Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:39:47 (3444717): wrapper (7.7.26015): starting
07:39:47 (3444717): wrapper: running run_atlas (--nthreads 12)
[2025-07-20 07:39:47] Arguments: --nthreads 12
[2025-07-20 07:39:47] Threads: 12
[2025-07-20 07:39:47] Checking for CVMFS
[2025-07-20 07:39:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-20 07:39:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-20 07:39:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-20 07:39:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-20 07:39:48] 2.13.0.0 1071838 8252 281436 148542 3 63 32178530 32935937 14877 16776704 0 29556451 99.480 39212071 7818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-20 07:39:48] CVMFS is ok
[2025-07-20 07:39:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-20 07:39:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-20 07:39:48] Further information can be found at the LHC@home message board.
[2025-07-20 07:39:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-20 07:39:48] Checking for apptainer binary...
[2025-07-20 07:39:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-20 07:39:48] Running /usr/bin/apptainer --version
[2025-07-20 07:39:48] apptainer version 1.4.1-1.el9
[2025-07-20 07:39:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-20 07:39:49] c-8-39.aglt2.org
[2025-07-20 07:39:49] apptainer works
[2025-07-20 07:39:49] Set ATHENA_PROC_NUMBER=12
[2025-07-20 07:39:49] Set ATHENA_CORE_NUMBER=12
[2025-07-20 07:39:49] Starting ATLAS job with PandaID=6740161754
[2025-07-20 07:39:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 16:07:46]  *** The last 200 lines of the pilot log: ***
[2025-07-20 16:07:46] 2025-07-20 20:07:09,956 | INFO     | .. there are 39 such processes running
[2025-07-20 16:07:46] 2025-07-20 20:07:10,453 | INFO     | monitor loop #1544: job 0:6740161754 is in state 'finished'
[2025-07-20 16:07:46] 2025-07-20 20:07:10,484 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,117 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-20 16:07:46] 2025-07-20 20:07:12,167 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2667.2729791666657
[2025-07-20 16:07:46] 2025-07-20 20:07:12,233 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6740161754/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,234 | INFO     | extracted standard info from prmon json
[2025-07-20 16:07:46] 2025-07-20 20:07:12,235 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 16:07:46] 2025-07-20 20:07:12,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 16:07:46] 2025-07-20 20:07:12,243 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 16:07:46] 2025-07-20 20:07:12,243 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 16:07:46] 2025-07-20 20:07:12,266 | INFO     | fitting pss+swap vs Time
[2025-07-20 16:07:46] 2025-07-20 20:07:12,273 | INFO     | sum of square deviations: 37836188232.95974
[2025-07-20 16:07:46] 2025-07-20 20:07:12,286 | INFO     | sum of deviations: 30961251807.560493
[2025-07-20 16:07:46] 2025-07-20 20:07:12,306 | INFO     | mean x: 1753026838.1008065
[2025-07-20 16:07:46] 2025-07-20 20:07:12,306 | INFO     | mean y: 2308138.3487903224
[2025-07-20 16:07:46] 2025-07-20 20:07:12,306 | INFO     | -- intersect: -1432189042.6481578
[2025-07-20 16:07:46] 2025-07-20 20:07:12,306 | INFO     | intersect: -1432189042.6481578
[2025-07-20 16:07:46] 2025-07-20 20:07:12,307 | INFO     | chi2: 2.7770365474439194
[2025-07-20 16:07:46] 2025-07-20 20:07:12,308 | INFO     | sum of square deviations: 36703495091.136375
