Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-19 19:36:28 (39180): Detected: vboxwrapper 26206
2025-07-19 19:36:28 (39180): Detected: BOINC client v8.0.2
2025-07-19 19:36:29 (39180): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-07-19 19:36:29 (39180): Successfully copied 'init_data.xml' to the shared directory.
2025-07-19 19:36:30 (39180): Create VM. (boinc_055ed608e3c7158f, slot#1)
2025-07-19 19:36:30 (39180): Setting Memory Size for VM. (4800MB)
2025-07-19 19:36:31 (39180): Setting CPU Count for VM. (8)
2025-07-19 19:36:31 (39180): Setting Chipset Options for VM.
2025-07-19 19:36:31 (39180): Setting Graphics Controller Options for VM.
2025-07-19 19:36:31 (39180): Setting Boot Options for VM.
2025-07-19 19:36:32 (39180): Setting Network Configuration for NAT.
2025-07-19 19:36:32 (39180): Enabling VM Network Access.
2025-07-19 19:36:32 (39180): Disabling USB Support for VM.
2025-07-19 19:36:32 (39180): Disabling COM Port Support for VM.
2025-07-19 19:36:33 (39180): Disabling LPT Port Support for VM.
2025-07-19 19:36:33 (39180): Disabling Audio Support for VM.
2025-07-19 19:36:33 (39180): Disabling Clipboard Support for VM.
2025-07-19 19:36:33 (39180): Disabling Drag and Drop Support for VM.
2025-07-19 19:36:34 (39180): Adding storage controller(s) to VM.
2025-07-19 19:36:34 (39180): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-19 19:36:37 (39180): Adding VirtualBox Guest Additions to VM.
2025-07-19 19:36:37 (39180): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-19 19:36:37 (39180): forwarding host port 56061 to guest port 80
2025-07-19 19:36:38 (39180): Enabling remote desktop for VM.
2025-07-19 19:36:38 (39180): Required extension pack not installed, remote desktop not enabled.
2025-07-19 19:36:38 (39180): Enabling shared directory for VM.
2025-07-19 19:36:38 (39180): Starting VM using VBoxManage interface. (boinc_055ed608e3c7158f, slot#1)
2025-07-19 19:36:46 (39180): Successfully started VM. (PID = '24848')
2025-07-19 19:36:46 (39180): Reporting VM Process ID to BOINC.
2025-07-19 19:36:46 (39180): Guest Log: BIOS: VirtualBox 7.0.6
2025-07-19 19:36:46 (39180): Guest Log: CPUID EDX: 0x178bfbff
2025-07-19 19:36:46 (39180): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-19 19:36:46 (39180): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-19 19:36:46 (39180): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-19 19:36:46 (39180): Detected: Web Application Enabled (http://localhost:56061)
2025-07-19 19:36:46 (39180): Preference change detected
2025-07-19 19:36:46 (39180): Setting CPU throttle for VM. (60%)
2025-07-19 19:36:46 (39180): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-19 19:36:48 (39180): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-19 19:36:48 (39180): Guest Log: BIOS: Booting from Hard Disk...
2025-07-19 19:36:52 (39180): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-19 19:36:52 (39180): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-19 19:36:52 (39180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-19 19:37:06 (39180): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-19 19:37:06 (39180): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-19 19:37:19 (39180): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000212 main     Log opened 2025-07-19T19:37:17.840644000Z
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000358 main     OS Product: Linux
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000413 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000464 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000515 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000516 main     Process ID: 1369
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.000518 main     Package type: LINUX_64BITS_GENERIC
2025-07-19 19:37:19 (39180): Guest Log: 00:00:00.001973 main     5.2.32 r132073 started. Verbose level = 0
2025-07-19 19:37:19 (39180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-19 19:37:19 (39180): Guest Log: [INFO] Mounting shared directory
2025-07-19 19:37:19 (39180): Guest Log: [INFO] Checking for init_data.xml
2025-07-19 19:37:29 (39180): Guest Log: 00:00:10.006459 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 351 566 000ns (GuestNow=1 752 971 849 195 589 000 ns GuestLast=1 752 953 837 844 023 000 ns fSetTimeLastLoop=true )
2025-07-19 19:38:28 (39180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-19 19:38:28 (39180): Guest Log: [INFO] Detected branch: prod
2025-07-19 19:38:33 (39180): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-19 19:38:33 (39180): Guest Log: Copying input files
2025-07-19 19:38:38 (39180): Guest Log: Copied input files into RunAtlas.
