Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:37:04 (570296): wrapper (7.7.26015): starting
01:37:04 (570296): wrapper: running run_atlas (--nthreads 8)
[2025-07-20 01:37:04] Arguments: --nthreads 8
[2025-07-20 01:37:04] Threads: 8
[2025-07-20 01:37:04] Checking for CVMFS
[2025-07-20 01:37:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-20 01:37:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-20 01:37:04] Running cvmfs_config stat atlas.cern.ch
[2025-07-20 01:37:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-20 01:37:05] 2.12.6.0 2935877 2578 261820 148531 2 316 21181856 40960000 25693 16776704 0 22642834 99.744 17721539 2499 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-20 01:37:05] CVMFS is ok
[2025-07-20 01:37:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-20 01:37:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-20 01:37:05] Further information can be found at the LHC@home message board.
[2025-07-20 01:37:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-20 01:37:05] Checking for apptainer binary...
[2025-07-20 01:37:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-20 01:37:05] Running /usr/bin/apptainer --version
[2025-07-20 01:37:05] apptainer version 1.4.1-1.el9
[2025-07-20 01:37:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-20 01:37:05] c7-2-17.aglt2.org
[2025-07-20 01:37:05] apptainer works
[2025-07-20 01:37:05] Set ATHENA_PROC_NUMBER=8
[2025-07-20 01:37:05] Set ATHENA_CORE_NUMBER=8
[2025-07-20 01:37:05] Starting ATLAS job with PandaID=6739828208
[2025-07-20 01:37:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 09:54:31]  *** The last 200 lines of the pilot log: ***
[2025-07-20 09:54:31] 2025-07-20 13:53:56,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,177 | INFO     | PID=579093 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-20 09:54:31] 2025-07-20 13:53:58,177 | INFO     | .. there are 49 such processes running
[2025-07-20 09:54:31] 2025-07-20 13:53:58,232 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-20 09:54:31] 2025-07-20 13:53:58,257 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3123.127760416666
[2025-07-20 09:54:31] 2025-07-20 13:53:58,280 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6739828208/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,280 | INFO     | extracted standard info from prmon json
[2025-07-20 09:54:31] 2025-07-20 13:53:58,281 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 09:54:31] 2025-07-20 13:53:58,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 09:54:31] 2025-07-20 13:53:58,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 09:54:31] 2025-07-20 13:53:58,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 09:54:31] 2025-07-20 13:53:58,294 | INFO     | fitting pss+swap vs Time
[2025-07-20 09:54:31] 2025-07-20 13:53:58,295 | INFO     | sum of square deviations: 36035954847.79515
[2025-07-20 09:54:31] 2025-07-20 13:53:58,300 | INFO     | sum of deviations: 120197288562.48352
[2025-07-20 09:54:31] 2025-07-20 13:53:58,301 | INFO     | mean x: 1753004745.5204918
[2025-07-20 09:54:31] 2025-07-20 13:53:58,301 | INFO     | mean y: 2099968.151639344
[2025-07-20 09:54:31] 2025-07-20 13:53:58,301 | INFO     | -- intersect: -5845016283.8996525
[2025-07-20 09:54:31] 2025-07-20 13:53:58,301 | INFO     | intersect: -5845016283.8996525
[2025-07-20 09:54:31] 2025-07-20 13:53:58,301 | INFO     | chi2: 2.6991608687521245
[2025-07-20 09:54:31] 2025-07-20 13:53:58,302 | INFO     | sum of square deviations: 34939602457.792854
[2025-07-20 09:54:31] 2025-07-20 13:53:58,307 | INFO     | sum of deviations: 142044948142.5321
[2025-07-20 09:54:31] 2025-07-20 13:53:58,308 | INFO     | mean x: 1753004593.020704
[2025-07-20 09:54:31] 2025-07-20 13:53:58,308 | INFO     | mean y: 2102976.84679089
[2025-07-20 09:54:31] 2025-07-20 13:53:58,308 | INFO     | -- intersect: -7124636567.772981
[2025-07-20 09:54:31] 2025-07-20 13:53:58,308 | INFO     | intersect: -7124636567.772981
[2025-07-20 09:54:31] 2025-07-20 13:53:58,309 | INFO     | chi2: 2.046963436851362
[2025-07-20 09:54:31] 2025-07-20 13:53:58,309 | INFO     | current chi2=2.046963436851362 (change=24.162970034545815 %)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,309 | INFO     | right removable region: 482
[2025-07-20 09:54:31] 2025-07-20 13:53:58,310 | INFO     | sum of square deviations: 34939596357.792854
[2025-07-20 09:54:31] 2025-07-20 13:53:58,316 | INFO     | sum of deviations: 41638580044.81779
[2025-07-20 09:54:31] 2025-07-20 13:53:58,317 | INFO     | mean x: 1753004898.020704
[2025-07-20 09:54:31] 2025-07-20 13:53:58,317 | INFO     | mean y: 2110860.4182194616
[2025-07-20 09:54:31] 2025-07-20 13:53:58,317 | INFO     | -- intersect: -2086998413.1327498
[2025-07-20 09:54:31] 2025-07-20 13:53:58,317 | INFO     | intersect: -2086998413.1327498
[2025-07-20 09:54:31] 2025-07-20 13:53:58,317 | INFO     | chi2: 1.008970153072576
[2025-07-20 09:54:31] 2025-07-20 13:53:58,318 | INFO     | current chi2=1.008970153072576 (change=62.61911749116892 %)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,318 | INFO     | sum of square deviations: 33865703405.290836
[2025-07-20 09:54:31] 2025-07-20 13:53:58,325 | INFO     | sum of deviations: 28250081682.156906
[2025-07-20 09:54:31] 2025-07-20 13:53:58,326 | INFO     | mean x: 1753005050.5209205
[2025-07-20 09:54:31] 2025-07-20 13:53:58,326 | INFO     | mean y: 2112752.7343096235
[2025-07-20 09:54:31] 2025-07-20 13:53:58,326 | INFO     | -- intersect: -1460208442.0681198
[2025-07-20 09:54:31] 2025-07-20 13:53:58,326 | INFO     | intersect: -1460208442.0681198
[2025-07-20 09:54:31] 2025-07-20 13:53:58,326 | INFO     | chi2: 0.9478974137059806
[2025-07-20 09:54:31] 2025-07-20 13:53:58,327 | INFO     | current chi2=0.9478974137059806 (change=6.052977799255327 %)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,327 | INFO     | left removable region: 20
[2025-07-20 09:54:31] 2025-07-20 13:53:58,327 | INFO     | sum of square deviations: 30577512801.283455
[2025-07-20 09:54:31] 2025-07-20 13:53:58,332 | INFO     | sum of deviations: 60614376224.09307
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | mean x: 1753005172.521645
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | mean y: 2114707.1406926406
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | -- intersect: -3472900273.330451
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | intersect: -3472900273.330451
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | chi2: 0.2608865163393884
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | -- intersect: -3472900273.330451
[2025-07-20 09:54:31] 2025-07-20 13:53:58,333 | INFO     | current memory leak: 1.98 B/s (using 462 data points, chi2=0.26)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | could have reported an average CPU frequency of 3174 MHz (20 samples)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | ..............................
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | . Timing measurements:
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | . get job = 0 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | . initial setup = 2 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,334 | INFO     | . payload setup = 15 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,335 | INFO     | . stage-in = 0 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,335 | INFO     | . payload execution = 29733 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,335 | INFO     | . stage-out = 2 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,335 | INFO     | . log creation = 0 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,335 | INFO     | ..............................
[2025-07-20 09:54:31] 2025-07-20 13:53:58,410 | INFO     | 
[2025-07-20 09:54:31] 2025-07-20 13:53:58,410 | INFO     | job summary report
[2025-07-20 09:54:31] 2025-07-20 13:53:58,410 | INFO     | --------------------------------------------------
[2025-07-20 09:54:31] 2025-07-20 13:53:58,410 | INFO     | PanDA job id: 6739828208
[2025-07-20 09:54:31] 2025-07-20 13:53:58,410 | INFO     | task id: 45668900
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | errors: (none)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | pilot state: finished 
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | transexitcode: 0
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | exeerrorcode: 0
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | exeerrordiag: 
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | exitcode: 0
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | exitmsg: OK
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | cpuconsumptiontime: 47679 s
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | nevents: 400
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | neventsw: 0
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | pid: 608999
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | pgrp: 608999
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | corecount: 8
[2025-07-20 09:54:31] 2025-07-20 13:53:58,411 | INFO     | event service: False
[2025-07-20 09:54:31] 2025-07-20 13:53:58,412 | INFO     | sizes: {0: 2397435, 9: 2397697, 11: 2397725, 29753: 2434658, 29757: 2443656, 29759: 2443740, 29773: 2444062}
[2025-07-20 09:54:31] 2025-07-20 13:53:58,412 | INFO     | --------------------------------------------------
[2025-07-20 09:54:31] 2025-07-20 13:53:58,412 | INFO     | 
[2025-07-20 09:54:31] 2025-07-20 13:53:58,412 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-20 09:54:31] 2025-07-20 13:53:58,438 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,439 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,440 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 09:54:31] 2025-07-20 13:53:58,440 | INFO     | job 6739828208 has completed (purged errors)
[2025-07-20 09:54:31] 2025-07-20 13:53:58,440 | INFO     | overall cleanup function is called
[2025-07-20 09:54:31] 2025-07-20 13:53:59,449 | INFO     | --- collectZombieJob: --- 10, [608999]
[2025-07-20 09:54:31] 2025-07-20 13:53:59,449 | INFO     | zombie collector waiting for pid 608999
[2025-07-20 09:54:31] 2025-07-20 13:53:59,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 09:54:31] 2025-07-20 13:53:59,449 | INFO     | collected zombie processes
[2025-07-20 09:54:31] 2025-07-20 13:53:59,449 | INFO     | will attempt to kill all subprocesses of pid=608999
[2025-07-20 09:54:31] 2025-07-20 13:54:00,062 | INFO     | process IDs to be killed: [608999] (in reverse order)
[2025-07-20 09:54:31] 2025-07-20 13:54:00,263 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 09:54:31] 2025-07-20 13:54:00,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 09:54:31] 2025-07-20 13:54:00,325 | INFO     | did not find any defunct processes belonging to 608999
[2025-07-20 09:54:31] 2025-07-20 13:54:00,365 | INFO     | did not find any defunct processes belonging to 608999
[2025-07-20 09:54:31] 2025-07-20 13:54:00,365 | INFO     | ready for new job
[2025-07-20 09:54:31] 2025-07-20 13:54:00,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 09:54:31] 2025-07-20 13:54:00,371 | INFO     | ***************************************
[2025-07-20 09:54:31] 2025-07-20 13:54:00,371 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 09:54:31] 2025-07-20 13:54:00,371 | INFO     | ***************************************
[2025-07-20 09:54:31] 2025-07-20 13:54:00,371 | INFO     | 
[2025-07-20 09:54:31] 2025-07-20 13:54:00,400 | INFO     | architecture information:
[2025-07-20 09:54:31] 2025-07-20 13:54:00,405 | INFO     | executing command: cat /etc/os-release
[2025-07-20 09:54:31] 2025-07-20 13:54:00,436 | INFO     | cat /etc/os-release:
[2025-07-20 09:54:31] NAME="CentOS Linux"
[2025-07-20 09:54:31] VERSION="7 (Core)"
[2025-07-20 09:54:31] ID="centos"
[2025-07-20 09:54:31] ID_LIKE="rhel fedora"
[2025-07-20 09:54:31] VERSION_ID="7"
[2025-07-20 09:54:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 09:54:31] ANSI_COLOR="0;31"
[2025-07-20 09:54:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 09:54:31] HOME_URL="https://www.centos.org/"
[2025-07-20 09:54:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 09:54:31] 
[2025-07-20 09:54:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 09:54:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 09:54:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 09:54:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 09:54:31] 
[2025-07-20 09:54:31] 2025-07-20 13:54:00,437 | INFO     | ***************************************
[2025-07-20 09:54:31] 2025-07-20 13:54:00,942 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-20 09:54:31] 2025-07-20 13:54:00,962 | INFO     | sufficient remaining disk space (129252720640 B)
[2025-07-20 09:54:31] 2025-07-20 13:54:00,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 09:54:31] 2025-07-20 13:54:00,962 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 09:54:31] 2025-07-20 13:54:00,962 | INFO     | update_server=False
[2025-07-20 09:54:31] 2025-07-20 13:54:00,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 09:54:31] 2025-07-20 13:54:00,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 09:54:31] 2025-07-20 13:54:00,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 09:54:31] 2025-07-20 13:54:00,963 | INFO     | aborting loop
[2025-07-20 09:54:31] 2025-07-20 13:54:01,076 | INFO     | all payload control threads have been joined
[2025-07-20 09:54:31] 2025-07-20 13:54:01,365 | INFO     | all data control threads have been joined
[2025-07-20 09:54:31] 2025-07-20 13:54:01,855 | INFO     | all job control threads have been joined
[2025-07-20 09:54:31] 2025-07-20 13:54:01,968 | INFO     | [job] retrieve thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:01,969 | INFO     | [job] job monitor thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,082 | INFO     | [payload] control thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,092 | INFO     | [payload] failed_post thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,242 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,371 | INFO     | [data] control thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,698 | INFO     | [job] validate thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,863 | INFO     | [job] control thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,969 | INFO     | [data] copytool_out thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:02,988 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:03,058 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:03,280 | INFO     | [data] copytool_in thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:03,313 | INFO     | [payload] validate_post thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:03,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 09:54:31] 2025-07-20 13:54:04,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 09:54:31] 2025-07-20 13:54:04,432 | INFO     | [job] queue monitor thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:08,029 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:11,765 | INFO     | job.realtimelogging is not enabled
[2025-07-20 09:54:31] 2025-07-20 13:54:12,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 09:54:31] 2025-07-20 13:54:13,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139678765619008)>', '<ExcThread(monitor, started 139678401406720)>']
[2025-07-20 09:54:31] 2025-07-20 13:54:18,115 | INFO     | all workflow threads have been joined
[2025-07-20 09:54:31] 2025-07-20 13:54:18,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 09:54:31] 2025-07-20 13:54:18,116 | INFO     | traces error code: 0
[2025-07-20 09:54:31] 2025-07-20 13:54:18,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 09:54:31] 2025-07-20 13:54:31,125 | INFO     | PID=579093 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-20 09:54:31] 2025-07-20 13:54:31,126 | INFO     | .. there are 49 such processes running
[2025-07-20 09:54:31] 2025-07-20 13:54:31,127 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 09:54:31] 2025-07-20 13:54:31,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 09:54:31] 2025-07-20 13:54:31,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 09:54:31] 2025-07-20 13:54:31,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 09:54:31] 2025-07-20 13:54:31,127 | INFO     | [monitor] control thread has ended
[2025-07-20 09:54:31] 2025-07-20 13:54:31,319 [wrapper] ==== pilot stdout END ====
[2025-07-20 09:54:31] 2025-07-20 13:54:31,324 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 09:54:31] 2025-07-20 13:54:31,329 [wrapper] pilotpid: 579093
[2025-07-20 09:54:31] 2025-07-20 13:54:31,334 [wrapper] Pilot exit status: 0
[2025-07-20 09:54:31] 2025-07-20 13:54:31,354 [wrapper] pandaids: 6739828208
[2025-07-20 09:54:31] 2025-07-20 13:54:31,541 [wrapper] cleanup supervisor_pilot 1513202 579094
[2025-07-20 09:54:31] 2025-07-20 13:54:31,546 [wrapper] Test setup, not cleaning
[2025-07-20 09:54:31] 2025-07-20 13:54:31,554 [wrapper] apfmon messages muted
[2025-07-20 09:54:31] 2025-07-20 13:54:31,569 [wrapper] ==== wrapper stdout END ====
[2025-07-20 09:54:31] 2025-07-20 13:54:31,574 [wrapper] ==== wrapper stderr END ====
[2025-07-20 09:54:31]  *** Error codes and diagnostics ***
[2025-07-20 09:54:31]     "exeErrorCode": 0,
[2025-07-20 09:54:31]     "exeErrorDiag": "",
[2025-07-20 09:54:31]     "pilotErrorCode": 0,
[2025-07-20 09:54:31]     "pilotErrorDiag": "",
[2025-07-20 09:54:31]  *** Listing of results directory ***
[2025-07-20 09:54:31] total 468484
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 20 01:31 pilot3.tar.gz
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 20 01:35 queuedata.json
[2025-07-20 09:54:31] -rwx------. 1 boincer umatlas     36292 Jul 20 01:35 runpilot2-wrapper.sh
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas       100 Jul 20 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 09:54:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 20 01:37 run_atlas
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas       105 Jul 20 01:37 job.xml
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas 277114698 Jul 20 01:37 EVNT.45668898._000008.pool.root.1
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 20 01:37 start_atlas.sh
[2025-07-20 09:54:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 20 01:37 shared
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas    542874 Jul 20 01:37 input.tar.gz
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas         0 Jul 20 01:37 boinc_lockfile
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas      2534 Jul 20 01:37 pandaJob.out
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas    978438 Jul 20 01:37 agis_schedconf.cvmfs.json
[2025-07-20 09:54:31] drwx------. 4 boincer umatlas      4096 Jul 20 01:37 pilot3
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas      6934 Jul 20 09:45 init_data.xml
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas 193696753 Jul 20 09:53 HITS.45668900._000178.pool.root.1
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas       531 Jul 20 09:53 boinc_task_state.xml
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas      1043 Jul 20 09:53 memory_monitor_summary.json
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas   1593055 Jul 20 09:53 agis_ddmendpoints.agis.ALL.json
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas    491493 Jul 20 09:53 log.45668900._000178.job.log.tgz.1
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas      7786 Jul 20 09:53 heartbeat.json
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 20 09:54 boinc_mmap_file
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas        28 Jul 20 09:54 wrapper_checkpoint.txt
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas        95 Jul 20 09:54 pilot_heartbeat.json
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas       822 Jul 20 09:54 pilotlog.txt
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas   2032213 Jul 20 09:54 log.45668900._000178.job.log.1
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas       357 Jul 20 09:54 output.list
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas       620 Jul 20 09:54 runtime_log
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas   2539520 Jul 20 09:54 result.tar.gz
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas       660 Jul 20 09:54 TMCNDm6sbx7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUZFLDmXRXtsm.diag
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas      8656 Jul 20 09:54 runtime_log.err
[2025-07-20 09:54:31] -rw-r--r--. 1 boincer umatlas     21259 Jul 20 09:54 stderr.txt
[2025-07-20 09:54:31] HITS file was successfully produced:
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas 193696753 Jul 20 09:53 shared/HITS.pool.root.1
[2025-07-20 09:54:31]  *** Contents of shared directory: ***
[2025-07-20 09:54:31] total 462816
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas 277114698 Jul 20 01:37 ATLAS.root_0
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 20 01:37 start_atlas.sh
[2025-07-20 09:54:31] -rw-r--r--. 2 boincer umatlas    542874 Jul 20 01:37 input.tar.gz
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas 193696753 Jul 20 09:53 HITS.pool.root.1
[2025-07-20 09:54:31] -rw-------. 1 boincer umatlas   2539520 Jul 20 09:54 result.tar.gz
09:54:33 (570296): run_atlas exited; CPU time 49075.753937
09:54:33 (570296): called boinc_finish(0)

</stderr_txt>
]]>

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