[2025-07-20 16:07:46] 2025-07-20 20:07:12,334 | INFO     | sum of deviations: 61010889599.655945
[2025-07-20 16:07:46] 2025-07-20 20:07:12,334 | INFO     | mean x: 1753026685.6069245
[2025-07-20 16:07:46] 2025-07-20 20:07:12,335 | INFO     | mean y: 2312164.454175153
[2025-07-20 16:07:46] 2025-07-20 20:07:12,335 | INFO     | -- intersect: -2911680557.9076633
[2025-07-20 16:07:46] 2025-07-20 20:07:12,335 | INFO     | intersect: -2911680557.9076633
[2025-07-20 16:07:46] 2025-07-20 20:07:12,336 | INFO     | chi2: 2.5145107999120064
[2025-07-20 16:07:46] 2025-07-20 20:07:12,336 | INFO     | current chi2=2.5145107999120064 (change=9.453449497218564 %)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,336 | INFO     | right removable region: 490
[2025-07-20 16:07:46] 2025-07-20 20:07:12,337 | INFO     | sum of square deviations: 36703313311.13636
[2025-07-20 16:07:46] 2025-07-20 20:07:12,356 | INFO     | sum of deviations: -60439150462.25457
[2025-07-20 16:07:46] 2025-07-20 20:07:12,356 | INFO     | mean x: 1753026990.6069245
[2025-07-20 16:07:46] 2025-07-20 20:07:12,356 | INFO     | mean y: 2320409.957230143
[2025-07-20 16:07:46] 2025-07-20 20:07:12,356 | INFO     | -- intersect: 2889020614.6915503
[2025-07-20 16:07:46] 2025-07-20 20:07:12,357 | INFO     | intersect: 2889020614.6915503
[2025-07-20 16:07:46] 2025-07-20 20:07:12,358 | INFO     | chi2: 1.0048045039198124
[2025-07-20 16:07:46] 2025-07-20 20:07:12,358 | INFO     | current chi2=1.0048045039198124 (change=63.817382783648654 %)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,372 | INFO     | sum of square deviations: 35593276026.77541
[2025-07-20 16:07:46] 2025-07-20 20:07:12,384 | INFO     | sum of deviations: -87012491508.35596
[2025-07-20 16:07:46] 2025-07-20 20:07:12,384 | INFO     | mean x: 1753027143.1131687
[2025-07-20 16:07:46] 2025-07-20 20:07:12,384 | INFO     | mean y: 2324058.133744856
[2025-07-20 16:07:46] 2025-07-20 20:07:12,384 | INFO     | -- intersect: 4287831784.067875
[2025-07-20 16:07:46] 2025-07-20 20:07:12,390 | INFO     | intersect: 4287831784.067875
[2025-07-20 16:07:46] 2025-07-20 20:07:12,391 | INFO     | chi2: 0.8601151440295568
[2025-07-20 16:07:46] 2025-07-20 20:07:12,391 | INFO     | current chi2=0.8601151440295568 (change=14.399752322547549 %)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,391 | INFO     | left removable region: 20
[2025-07-20 16:07:46] 2025-07-20 20:07:12,392 | INFO     | sum of square deviations: 32192369372.563854
[2025-07-20 16:07:46] 2025-07-20 20:07:12,428 | INFO     | sum of deviations: -23272220258.712784
[2025-07-20 16:07:46] 2025-07-20 20:07:12,429 | INFO     | mean x: 1753027265.1170213
[2025-07-20 16:07:46] 2025-07-20 20:07:12,429 | INFO     | mean y: 2323803.9765957445
[2025-07-20 16:07:46] 2025-07-20 20:07:12,429 | INFO     | -- intersect: 1269606623.7401376
[2025-07-20 16:07:46] 2025-07-20 20:07:12,429 | INFO     | intersect: 1269606623.7401376
[2025-07-20 16:07:46] 2025-07-20 20:07:12,430 | INFO     | chi2: 0.5243610830973369
[2025-07-20 16:07:46] 2025-07-20 20:07:12,430 | INFO     | -- intersect: 1269606623.7401376
[2025-07-20 16:07:46] 2025-07-20 20:07:12,430 | INFO     | current memory leak: -0.72 B/s (using 470 data points, chi2=0.52)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,436 | INFO     | could have reported an average CPU frequency of 2630 MHz (20 samples)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,436 | INFO     | ..............................
