-20 21:13:17,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 17:13:30] 2025-07-20 21:13:17,245 | INFO     | fitting pss+swap vs Time
[2025-07-20 17:13:30] 2025-07-20 21:13:17,245 | INFO     | sum of square deviations: 1719429448.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,246 | INFO     | sum of deviations: 14372678175.000002
[2025-07-20 17:13:30] 2025-07-20 21:13:17,246 | INFO     | mean x: 1753040613.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,246 | INFO     | mean y: 2494253.649717514
[2025-07-20 17:13:30] 2025-07-20 21:13:17,246 | INFO     | -- intersect: -14651139012.699764
[2025-07-20 17:13:30] 2025-07-20 21:13:17,246 | INFO     | intersect: -14651139012.699764
[2025-07-20 17:13:30] 2025-07-20 21:13:17,247 | INFO     | chi2: 2.6036105917293044
[2025-07-20 17:13:30] 2025-07-20 21:13:17,247 | INFO     | sum of square deviations: 1577789583.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,248 | INFO     | sum of deviations: 27293968039.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,248 | INFO     | mean x: 1753040460.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,248 | INFO     | mean y: 2507836.418604651
[2025-07-20 17:13:30] 2025-07-20 21:13:17,249 | INFO     | -- intersect: -30323101367.42974
[2025-07-20 17:13:30] 2025-07-20 21:13:17,249 | INFO     | intersect: -30323101367.42974
[2025-07-20 17:13:30] 2025-07-20 21:13:17,249 | INFO     | chi2: 1.6130796622891226
[2025-07-20 17:13:30] 2025-07-20 21:13:17,249 | INFO     | current chi2=1.6130796622891226 (change=38.044511440640456 %)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,249 | INFO     | sum of square deviations: 1444149868.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,250 | INFO     | sum of deviations: 26614989239.000008
[2025-07-20 17:13:30] 2025-07-20 21:13:17,250 | INFO     | mean x: 1753040308.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | mean y: 2507061.401197605
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | -- intersect: -32305184797.178993
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | intersect: -32305184797.178993
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | chi2: 1.6139216657442266
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | current chi2=1.6139216657442266 (change=-0.052198504189749834 %)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,251 | INFO     | right removable region: 166
[2025-07-20 17:13:30] 2025-07-20 21:13:17,252 | INFO     | sum of square deviations: 1577789583.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | sum of deviations: -14857846951.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | mean x: 1753040765.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | mean y: 2525392.25
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | -- intersect: 16510690786.532108
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | intersect: 16510690786.532108
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | chi2: 1.118297629923214
[2025-07-20 17:13:30] 2025-07-20 21:13:17,253 | INFO     | current chi2=1.118297629923214 (change=57.0481993937332 %)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,254 | INFO     | sum of square deviations: 1444149868.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | sum of deviations: -21958862533.00002
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | mean x: 1753040918.0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | mean y: 2533456.628742515
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | -- intersect: 26658204994.65097
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | intersect: 26658204994.65097
[2025-07-20 17:13:30] 2025-07-20 21:13:17,255 | INFO     | chi2: 1.0376987387110836
[2025-07-20 17:13:30] 2025-07-20 21:13:17,256 | INFO     | current chi2=1.0376987387110836 (change=7.207284452321021 %)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,256 | INFO     | left removable region: 20
[2025-07-20 17:13:30] 2025-07-20 21:13:17,256 | INFO     | sum of square deviations: 964976232.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | sum of deviations: -8213367966.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | mean x: 1753040887.5
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | mean y: 2549514.6369863013
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | -- intersect: 14923507549.069435
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | intersect: 14923507549.069435
[2025-07-20 17:13:30] 2025-07-20 21:13:17,257 | INFO     | chi2: 0.011104244215379127
[2025-07-20 17:13:30] 2025-07-20 21:13:17,258 | INFO     | -- intersect: 14923507549.069435
[2025-07-20 17:13:30] 2025-07-20 21:13:17,258 | INFO     | current memory leak: -8.51 B/s (using 146 data points, chi2=0.01)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,258 | INFO     | could have reported an average CPU frequency of 2019 MHz (9 samples)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,258 | INFO     | ..............................
[2025-07-20 17:13:30] 2025-07-20 21:13:17,258 | INFO     | . Timing measurements:
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . get job = 0 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . initial setup = 2 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . payload setup = 12 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . stage-in = 0 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . payload execution = 10741 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . stage-out = 0 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | . log creation = 0 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,259 | INFO     | ..............................