2025-07-19 19:38:38 (39180): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-19 19:38:38 (39180): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-19 19:38:38 (39180): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-19 19:38:38 (39180): Guest Log: Further information can be found at the LHC@home message board.
2025-07-19 19:39:49 (39180): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-19 19:39:52 (39180): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-19 19:39:52 (39180): Guest Log: 2.6.3.0 1671 1 29488 148523 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-19 19:39:54 (39180): Guest Log: copied the webapp to /var/www
2025-07-19 19:39:54 (39180): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-19 19:39:54 (39180): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-19 19:39:58 (39180): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-19 19:39:59 (39180): Guest Log:  *** Starting ATLAS job. (PandaID=6739271758 taskID=45668889) ***
2025-07-19 21:16:57 (39180): Status Report: Elapsed Time: '6000.015381'
2025-07-19 21:16:57 (39180): Status Report: CPU Time: '14445.156250'
2025-07-19 22:57:07 (39180): Status Report: Elapsed Time: '12000.440857'
2025-07-19 22:57:07 (39180): Status Report: CPU Time: '43181.187500'
2025-07-20 00:37:13 (39180): Status Report: Elapsed Time: '18000.440857'
2025-07-20 00:37:13 (39180): Status Report: CPU Time: '71860.718750'
2025-07-20 02:17:19 (39180): Status Report: Elapsed Time: '24000.440857'
2025-07-20 02:17:19 (39180): Status Report: CPU Time: '100553.359375'
2025-07-20 03:57:25 (39180): Status Report: Elapsed Time: '30000.440857'
2025-07-20 03:57:25 (39180): Status Report: CPU Time: '128764.546875'
2025-07-20 05:37:32 (39180): Status Report: Elapsed Time: '36000.440857'
2025-07-20 05:37:32 (39180): Status Report: CPU Time: '129397.843750'
2025-07-20 07:17:36 (39180): Status Report: Elapsed Time: '42000.440857'
2025-07-20 07:17:36 (39180): Status Report: CPU Time: '129764.406250'
2025-07-20 08:00:30 (39180): Guest Log:  *** Job finished ***
2025-07-20 08:00:30 (39180): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:06,202 | INFO     | end of generic workflow (traces error code: 0)
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:06,203 | INFO     | traces error code: 0
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:06,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,363 | INFO     | PID=6106 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,364 | INFO     | found 0 job(s) in 20 queues
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,364 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,364 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,365 | INFO     | [monitor] control thread has ended
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,706 [wrapper] ==== pilot stdout END ====
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,712 [wrapper] ==== wrapper stdout RESUME ====
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,717 [wrapper] pilotpid: 6106
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 12:56:24,723 [wrapper] Pilot exit status: 0
2025-07-20 08:00:30 (39180): Guest Log: ./runpilot2-wrapper.sh: line 1018: /usr/bin/xargs: Input/output error
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,341 [wrapper] pandaids: 
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,692 [wrapper] cleanup supervisor_pilot  4464 6107
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,775 [wrapper] Test setup, not cleaning
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,808 [wrapper] apfmon messages muted
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,832 [wrapper] ==== wrapper stdout END ====
2025-07-20 08:00:30 (39180): Guest Log: 2025-07-20 13:00:28,838 [wrapper] ==== wrapper stderr END ====
2025-07-20 08:00:30 (39180): Guest Log:  *** Error codes and diagnostics ***
2025-07-20 08:00:30 (39180): Guest Log:     "exeErrorCode": 68,
2025-07-20 08:00:30 (39180): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2025-07-20 08:00:30 (39180): Guest Log:     "pilotErrorCode": 1305,
