Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-20 14:03:02 (840516): Detected: vboxwrapper 26206
2025-07-20 14:03:02 (840516): Detected: BOINC client v8.2.5
2025-07-20 14:03:03 (840516): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-07-20 14:03:03 (840516): Successfully copied 'init_data.xml' to the shared directory.
2025-07-20 14:03:03 (840516): Create VM. (boinc_1149609f9a7abcad, slot#0)
2025-07-20 14:03:04 (840516): Setting Memory Size for VM. (4096MB)
2025-07-20 14:03:04 (840516): Setting CPU Count for VM. (1)
2025-07-20 14:03:04 (840516): Setting Chipset Options for VM.
2025-07-20 14:03:05 (840516): Setting Graphics Controller Options for VM.
2025-07-20 14:03:05 (840516): Setting Boot Options for VM.
2025-07-20 14:03:05 (840516): Setting Network Configuration for NAT.
2025-07-20 14:03:05 (840516): Enabling VM Network Access.
2025-07-20 14:03:06 (840516): Disabling USB Support for VM.
2025-07-20 14:03:06 (840516): Disabling COM Port Support for VM.
2025-07-20 14:03:06 (840516): Disabling LPT Port Support for VM.
2025-07-20 14:03:06 (840516): Disabling Audio Support for VM.
2025-07-20 14:03:07 (840516): Disabling Clipboard Support for VM.
2025-07-20 14:03:07 (840516): Disabling Drag and Drop Support for VM.
2025-07-20 14:03:07 (840516): Adding storage controller(s) to VM.
2025-07-20 14:03:07 (840516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-20 14:03:08 (840516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-20 14:03:08 (840516): forwarding host port 35047 to guest port 80
2025-07-20 14:03:08 (840516): Enabling remote desktop for VM.
2025-07-20 14:03:09 (840516): Enabling shared directory for VM.
2025-07-20 14:03:09 (840516): Starting VM using VBoxManage interface. (boinc_1149609f9a7abcad, slot#0)
2025-07-20 14:03:11 (840516): Successfully started VM. (PID = '840910')
2025-07-20 14:03:11 (840516): Reporting VM Process ID to BOINC.
2025-07-20 14:03:11 (840516): Guest Log: BIOS: VirtualBox 7.0.20
2025-07-20 14:03:11 (840516): Guest Log: CPUID EDX: 0x178bfbff
2025-07-20 14:03:11 (840516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-20 14:03:11 (840516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-20 14:03:11 (840516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-20 14:03:11 (840516): Detected: Web Application Enabled (http://localhost:35047)
2025-07-20 14:03:11 (840516): Detected: Remote Desktop Enabled (localhost:39151)
2025-07-20 14:03:11 (840516): Preference change detected
2025-07-20 14:03:11 (840516): Setting CPU throttle for VM. (100%)
2025-07-20 14:03:11 (840516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-20 14:03:13 (840516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-20 14:03:13 (840516): Guest Log: BIOS: Booting from Hard Disk...
2025-07-20 14:03:16 (840516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-20 14:03:16 (840516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-20 14:03:16 (840516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-20 14:03:21 (840516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-20 14:03:21 (840516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-20 14:03:34 (840516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000264 main     Log opened 2025-07-20T12:03:31.852597000Z
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000390 main     OS Product: Linux
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000419 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000443 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000465 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000466 main     Process ID: 1240
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.000466 main     Package type: LINUX_64BITS_GENERIC
2025-07-20 14:03:34 (840516): Guest Log: 00:00:00.003815 main     5.2.32 r132073 started. Verbose level = 0
2025-07-20 14:03:34 (840516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-20 14:03:34 (840516): Guest Log: [INFO] Mounting shared directory
2025-07-20 14:03:34 (840516): Guest Log: [INFO] Checking for init_data.xml
2025-07-20 14:03:36 (840516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-20 14:03:36 (840516): Guest Log: [INFO] Detected branch: prod
2025-07-20 14:03:36 (840516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-20 14:03:36 (840516): Guest Log: Copying input files
2025-07-20 14:03:39 (840516): Guest Log: Copied input files into RunAtlas.