[2025-07-20 17:13:30] 2025-07-20 21:13:17,801 | INFO     | 
[2025-07-20 17:13:30] 2025-07-20 21:13:17,801 | INFO     | job summary report
[2025-07-20 17:13:30] 2025-07-20 21:13:17,801 | INFO     | --------------------------------------------------
[2025-07-20 17:13:30] 2025-07-20 21:13:17,802 | INFO     | PanDA job id: 6740162127
[2025-07-20 17:13:30] 2025-07-20 21:13:17,802 | INFO     | task id: 45668889
[2025-07-20 17:13:30] 2025-07-20 21:13:17,802 | INFO     | errors: (none)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,802 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 17:13:30] 2025-07-20 21:13:17,802 | INFO     | pilot state: finished 
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | transexitcode: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | exeerrorcode: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | exeerrordiag: 
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | exitcode: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | exitmsg: OK
[2025-07-20 17:13:30] 2025-07-20 21:13:17,803 | INFO     | cpuconsumptiontime: 80176 s
[2025-07-20 17:13:30] 2025-07-20 21:13:17,804 | INFO     | nevents: 400
[2025-07-20 17:13:30] 2025-07-20 21:13:17,804 | INFO     | neventsw: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,804 | INFO     | pid: 12307
[2025-07-20 17:13:30] 2025-07-20 21:13:17,804 | INFO     | pgrp: 12307
[2025-07-20 17:13:30] 2025-07-20 21:13:17,804 | INFO     | corecount: 8
[2025-07-20 17:13:30] 2025-07-20 21:13:17,805 | INFO     | event service: False
[2025-07-20 17:13:30] 2025-07-20 21:13:17,805 | INFO     | sizes: {0: 2397430, 6: 2397692, 11: 2397720, 10757: 2426742, 10758: 2435740, 10761: 2435796, 10769: 2436182}
[2025-07-20 17:13:30] 2025-07-20 21:13:17,805 | INFO     | --------------------------------------------------
[2025-07-20 17:13:30] 2025-07-20 21:13:17,805 | INFO     | 
[2025-07-20 17:13:30] 2025-07-20 21:13:17,805 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-20 17:13:30] 2025-07-20 21:13:17,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 17:13:30] 2025-07-20 21:13:17,838 | INFO     | job 6740162127 has completed (purged errors)
[2025-07-20 17:13:30] 2025-07-20 21:13:17,838 | INFO     | overall cleanup function is called
[2025-07-20 17:13:30] 2025-07-20 21:13:18,846 | INFO     | --- collectZombieJob: --- 10, [12307]
[2025-07-20 17:13:30] 2025-07-20 21:13:18,846 | INFO     | zombie collector waiting for pid 12307
[2025-07-20 17:13:30] 2025-07-20 21:13:18,851 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 17:13:30] 2025-07-20 21:13:18,852 | INFO     | collected zombie processes
[2025-07-20 17:13:30] 2025-07-20 21:13:18,852 | INFO     | will attempt to kill all subprocesses of pid=12307
[2025-07-20 17:13:30] 2025-07-20 21:13:18,942 | INFO     | process IDs to be killed: [12307] (in reverse order)
[2025-07-20 17:13:30] 2025-07-20 21:13:19,002 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 17:13:30] 2025-07-20 21:13:19,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 17:13:30] 2025-07-20 21:13:19,007 | INFO     | did not find any defunct processes belonging to 12307
[2025-07-20 17:13:30] 2025-07-20 21:13:19,011 | INFO     | did not find any defunct processes belonging to 12307
[2025-07-20 17:13:30] 2025-07-20 21:13:19,011 | INFO     | ready for new job
[2025-07-20 17:13:30] 2025-07-20 21:13:19,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 17:13:30] 2025-07-20 21:13:19,013 | INFO     | ***************************************
[2025-07-20 17:13:30] 2025-07-20 21:13:19,013 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 17:13:30] 2025-07-20 21:13:19,013 | INFO     | ***************************************
[2025-07-20 17:13:30] 2025-07-20 21:13:19,014 | INFO     | 
[2025-07-20 17:13:30] 2025-07-20 21:13:19,014 | INFO     | architecture information:
[2025-07-20 17:13:30] 2025-07-20 21:13:19,015 | INFO     | executing command: cat /etc/os-release
[2025-07-20 17:13:30] 2025-07-20 21:13:19,033 | INFO     | cat /etc/os-release:
[2025-07-20 17:13:30] NAME="CentOS Linux"
[2025-07-20 17:13:30] VERSION="7 (Core)"
[2025-07-20 17:13:30] ID="centos"
[2025-07-20 17:13:30] ID_LIKE="rhel fedora"
[2025-07-20 17:13:30] VERSION_ID="7"
[2025-07-20 17:13:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 17:13:30] ANSI_COLOR="0;31"
[2025-07-20 17:13:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 17:13:30] HOME_URL="https://www.centos.org/"
[2025-07-20 17:13:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 17:13:30] 