[2025-07-20 16:07:46] 2025-07-20 20:07:12,436 | INFO     | . Timing measurements:
[2025-07-20 16:07:46] 2025-07-20 20:07:12,436 | INFO     | . get job = 0 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . initial setup = 5 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . payload setup = 31 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . stage-in = 0 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . payload execution = 30283 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . stage-out = 5 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | . log creation = 0 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,437 | INFO     | ..............................
[2025-07-20 16:07:46] 2025-07-20 20:07:12,769 | INFO     | 
[2025-07-20 16:07:46] 2025-07-20 20:07:12,769 | INFO     | job summary report
[2025-07-20 16:07:46] 2025-07-20 20:07:12,769 | INFO     | --------------------------------------------------
[2025-07-20 16:07:46] 2025-07-20 20:07:12,769 | INFO     | PanDA job id: 6740161754
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | task id: 45668889
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | errors: (none)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | pilot state: finished 
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | transexitcode: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | exeerrorcode: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:12,770 | INFO     | exeerrordiag: 
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | exitcode: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | exitmsg: OK
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | cpuconsumptiontime: 75921 s
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | nevents: 400
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | neventsw: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | pid: 3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:12,771 | INFO     | pgrp: 3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | corecount: 12
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | event service: False
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | sizes: {0: 2397259, 1: 2397458, 12: 2397458, 19: 2397748, 23: 2397776, 30318: 2435421, 30319: 2435548, 30324: 2444602, 30327: 2444658, 30354: 2444852}
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | --------------------------------------------------
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | 
[2025-07-20 16:07:46] 2025-07-20 20:07:12,772 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-20 16:07:46] 2025-07-20 20:07:12,946 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 16:07:46] 2025-07-20 20:07:12,949 | INFO     | job 6740161754 has completed (purged errors)
[2025-07-20 16:07:46] 2025-07-20 20:07:12,949 | INFO     | overall cleanup function is called
[2025-07-20 16:07:46] 2025-07-20 20:07:13,971 | INFO     | --- collectZombieJob: --- 10, [3457760]
[2025-07-20 16:07:46] 2025-07-20 20:07:13,971 | INFO     | zombie collector waiting for pid 3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:13,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 16:07:46] 2025-07-20 20:07:13,971 | INFO     | collected zombie processes
[2025-07-20 16:07:46] 2025-07-20 20:07:13,971 | INFO     | will attempt to kill all subprocesses of pid=3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:15,595 | INFO     | process IDs to be killed: [3457760] (in reverse order)
[2025-07-20 16:07:46] 2025-07-20 20:07:15,864 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 16:07:46] 2025-07-20 20:07:15,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 16:07:46] 2025-07-20 20:07:15,912 | INFO     | did not find any defunct processes belonging to 3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:15,966 | INFO     | did not find any defunct processes belonging to 3457760
[2025-07-20 16:07:46] 2025-07-20 20:07:15,966 | INFO     | ready for new job
[2025-07-20 16:07:46] 2025-07-20 20:07:15,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 16:07:46] 2025-07-20 20:07:15,973 | INFO     | ***************************************
[2025-07-20 16:07:46] 2025-07-20 20:07:15,973 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 16:07:46] 2025-07-20 20:07:15,973 | INFO     | ***************************************
[2025-07-20 16:07:46] 2025-07-20 20:07:15,973 | INFO     | 
[2025-07-20 16:07:46] 2025-07-20 20:07:15,989 | INFO     | architecture information:
[2025-07-20 16:07:46] 2025-07-20 20:07:15,990 | INFO     | executing command: cat /etc/os-release
[2025-07-20 16:07:46] 2025-07-20 20:07:16,013 | INFO     | cat /etc/os-release:
[2025-07-20 16:07:46] NAME="CentOS Linux"
[2025-07-20 16:07:46] VERSION="7 (Core)"
[2025-07-20 16:07:46] ID="centos"
[2025-07-20 16:07:46] ID_LIKE="rhel fedora"
[2025-07-20 16:07:46] VERSION_ID="7"
[2025-07-20 16:07:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 16:07:46] ANSI_COLOR="0;31"
[2025-07-20 16:07:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 16:07:46] HOME_URL="https://www.centos.org/"
[2025-07-20 16:07:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 16:07:46] 
[2025-07-20 16:07:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 16:07:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 16:07:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 16:07:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 16:07:46] 
[2025-07-20 16:07:46] 2025-07-20 20:07:16,013 | INFO     | ***************************************
[2025-07-20 16:07:46] 2025-07-20 20:07:16,517 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-20 16:07:46] 2025-07-20 20:07:16,629 | INFO     | sufficient remaining disk space (76294389760 B)
[2025-07-20 16:07:46] 2025-07-20 20:07:16,629 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 16:07:46] 2025-07-20 20:07:16,630 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 16:07:46] 2025-07-20 20:07:16,630 | INFO     | update_server=False
[2025-07-20 16:07:46] 2025-07-20 20:07:16,630 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 16:07:46] 2025-07-20 20:07:16,630 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 16:07:46] 2025-07-20 20:07:16,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 16:07:46] 2025-07-20 20:07:16,631 | INFO     | aborting loop
[2025-07-20 16:07:46] 2025-07-20 20:07:17,315 | INFO     | all payload control threads have been joined
[2025-07-20 16:07:46] 2025-07-20 20:07:17,560 | INFO     | all data control threads have been joined
[2025-07-20 16:07:46] 2025-07-20 20:07:17,637 | INFO     | [job] retrieve thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:17,641 | INFO     | [job] job monitor thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:17,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 16:07:46] 2025-07-20 20:07:17,792 | INFO     | all job control threads have been joined
[2025-07-20 16:07:46] 2025-07-20 20:07:18,002 | INFO     | [data] copytool_in thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,011 | INFO     | [job] validate thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,022 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,321 | INFO     | [payload] control thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,566 | INFO     | [data] control thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,639 | INFO     | [data] copytool_out thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,704 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,795 | INFO     | [job] queue monitor thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,798 | INFO     | [job] control thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:18,831 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:19,108 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:19,127 | INFO     | [payload] validate_post thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:19,161 | INFO     | [payload] failed_post thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:19,202 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 16:07:46] 2025-07-20 20:07:23,211 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 16:07:46] 2025-07-20 20:07:24,627 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410098247488)>', '<ExcThread(monitor, started 140409384724224)>']
[2025-07-20 16:07:46] 2025-07-20 20:07:29,653 | INFO     | all workflow threads have been joined
[2025-07-20 16:07:46] 2025-07-20 20:07:29,653 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 16:07:46] 2025-07-20 20:07:29,653 | INFO     | traces error code: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:29,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 16:07:46] 2025-07-20 20:07:43,058 | INFO     | 30407s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-20 16:07:46] 2025-07-20 20:07:45,190 | INFO     | PID=3449218 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-20 16:07:46] 2025-07-20 20:07:45,190 | INFO     | .. there are 39 such processes running
[2025-07-20 16:07:46] 2025-07-20 20:07:45,192 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 16:07:46] 2025-07-20 20:07:45,192 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 16:07:46] 2025-07-20 20:07:45,192 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 16:07:46] 2025-07-20 20:07:45,192 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 16:07:46] 2025-07-20 20:07:45,192 | INFO     | [monitor] control thread has ended
[2025-07-20 16:07:46] 2025-07-20 20:07:45,448 [wrapper] ==== pilot stdout END ====
[2025-07-20 16:07:46] 2025-07-20 20:07:45,481 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 16:07:46] 2025-07-20 20:07:45,492 [wrapper] pilotpid: 3449218
[2025-07-20 16:07:46] 2025-07-20 20:07:45,495 [wrapper] Pilot exit status: 0
[2025-07-20 16:07:46] 2025-07-20 20:07:45,656 [wrapper] pandaids: 6740161754
[2025-07-20 16:07:46] 2025-07-20 20:07:45,856 [wrapper] cleanup supervisor_pilot  766918 3449219
[2025-07-20 16:07:46] 2025-07-20 20:07:45,859 [wrapper] Test setup, not cleaning
[2025-07-20 16:07:46] 2025-07-20 20:07:45,862 [wrapper] apfmon messages muted
[2025-07-20 16:07:46] 2025-07-20 20:07:45,865 [wrapper] ==== wrapper stdout END ====
[2025-07-20 16:07:46] 2025-07-20 20:07:45,869 [wrapper] ==== wrapper stderr END ====
[2025-07-20 16:07:46]  *** Error codes and diagnostics ***
[2025-07-20 16:07:46]     "exeErrorCode": 0,
[2025-07-20 16:07:46]     "exeErrorDiag": "",
[2025-07-20 16:07:46]     "pilotErrorCode": 0,
[2025-07-20 16:07:46]     "pilotErrorDiag": "",
[2025-07-20 16:07:46]  *** Listing of results directory ***
[2025-07-20 16:07:46] total 524596
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas      5112 Jul 20 07:34 queuedata.json
[2025-07-20 16:07:46] -rwx------. 1 boincer umatlas     36292 Jul 20 07:35 runpilot2-wrapper.sh
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas       100 Jul 20 07:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 16:07:46] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 20 07:39 run_atlas
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas       105 Jul 20 07:39 job.xml
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas 305671881 Jul 20 07:39 EVNT.45668886._000016.pool.root.1
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 20 07:39 start_atlas.sh
[2025-07-20 16:07:46] drwxrwx--x. 2 boincer umatlas      4096 Jul 20 07:39 shared
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas    564546 Jul 20 07:39 input.tar.gz
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas         0 Jul 20 07:39 boinc_lockfile
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas      2537 Jul 20 07:39 pandaJob.out
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas    978438 Jul 20 07:40 agis_schedconf.cvmfs.json
[2025-07-20 16:07:46] drwx------. 6 boincer umatlas      4096 Jul 20 07:40 pilot3
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas      6613 Jul 20 16:04 init_data.xml
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas 222128861 Jul 20 16:05 HITS.45668889._000390.pool.root.1
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas       531 Jul 20 16:05 boinc_task_state.xml
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas      1040 Jul 20 16:06 memory_monitor_summary.json
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas   1593055 Jul 20 16:06 agis_ddmendpoints.agis.ALL.json
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas    569802 Jul 20 16:06 log.45668889._000390.job.log.tgz.1
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas      7813 Jul 20 16:07 heartbeat.json
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas      8192 Jul 20 16:07 boinc_mmap_file
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas        28 Jul 20 16:07 wrapper_checkpoint.txt
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas        95 Jul 20 16:07 pilot_heartbeat.json
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas       939 Jul 20 16:07 pilotlog.txt
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas   2165691 Jul 20 16:07 log.45668889._000390.job.log.1
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas       357 Jul 20 16:07 output.list
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas       620 Jul 20 16:07 runtime_log
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas   2754560 Jul 20 16:07 result.tar.gz
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas      8653 Jul 20 16:07 runtime_log.err
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas       656 Jul 20 16:07 NXeMDmEVhx7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcdFLDm92UxRm.diag
[2025-07-20 16:07:46] -rw-r--r--. 1 boincer umatlas     21271 Jul 20 16:07 stderr.txt
[2025-07-20 16:07:46] HITS file was successfully produced:
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas 222128861 Jul 20 16:05 shared/HITS.pool.root.1
[2025-07-20 16:07:46]  *** Contents of shared directory: ***
[2025-07-20 16:07:46] total 518700
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas 305671881 Jul 20 07:39 ATLAS.root_0
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas     15095 Jul 20 07:39 start_atlas.sh
[2025-07-20 16:07:46] -rw-r--r--. 2 boincer umatlas    564546 Jul 20 07:39 input.tar.gz
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas 222128861 Jul 20 16:05 HITS.pool.root.1
[2025-07-20 16:07:46] -rw-------. 1 boincer umatlas   2754560 Jul 20 16:07 result.tar.gz
16:07:48 (3444717): run_atlas exited; CPU time 77385.021912
16:07:48 (3444717): called boinc_finish(0)

</stderr_txt>
]]>

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