2025-07-20 14:03:39 (840516): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-07-20 14:03:46 (840516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-20 14:03:46 (840516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-20 14:03:46 (840516): Guest Log: 2.6.3.0 1509 0 31544 148542 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-07-20 14:03:47 (840516): Guest Log: copied the webapp to /var/www
2025-07-20 14:03:47 (840516): Guest Log: core_number=1
2025-07-20 14:03:47 (840516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-20 14:03:47 (840516): Guest Log:  *** Starting ATLAS job. (PandaID=6740161277 taskID=45668738) ***
2025-07-20 15:42:11 (840516): Status Report: Elapsed Time: '6000.000000'
2025-07-20 15:42:11 (840516): Status Report: CPU Time: '5903.120000'
2025-07-20 17:21:12 (840516): Status Report: Elapsed Time: '12000.000000'
2025-07-20 17:21:12 (840516): Status Report: CPU Time: '11847.610000'
2025-07-20 19:00:12 (840516): Status Report: Elapsed Time: '18000.000000'
2025-07-20 19:00:12 (840516): Status Report: CPU Time: '17791.510000'
2025-07-20 20:39:12 (840516): Status Report: Elapsed Time: '24000.000000'
2025-07-20 20:39:12 (840516): Status Report: CPU Time: '23735.400000'
2025-07-20 22:18:12 (840516): Status Report: Elapsed Time: '30000.000000'
2025-07-20 22:18:12 (840516): Status Report: CPU Time: '29678.660000'
2025-07-20 23:57:13 (840516): Status Report: Elapsed Time: '36000.000000'
2025-07-20 23:57:13 (840516): Status Report: CPU Time: '35620.960000'
2025-07-21 01:36:13 (840516): Status Report: Elapsed Time: '42000.000000'
2025-07-21 01:36:13 (840516): Status Report: CPU Time: '41561.790000'
2025-07-21 03:15:13 (840516): Status Report: Elapsed Time: '48000.000000'
2025-07-21 03:15:13 (840516): Status Report: CPU Time: '47504.540000'
2025-07-21 04:54:14 (840516): Status Report: Elapsed Time: '54000.000000'
2025-07-21 04:54:14 (840516): Status Report: CPU Time: '53445.780000'
2025-07-21 06:33:14 (840516): Status Report: Elapsed Time: '60000.000000'
2025-07-21 06:33:14 (840516): Status Report: CPU Time: '59388.170000'
2025-07-21 08:12:14 (840516): Status Report: Elapsed Time: '66000.000000'
2025-07-21 08:12:14 (840516): Status Report: CPU Time: '65331.150000'
2025-07-21 09:51:15 (840516): Status Report: Elapsed Time: '72000.000000'
2025-07-21 09:51:15 (840516): Status Report: CPU Time: '71275.870000'
2025-07-21 09:58:29 (840516): Guest Log:  *** Job finished ***
2025-07-21 09:58:29 (840516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:09,480 | INFO     | all workflow threads have been joined
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:09,481 | INFO     | end of generic workflow (traces error code: 0)
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:09,481 | INFO     | traces error code: 0
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:09,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,031 | INFO     | PID=5758 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,032 | INFO     | found 0 job(s) in 20 queues
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,032 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,032 | INFO     | [monitor] control thread has ended
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,141 [wrapper] ==== pilot stdout END ====
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,145 [wrapper] ==== wrapper stdout RESUME ====
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,150 [wrapper] pilotpid: 5758
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,155 [wrapper] Pilot exit status: 0
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,362 [wrapper] pandaids: 6740161277
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,394 [wrapper] cleanup supervisor_pilot  8336 5759
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,399 [wrapper] Test setup, not cleaning
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,403 [wrapper] apfmon messages muted
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,408 [wrapper] ==== wrapper stdout END ====
2025-07-21 09:58:29 (840516): Guest Log: 2025-07-21 07:58:29,413 [wrapper] ==== wrapper stderr END ====
2025-07-21 09:58:29 (840516): Guest Log:  *** Error codes and diagnostics ***
2025-07-21 09:58:29 (840516): Guest Log:     "exeErrorCode": 0,
2025-07-21 09:58:29 (840516): Guest Log:     "exeErrorDiag": "",