[2025-07-20 17:13:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 17:13:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 17:13:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 17:13:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 17:13:30] 
[2025-07-20 17:13:30] 2025-07-20 21:13:19,033 | INFO     | ***************************************
[2025-07-20 17:13:30] 2025-07-20 21:13:19,534 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-20 17:13:30] 2025-07-20 21:13:19,554 | INFO     | sufficient remaining disk space (18372100096 B)
[2025-07-20 17:13:30] 2025-07-20 21:13:19,554 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 17:13:30] 2025-07-20 21:13:19,554 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 17:13:30] 2025-07-20 21:13:19,555 | INFO     | update_server=False
[2025-07-20 17:13:30] 2025-07-20 21:13:19,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 17:13:30] 2025-07-20 21:13:19,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 17:13:30] 2025-07-20 21:13:19,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 17:13:30] 2025-07-20 21:13:19,556 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-20 17:13:30] 2025-07-20 21:13:19,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 17:13:30] 2025-07-20 21:13:19,557 | INFO     | aborting loop
[2025-07-20 17:13:30] 2025-07-20 21:13:19,557 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 17:13:30] 2025-07-20 21:13:19,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 17:13:30] 2025-07-20 21:13:19,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 17:13:30] 2025-07-20 21:13:20,281 | INFO     | all data control threads have been joined
[2025-07-20 17:13:30] 2025-07-20 21:13:20,560 | INFO     | [job] retrieve thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,563 | INFO     | [job] job monitor thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,588 | INFO     | [job] validate thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,639 | INFO     | [data] copytool_in thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,645 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,709 | INFO     | all job control threads have been joined
[2025-07-20 17:13:30] 2025-07-20 21:13:20,755 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,839 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:20,883 | INFO     | all payload control threads have been joined
[2025-07-20 17:13:30] 2025-07-20 21:13:21,287 | INFO     | [data] control thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,561 | INFO     | [data] copytool_out thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,714 | INFO     | [job] control thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,784 | INFO     | [payload] failed_post thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,888 | INFO     | [payload] control thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:21,921 | INFO     | [payload] validate_post thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:22,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 17:13:30] 2025-07-20 21:13:23,369 | INFO     | [job] queue monitor thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:23,559 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 17:13:30] 2025-07-20 21:13:25,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781363799872)>', '<ExcThread(monitor, started 139780666922752)>']
[2025-07-20 17:13:30] 2025-07-20 21:13:25,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 17:13:30] 2025-07-20 21:13:25,585 | INFO     | [monitor] control thread has ended
[2025-07-20 17:13:30] 2025-07-20 21:13:28,520 [wrapper] supervise_pilot (15 min periods counter: 13)
[2025-07-20 17:13:30] 2025-07-20 21:13:30,570 | INFO     | all workflow threads have been joined
[2025-07-20 17:13:30] 2025-07-20 21:13:30,570 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 17:13:30] 2025-07-20 21:13:30,577 | INFO     | traces error code: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:30,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 17:13:30] 2025-07-20 21:13:30,688 [wrapper] ==== pilot stdout END ====
[2025-07-20 17:13:30] 2025-07-20 21:13:30,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 17:13:30] 2025-07-20 21:13:30,698 [wrapper] pilotpid: 5410
[2025-07-20 17:13:30] 2025-07-20 21:13:30,702 [wrapper] Pilot exit status: 0
[2025-07-20 17:13:30] 2025-07-20 21:13:30,721 [wrapper] pandaids: 6740162127
[2025-07-20 17:13:30] 2025-07-20 21:13:30,768 [wrapper] cleanup supervisor_pilot 10933 5411
[2025-07-20 17:13:30] 2025-07-20 21:13:30,773 [wrapper] Test setup, not cleaning
[2025-07-20 17:13:30] 2025-07-20 21:13:30,777 [wrapper] apfmon messages muted
[2025-07-20 17:13:30] 2025-07-20 21:13:30,782 [wrapper] ==== wrapper stdout END ====
[2025-07-20 17:13:30] 2025-07-20 21:13:30,787 [wrapper] ==== wrapper stderr END ====
[2025-07-20 17:13:30]  *** Error codes and diagnostics ***
[2025-07-20 17:13:30]     "exeErrorCode": 0,
[2025-07-20 17:13:30]     "exeErrorDiag": "",
[2025-07-20 17:13:30]     "pilotErrorCode": 0,
[2025-07-20 17:13:30]     "pilotErrorDiag": "",
[2025-07-20 17:13:30]  *** Listing of results directory ***
[2025-07-20 17:13:30] total 524476
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas    530466 Jul 20 07:31 pilot3.tar.gz
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas      5112 Jul 20 07:34 queuedata.json
[2025-07-20 17:13:30] -rwx------ 1 boincer umatlas     36292 Jul 20 07:35 runpilot2-wrapper.sh
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas       100 Jul 20 14:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 17:13:30] -rwxr-xr-x 1 boincer umatlas      7986 Jul 20 14:13 run_atlas
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas       105 Jul 20 14:13 job.xml
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas 305436351 Jul 20 14:13 EVNT.45668886._000028.pool.root.1
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas     15095 Jul 20 14:13 start_atlas.sh
[2025-07-20 17:13:30] drwxrwx--x 2 boincer umatlas      4096 Jul 20 14:13 shared
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas    542885 Jul 20 14:13 input.tar.gz
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas         0 Jul 20 14:13 boinc_lockfile
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas      2537 Jul 20 14:13 pandaJob.out
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas    978422 Jul 20 14:13 agis_schedconf.cvmfs.json
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas   1593055 Jul 20 14:13 agis_ddmendpoints.agis.ALL.json
[2025-07-20 17:13:30] drwx------ 4 boincer umatlas      4096 Jul 20 14:13 pilot3
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas      5905 Jul 20 17:02 init_data.xml
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas 225111457 Jul 20 17:12 HITS.45668889._000687.pool.root.1
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas      8192 Jul 20 17:12 boinc_mmap_file
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas        28 Jul 20 17:12 wrapper_checkpoint.txt
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas       530 Jul 20 17:12 boinc_task_state.xml
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas      1062 Jul 20 17:13 memory_monitor_summary.json
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas        95 Jul 20 17:13 pilot_heartbeat.json
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas    356125 Jul 20 17:13 log.45668889._000687.job.log.tgz.1
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas      7843 Jul 20 17:13 heartbeat.json
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas      4480 Jul 20 17:13 pilotlog.txt
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas    966338 Jul 20 17:13 log.45668889._000687.job.log.1
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas       357 Jul 20 17:13 output.list
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas       620 Jul 20 17:13 runtime_log
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas   1341440 Jul 20 17:13 result.tar.gz
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas      8661 Jul 20 17:13 runtime_log.err
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas       663 Jul 20 17:13 PVKKDmbVhx7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFiFLDmYYlpKo.diag
[2025-07-20 17:13:30] -rw-r--r-- 1 boincer umatlas     20787 Jul 20 17:13 stderr.txt
[2025-07-20 17:13:30] HITS file was successfully produced:
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas 225111457 Jul 20 17:12 shared/HITS.pool.root.1
[2025-07-20 17:13:30]  *** Contents of shared directory: ***
[2025-07-20 17:13:30] total 519980
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas 305436351 Jul 20 14:13 ATLAS.root_0
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas     15095 Jul 20 14:13 start_atlas.sh
[2025-07-20 17:13:30] -rw-r--r-- 2 boincer umatlas    542885 Jul 20 14:13 input.tar.gz
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas 225111457 Jul 20 17:12 HITS.pool.root.1
[2025-07-20 17:13:30] -rw------- 1 boincer umatlas   1341440 Jul 20 17:13 result.tar.gz
17:13:32 (1278): run_atlas exited; CPU time 80114.530726
17:13:32 (1278): called boinc_finish(0)

</stderr_txt>
]]>

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