Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:28:28 (22841): wrapper (7.7.26015): starting
01:28:28 (22841): wrapper: running run_atlas (--nthreads 8)
[2025-07-20 01:28:28] Arguments: --nthreads 8
[2025-07-20 01:28:28] Threads: 8
[2025-07-20 01:28:28] Checking for CVMFS
[2025-07-20 01:28:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-20 01:28:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-20 01:28:28] Running cvmfs_config stat atlas.cern.ch
[2025-07-20 01:28:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-20 01:28:29] 2.11.2.0 2924 81476 109340 148531 1 1 12696355 20275201 1 130560 0 20161594 99.945 6493039 8771 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-20 01:28:29] CVMFS is ok
[2025-07-20 01:28:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-20 01:28:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-20 01:28:29] Further information can be found at the LHC@home message board.
[2025-07-20 01:28:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-20 01:28:29] Checking for apptainer binary...
[2025-07-20 01:28:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-20 01:28:29] Running /usr/bin/apptainer --version
[2025-07-20 01:28:29] apptainer version 1.3.2-1.el7
[2025-07-20 01:28:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-20 01:28:31] c-204-30.aglt2.org
[2025-07-20 01:28:31] apptainer works
[2025-07-20 01:28:31] Set ATHENA_PROC_NUMBER=8
[2025-07-20 01:28:31] Set ATHENA_CORE_NUMBER=8
[2025-07-20 01:28:31] Starting ATLAS job with PandaID=6739113223
[2025-07-20 01:28:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-20 04:22:31]  *** The last 200 lines of the pilot log: ***
[2025-07-20 04:22:31] 2025-07-20 08:21:52,110 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-20 04:22:31] 2025-07-20 08:21:53,590 | INFO     | monitor loop #765: job 0:6739113223 is in state 'finished'
[2025-07-20 04:22:31] 2025-07-20 08:21:53,591 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 04:22:31] 2025-07-20 08:21:56,093 | INFO     | monitor loop #766: job 0:6739113223 is in state 'finished'
[2025-07-20 04:22:31] 2025-07-20 08:21:56,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,094 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-20 04:22:31] 2025-07-20 08:21:58,097 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-07-20 04:22:31] 2025-07-20 08:21:58,099 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6739113223/memory_monitor_summary.json (trf name=prmon)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,100 | INFO     | extracted standard info from prmon json
[2025-07-20 04:22:31] 2025-07-20 08:21:58,100 | INFO     | extracted standard memory fields from prmon json
[2025-07-20 04:22:31] 2025-07-20 08:21:58,101 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-20 04:22:31] 2025-07-20 08:21:58,101 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-20 04:22:31] 2025-07-20 08:21:58,101 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-20 04:22:31] 2025-07-20 08:21:58,106 | INFO     | fitting pss+swap vs Time
[2025-07-20 04:22:31] 2025-07-20 08:21:58,106 | INFO     | sum of square deviations: 1523386702.5
[2025-07-20 04:22:31] 2025-07-20 08:21:58,107 | INFO     | sum of deviations: -3677639736.0000105
[2025-07-20 04:22:31] 2025-07-20 08:21:58,107 | INFO     | mean x: 1752994516.5
[2025-07-20 04:22:31] 2025-07-20 08:21:58,107 | INFO     | mean y: 2543652.0470588235
[2025-07-20 04:22:31] 2025-07-20 08:21:58,108 | INFO     | -- intersect: 4234484419.477072
[2025-07-20 04:22:31] 2025-07-20 08:21:58,108 | INFO     | intersect: 4234484419.477072
[2025-07-20 04:22:31] 2025-07-20 08:21:58,108 | INFO     | chi2: 1.6845465397873707
[2025-07-20 04:22:31] 2025-07-20 08:21:58,108 | INFO     | sum of square deviations: 1392881930.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,109 | INFO     | sum of deviations: -3301784454.0000005
[2025-07-20 04:22:31] 2025-07-20 08:21:58,109 | INFO     | mean x: 1752994364.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,110 | INFO     | mean y: 2544091.4060606062
[2025-07-20 04:22:31] 2025-07-20 08:21:58,110 | INFO     | -- intersect: 4157964169.979998
[2025-07-20 04:22:31] 2025-07-20 08:21:58,110 | INFO     | intersect: 4157964169.979998
[2025-07-20 04:22:31] 2025-07-20 08:21:58,110 | INFO     | chi2: 1.6847222158930701
[2025-07-20 04:22:31] 2025-07-20 08:21:58,110 | INFO     | current chi2=1.6847222158930701 (change=-0.010428688169199358 %)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,111 | INFO     | right removable region: 164
[2025-07-20 04:22:31] 2025-07-20 08:21:58,111 | INFO     | sum of square deviations: 1392881930.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,112 | INFO     | sum of deviations: -30384308802.999996
[2025-07-20 04:22:31] 2025-07-20 08:21:58,112 | INFO     | mean x: 1752994669.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,112 | INFO     | mean y: 2574445.345454545
[2025-07-20 04:22:31] 2025-07-20 08:21:58,112 | INFO     | -- intersect: 38242377981.965935
[2025-07-20 04:22:31] 2025-07-20 08:21:58,112 | INFO     | intersect: 38242377981.965935
[2025-07-20 04:22:31] 2025-07-20 08:21:58,113 | INFO     | chi2: 0.1555081911369189
[2025-07-20 04:22:31] 2025-07-20 08:21:58,113 | INFO     | current chi2=0.1555081911369189 (change=90.76854290077686 %)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,113 | INFO     | sum of square deviations: 1270051720.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,114 | INFO     | sum of deviations: -27998645163.000004
[2025-07-20 04:22:31] 2025-07-20 08:21:58,114 | INFO     | mean x: 1752994821.5
[2025-07-20 04:22:31] 2025-07-20 08:21:58,114 | INFO     | mean y: 2571428.4
[2025-07-20 04:22:31] 2025-07-20 08:21:58,114 | INFO     | -- intersect: 38647832252.70331
[2025-07-20 04:22:31] 2025-07-20 08:21:58,114 | INFO     | intersect: 38647832252.70331
[2025-07-20 04:22:31] 2025-07-20 08:21:58,115 | INFO     | chi2: 0.14383227111189054
[2025-07-20 04:22:31] 2025-07-20 08:21:58,115 | INFO     | current chi2=0.14383227111189054 (change=7.508234736489334 %)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,115 | INFO     | left removable region: 20
[2025-07-20 04:22:31] 2025-07-20 08:21:58,115 | INFO     | sum of square deviations: 925859220.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,116 | INFO     | sum of deviations: -17338645673.0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,116 | INFO     | mean x: 1752994943.5
[2025-07-20 04:22:31] 2025-07-20 08:21:58,116 | INFO     | mean y: 2559122.027777778
[2025-07-20 04:22:31] 2025-07-20 08:21:58,116 | INFO     | -- intersect: 32831047012.343494
[2025-07-20 04:22:31] 2025-07-20 08:21:58,116 | INFO     | intersect: 32831047012.343494
[2025-07-20 04:22:31] 2025-07-20 08:21:58,117 | INFO     | chi2: 0.12301229051418339
[2025-07-20 04:22:31] 2025-07-20 08:21:58,117 | INFO     | -- intersect: 32831047012.343494
[2025-07-20 04:22:31] 2025-07-20 08:21:58,117 | INFO     | current memory leak: -18.73 B/s (using 144 data points, chi2=0.12)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,117 | INFO     | could have reported an average CPU frequency of 2023 MHz (9 samples)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | ..............................
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . Timing measurements:
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . get job = 0 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . initial setup = 3 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . payload setup = 11 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . stage-in = 0 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . payload execution = 10348 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . stage-out = 0 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,118 | INFO     | . log creation = 0 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,119 | INFO     | ..............................
[2025-07-20 04:22:31] 2025-07-20 08:21:58,213 | INFO     | 
[2025-07-20 04:22:31] 2025-07-20 08:21:58,214 | INFO     | job summary report
[2025-07-20 04:22:31] 2025-07-20 08:21:58,214 | INFO     | --------------------------------------------------
[2025-07-20 04:22:31] 2025-07-20 08:21:58,214 | INFO     | PanDA job id: 6739113223
[2025-07-20 04:22:31] 2025-07-20 08:21:58,214 | INFO     | task id: 45668738
[2025-07-20 04:22:31] 2025-07-20 08:21:58,215 | INFO     | errors: (none)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,215 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-20 04:22:31] 2025-07-20 08:21:58,215 | INFO     | pilot state: finished 
[2025-07-20 04:22:31] 2025-07-20 08:21:58,215 | INFO     | transexitcode: 0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,215 | INFO     | exeerrorcode: 0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | exeerrordiag: 
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | exitcode: 0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | exitmsg: OK
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | cpuconsumptiontime: 78851 s
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | nevents: 400
[2025-07-20 04:22:31] 2025-07-20 08:21:58,216 | INFO     | neventsw: 0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | pid: 692
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | pgrp: 692
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | corecount: 8
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | event service: False
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | sizes: {0: 2396574, 1: 2397430, 7: 2397692, 12: 2397720, 10363: 2426383, 10364: 2435565, 10372: 2435767}
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | --------------------------------------------------
[2025-07-20 04:22:31] 2025-07-20 08:21:58,217 | INFO     | 
[2025-07-20 04:22:31] 2025-07-20 08:21:58,218 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-20 04:22:31] 2025-07-20 08:21:58,245 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,246 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,246 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,246 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,246 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,246 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,247 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,247 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,249 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,249 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-20 04:22:31] 2025-07-20 08:21:58,249 | INFO     | job 6739113223 has completed (purged errors)
[2025-07-20 04:22:31] 2025-07-20 08:21:58,250 | INFO     | overall cleanup function is called
[2025-07-20 04:22:31] 2025-07-20 08:21:59,258 | INFO     | --- collectZombieJob: --- 10, [692]
[2025-07-20 04:22:31] 2025-07-20 08:21:59,258 | INFO     | zombie collector waiting for pid 692
[2025-07-20 04:22:31] 2025-07-20 08:21:59,264 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-20 04:22:31] 2025-07-20 08:21:59,264 | INFO     | collected zombie processes
[2025-07-20 04:22:31] 2025-07-20 08:21:59,264 | INFO     | will attempt to kill all subprocesses of pid=692
[2025-07-20 04:22:31] 2025-07-20 08:21:59,354 | INFO     | process IDs to be killed: [692] (in reverse order)
[2025-07-20 04:22:31] 2025-07-20 08:21:59,411 | WARNING  | found no corresponding commands to process id(s)
[2025-07-20 04:22:31] 2025-07-20 08:21:59,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-20 04:22:31] 2025-07-20 08:21:59,414 | INFO     | did not find any defunct processes belonging to 692
[2025-07-20 04:22:31] 2025-07-20 08:21:59,417 | INFO     | did not find any defunct processes belonging to 692
[2025-07-20 04:22:31] 2025-07-20 08:21:59,417 | INFO     | ready for new job
[2025-07-20 04:22:31] 2025-07-20 08:21:59,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-20 04:22:31] 2025-07-20 08:21:59,419 | INFO     | ***************************************
[2025-07-20 04:22:31] 2025-07-20 08:21:59,419 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-20 04:22:31] 2025-07-20 08:21:59,419 | INFO     | ***************************************
[2025-07-20 04:22:31] 2025-07-20 08:21:59,419 | INFO     | 
[2025-07-20 04:22:31] 2025-07-20 08:21:59,420 | INFO     | architecture information:
[2025-07-20 04:22:31] 2025-07-20 08:21:59,420 | INFO     | executing command: cat /etc/os-release
[2025-07-20 04:22:31] 2025-07-20 08:21:59,437 | INFO     | cat /etc/os-release:
[2025-07-20 04:22:31] NAME="CentOS Linux"
[2025-07-20 04:22:31] VERSION="7 (Core)"
[2025-07-20 04:22:31] ID="centos"
[2025-07-20 04:22:31] ID_LIKE="rhel fedora"
[2025-07-20 04:22:31] VERSION_ID="7"
[2025-07-20 04:22:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-20 04:22:31] ANSI_COLOR="0;31"
[2025-07-20 04:22:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-20 04:22:31] HOME_URL="https://www.centos.org/"
[2025-07-20 04:22:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-20 04:22:31] 
[2025-07-20 04:22:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-20 04:22:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-20 04:22:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-20 04:22:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-20 04:22:31] 
[2025-07-20 04:22:31] 2025-07-20 08:21:59,437 | INFO     | ***************************************
[2025-07-20 04:22:31] 2025-07-20 08:21:59,940 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-20 04:22:31] 2025-07-20 08:21:59,960 | INFO     | sufficient remaining disk space (18375245824 B)
[2025-07-20 04:22:31] 2025-07-20 08:21:59,961 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-20 04:22:31] 2025-07-20 08:21:59,961 | INFO     | current server update state: UPDATING_FINAL
[2025-07-20 04:22:31] 2025-07-20 08:21:59,961 | INFO     | update_server=False
[2025-07-20 04:22:31] 2025-07-20 08:21:59,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-20 04:22:31] 2025-07-20 08:21:59,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-20 04:22:31] 2025-07-20 08:21:59,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-20 04:22:31] 2025-07-20 08:21:59,962 | INFO     | aborting loop
[2025-07-20 04:22:31] 2025-07-20 08:22:00,028 | INFO     | all data control threads have been joined
[2025-07-20 04:22:31] 2025-07-20 08:22:00,631 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-20 04:22:31] 2025-07-20 08:22:00,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-20 04:22:31] 2025-07-20 08:22:00,824 | INFO     | all payload control threads have been joined
[2025-07-20 04:22:31] 2025-07-20 08:22:00,967 | INFO     | [job] retrieve thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:00,968 | INFO     | [job] queue monitor thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:00,968 | INFO     | [job] job monitor thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,034 | INFO     | [data] control thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,138 | INFO     | [payload] validate_pre thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,293 | INFO     | [payload] validate_post thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,453 | INFO     | all job control threads have been joined
[2025-07-20 04:22:31] 2025-07-20 08:22:01,617 | INFO     | [data] copytool_in thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,636 | INFO     | [job] create_data_payload thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,646 | INFO     | [job] validate thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,688 | INFO     | [payload] execute_payloads thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:01,827 | INFO     | [payload] control thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:02,009 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:02,204 | INFO     | [payload] failed_post thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:02,459 | INFO     | [job] control thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:02,636 | INFO     | [data] copytool_out thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:04,721 | INFO     | [data] queue_monitor thread has finished
[2025-07-20 04:22:31] 2025-07-20 08:22:06,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082867599168)>', '<ExcThread(monitor, started 140082270942976)>']
[2025-07-20 04:22:31] 2025-07-20 08:22:11,774 | INFO     | all workflow threads have been joined
[2025-07-20 04:22:31] 2025-07-20 08:22:11,775 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-20 04:22:31] 2025-07-20 08:22:11,775 | INFO     | traces error code: 0
[2025-07-20 04:22:31] 2025-07-20 08:22:11,776 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-20 04:22:31] 2025-07-20 08:22:30,651 | INFO     | PID=26539 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-20 04:22:31] 2025-07-20 08:22:30,652 | INFO     | found 0 job(s) in 20 queues
[2025-07-20 04:22:31] 2025-07-20 08:22:30,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-20 04:22:31] 2025-07-20 08:22:30,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-20 04:22:31] 2025-07-20 08:22:30,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-20 04:22:31] 2025-07-20 08:22:30,652 | INFO     | [monitor] control thread has ended
[2025-07-20 04:22:31] 2025-07-20 08:22:30,767 [wrapper] ==== pilot stdout END ====
[2025-07-20 04:22:31] 2025-07-20 08:22:30,772 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-20 04:22:31] 2025-07-20 08:22:30,777 [wrapper] pilotpid: 26539
[2025-07-20 04:22:31] 2025-07-20 08:22:30,782 [wrapper] Pilot exit status: 0
[2025-07-20 04:22:31] 2025-07-20 08:22:30,800 [wrapper] pandaids: 6739113223
[2025-07-20 04:22:31] 2025-07-20 08:22:30,845 [wrapper] cleanup supervisor_pilot 21128 26540
[2025-07-20 04:22:31] 2025-07-20 08:22:30,849 [wrapper] Test setup, not cleaning
[2025-07-20 04:22:31] 2025-07-20 08:22:30,854 [wrapper] apfmon messages muted
[2025-07-20 04:22:31] 2025-07-20 08:22:30,858 [wrapper] ==== wrapper stdout END ====
[2025-07-20 04:22:31] 2025-07-20 08:22:30,862 [wrapper] ==== wrapper stderr END ====
[2025-07-20 04:22:31]  *** Error codes and diagnostics ***
[2025-07-20 04:22:31]     "exeErrorCode": 0,
[2025-07-20 04:22:31]     "exeErrorDiag": "",
[2025-07-20 04:22:31]     "pilotErrorCode": 0,
[2025-07-20 04:22:31]     "pilotErrorDiag": "",
[2025-07-20 04:22:31]  *** Listing of results directory ***
[2025-07-20 04:22:31] total 518672
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas    530466 Jul 19 17:46 pilot3.tar.gz
[2025-07-20 04:22:31] -rwx------ 1 boincer umatlas     36292 Jul 19 17:49 runpilot2-wrapper.sh
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas      5112 Jul 19 17:49 queuedata.json
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas       100 Jul 20 01:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-20 04:22:31] -rwxr-xr-x 1 boincer umatlas      7986 Jul 20 01:28 run_atlas
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas       105 Jul 20 01:28 job.xml
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas 307343746 Jul 20 01:28 EVNT.45668735._000005.pool.root.1
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas     15095 Jul 20 01:28 start_atlas.sh
[2025-07-20 04:22:31] drwxrwx--x 2 boincer umatlas      4096 Jul 20 01:28 shared
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas    542862 Jul 20 01:28 input.tar.gz
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas         0 Jul 20 01:28 boinc_lockfile
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas      2510 Jul 20 01:28 pandaJob.out
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas    978438 Jul 20 01:28 agis_schedconf.cvmfs.json
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas   1593055 Jul 20 01:28 agis_ddmendpoints.agis.ALL.json
[2025-07-20 04:22:31] drwx------ 4 boincer umatlas      4096 Jul 20 01:28 pilot3
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas 217338190 Jul 20 04:21 HITS.45668738._000182.pool.root.1
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas       530 Jul 20 04:21 boinc_task_state.xml
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas      1063 Jul 20 04:21 memory_monitor_summary.json
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas    352404 Jul 20 04:21 log.45668738._000182.job.log.tgz.1
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas      7842 Jul 20 04:21 heartbeat.json
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas      5904 Jul 20 04:22 init_data.xml
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas        28 Jul 20 04:22 wrapper_checkpoint.txt
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas      8192 Jul 20 04:22 boinc_mmap_file
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas        95 Jul 20 04:22 pilot_heartbeat.json
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas       745 Jul 20 04:22 pilotlog.txt
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas    928401 Jul 20 04:22 log.45668738._000182.job.log.1
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas       357 Jul 20 04:22 output.list
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas       620 Jul 20 04:22 runtime_log
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas   1300480 Jul 20 04:22 result.tar.gz
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas       663 Jul 20 04:22 TpPKDmTcUx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUZsKDm7vOcAo.diag
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas      8661 Jul 20 04:22 runtime_log.err
[2025-07-20 04:22:31] -rw-r--r-- 1 boincer umatlas     21229 Jul 20 04:22 stderr.txt
[2025-07-20 04:22:31] HITS file was successfully produced:
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas 217338190 Jul 20 04:21 shared/HITS.pool.root.1
[2025-07-20 04:22:31]  *** Contents of shared directory: ***
[2025-07-20 04:22:31] total 514216
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas 307343746 Jul 20 01:28 ATLAS.root_0
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas     15095 Jul 20 01:28 start_atlas.sh
[2025-07-20 04:22:31] -rw-r--r-- 2 boincer umatlas    542862 Jul 20 01:28 input.tar.gz
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas 217338190 Jul 20 04:21 HITS.pool.root.1
[2025-07-20 04:22:31] -rw------- 1 boincer umatlas   1300480 Jul 20 04:22 result.tar.gz
04:22:32 (22841): run_atlas exited; CPU time 78767.969254
04:22:32 (22841): called boinc_finish(0)

</stderr_txt>
]]>

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