2025-07-21 09:58:29 (840516): Guest Log:     "pilotErrorCode": 0,
2025-07-21 09:58:29 (840516): Guest Log:     "pilotErrorDiag": "",
2025-07-21 09:58:29 (840516): Guest Log:  *** Listing of results directory ***
2025-07-21 09:58:29 (840516): Guest Log: total 242800
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 20 11:31 pilot3.tar.gz
2025-07-21 09:58:29 (840516): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 20 11:34 runpilot2-wrapper.sh
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 20 11:34 queuedata.json
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas      9749 Jul 20 12:03 init_data.xml
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas    542875 Jul 20 12:03 input.tar.gz
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 20 12:03 start_atlas.sh
2025-07-21 09:58:29 (840516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 20 12:03 EVNT.45668735._000026.pool.root.1 -> /data/./ATLAS.root_0
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas      2513 Jul 20 12:03 pandaJob.out
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas    978438 Jul 20 12:04 agis_schedconf.cvmfs.json
2025-07-21 09:58:29 (840516): Guest Log: drwx------. 4 atlas atlas      4096 Jul 20 12:04 pilot3
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas 230915974 Jul 21 07:57 HITS.45668738._000656.pool.root.1
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas        95 Jul 21 07:57 pilot_heartbeat.json
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas      1026 Jul 21 07:57 memory_monitor_summary.json
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas   1593055 Jul 21 07:57 agis_ddmendpoints.agis.ALL.json
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas    793746 Jul 21 07:57 log.45668738._000656.job.log.tgz.1
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas      7813 Jul 21 07:57 heartbeat.json
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas       744 Jul 21 07:58 pilotlog.txt
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas   6160253 Jul 21 07:58 log.45668738._000656.job.log.1
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas       357 Jul 21 07:58 output.list
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 21 07:58 runtime_log
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas   6973440 Jul 21 07:58 result.tar.gz
2025-07-21 09:58:29 (840516): Guest Log: -rw-r--r--. 1 atlas atlas      8473 Jul 21 07:58 runtime_log.err
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas       657 Jul 21 07:58 dovLDmIUhx7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7bFLDmQHtxSo.diag
2025-07-21 09:58:29 (840516): Guest Log: Looking for outputfile HITS.45668738._000656.pool.root.1
2025-07-21 09:58:29 (840516): Guest Log: HITS file was successfully produced
2025-07-21 09:58:29 (840516): Guest Log: -rw-------. 1 atlas atlas 230915974 Jul 21 07:57 /home/atlas/RunAtlas/HITS.45668738._000656.pool.root.1
2025-07-21 09:58:30 (840516): Guest Log: Successfully finished the ATLAS job!
2025-07-21 09:58:30 (840516): Guest Log: Copying the results back to the shared directory!
2025-07-21 09:58:30 (840516): Guest Log:  *** Contents of shared directory: ***
2025-07-21 09:58:30 (840516): Guest Log: total 310648
2025-07-21 09:58:30 (840516): Guest Log: -rw-r--r--. 1 root root 310547002 Jul 20 12:03 ATLAS.root_0
2025-07-21 09:58:30 (840516): Guest Log: -rw-r--r--. 1 root root      9749 Jul 20 12:03 init_data.xml
2025-07-21 09:58:30 (840516): Guest Log: -rw-r--r--. 1 root root    542875 Jul 20 12:03 input.tar.gz
2025-07-21 09:58:30 (840516): Guest Log: -rw-r--r--. 1 root root   6973440 Jul 21 07:58 result.tar.gz
2025-07-21 09:58:30 (840516): Guest Log: -rw-r--r--. 1 root root     15095 Jul 20 12:03 start_atlas.sh
2025-07-21 09:58:30 (840516): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-21 09:58:30 (840516): VM Completion File Detected.
2025-07-21 09:58:30 (840516): Powering off VM.
2025-07-21 09:58:31 (840516): Successfully stopped VM.
2025-07-21 09:58:31 (840516): Deregistering VM. (boinc_1149609f9a7abcad, slot#0)
2025-07-21 09:58:31 (840516): Removing network bandwidth throttle group from VM.
2025-07-21 09:58:31 (840516): Removing VM from VirtualBox.
09:58:37 (840516): called boinc_finish(0)

</stderr_txt>
]]>

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