2025-07-20 08:00:30 (39180): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2025-07-20 08:00:30 (39180): Guest Log:  *** Listing of results directory ***
2025-07-20 08:00:30 (39180): Guest Log: total 8824
2025-07-20 08:00:30 (39180): Guest Log: -rw-r--r--. 1 atlas atlas  530466 Jul 19 23:57 pilot3.tar.gz
2025-07-20 08:00:30 (39180): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jul 20 00:00 queuedata.json
2025-07-20 08:00:30 (39180): Guest Log: -rwx------. 1 atlas atlas   36292 Jul 20 00:00 runpilot2-wrapper.sh
2025-07-20 08:00:30 (39180): Guest Log: -rwxr-xr-x. 1 atlas atlas    8195 Jul 20 00:38 init_data.xml
2025-07-20 08:00:30 (39180): Guest Log: -rwxr-xr-x. 1 atlas atlas  542874 Jul 20 00:38 input.tar.gz
2025-07-20 08:00:30 (39180): Guest Log: -rwxr-xr-x. 1 atlas atlas   15095 Jul 20 00:38 start_atlas.sh
2025-07-20 08:00:30 (39180): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jul 20 00:38 EVNT.45668886._000005.pool.root.1 -> /data/./ATLAS.root_0
2025-07-20 08:00:30 (39180): Guest Log: -rw-r--r--. 1 atlas atlas    2534 Jul 20 00:39 pandaJob.out
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas  978446 Jul 20 00:45 agis_schedconf.cvmfs.json
2025-07-20 08:00:30 (39180): Guest Log: drwx------. 4 atlas atlas    4096 Jul 20 00:46 pilot3
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas    1042 Jul 20 09:32 memory_monitor_summary.json
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas  475160 Jul 20 09:48 log.45668889._000117.job.log.tgz.1
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas       0 Jul 20 09:52 agis_ddmendpoints.agis.ALL.json
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas   10719 Jul 20 12:55 heartbeat.json
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas      95 Jul 20 12:56 pilot_heartbeat.json
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas     744 Jul 20 12:56 pilotlog.txt
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas 2930899 Jul 20 13:00 log.45668889._000117.job.log.1
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas     188 Jul 20 13:00 output.list
2025-07-20 08:00:30 (39180): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jul 20 13:00 runtime_log
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas 3430400 Jul 20 13:00 result.tar.gz
2025-07-20 08:00:30 (39180): Guest Log: -rw-r--r--. 1 atlas atlas    8454 Jul 20 13:00 runtime_log.err
2025-07-20 08:00:30 (39180): Guest Log: -rw-------. 1 atlas atlas     663 Jul 20 13:00 C8QODmkeWx7n9Rq4apOajLDm4fhM0noT9bVof3QYDmubsKDmtudZKm.diag
2025-07-20 08:00:30 (39180): Guest Log: Looking for outputfile HITS.45668889._000117.pool.root.1
2025-07-20 08:00:30 (39180): Guest Log: No HITS file was produced
2025-07-20 08:00:30 (39180): Guest Log: Successfully finished the ATLAS job!
2025-07-20 08:00:30 (39180): Guest Log: Copying the results back to the shared directory!
2025-07-20 08:00:31 (39180): Guest Log:  *** Contents of shared directory: ***
2025-07-20 08:00:31 (39180): Guest Log: total 298236
2025-07-20 08:00:31 (39180): Guest Log: -rwxrwxrwx. 1 root root 301387063 Jul 20 00:36 ATLAS.root_0
2025-07-20 08:00:31 (39180): Guest Log: -rwxrwxrwx. 1 root root      8195 Jul 20 00:36 init_data.xml
2025-07-20 08:00:31 (39180): Guest Log: -rwxrwxrwx. 1 root root    542874 Jul 20 00:35 input.tar.gz
2025-07-20 08:00:31 (39180): Guest Log: -rwxrwxrwx. 1 root root   3430400 Jul 20 13:00 result.tar.gz
2025-07-20 08:00:31 (39180): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 20 00:35 start_atlas.sh
2025-07-20 08:00:31 (39180): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-20 08:00:31 (39180): VM Completion File Detected.
2025-07-20 08:00:31 (39180): Powering off VM.
2025-07-20 08:00:32 (39180): Successfully stopped VM.
2025-07-20 08:00:32 (39180): Deregistering VM. (boinc_055ed608e3c7158f, slot#1)
2025-07-20 08:00:32 (39180): Removing network bandwidth throttle group from VM.
2025-07-20 08:00:33 (39180): Removing VM from VirtualBox.
08:00:38 (39180): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN